Human Gene MYL3 (uc003cql.1)
  Description: Homo sapiens myosin, light chain 3, alkali; ventricular, skeletal, slow (MYL3), mRNA.
RefSeq Summary (NM_000258): MYL3 encodes myosin light chain 3, an alkali light chain also referred to in the literature as both the ventricular isoform and the slow skeletal muscle isoform. Mutations in MYL3 have been identified as a cause of mid-left ventricular chamber type hypertrophic cardiomyopathy. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr3:46,899,357-46,904,973 Size: 5,617 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr3:46,899,734-46,904,880 Size: 5,147 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviews
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:46,899,357-46,904,973)mRNA (may differ from genome)Protein (195 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MYL3_HUMAN
DESCRIPTION: RecName: Full=Myosin light chain 3; AltName: Full=Cardiac myosin light chain 1; Short=CMLC1; AltName: Full=Myosin light chain 1, slow-twitch muscle B/ventricular isoform; Short=MLC1SB; AltName: Full=Ventricular/slow twitch myosin alkali light chain;
FUNCTION: Regulatory light chain of myosin. Does not bind calcium.
SUBUNIT: Myosin is a hexamer of 2 heavy chains and 4 light chains.
PTM: The N-terminus is blocked.
PTM: N-terminus is methylated by METTL11A/NTM1 (By similarity).
DISEASE: Defects in MYL3 are the cause of familial hypertrophic cardiomyopathy type 8 (CMH8) [MIM:608751]. Familial hypertrophic cardiomyopathy is a hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. CMH8 inheritance can be autosomal dominant or recessive.
SIMILARITY: Contains 3 EF-hand domains.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/MYL3";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MYL3
CDC HuGE Published Literature: MYL3

-  MalaCards Disease Associations
  MalaCards Gene Search: MYL3
Diseases sorted by gene-association score: cardiomyopathy, hypertrophic, 8* (1200), cardiomyopathy, familial hypertrophic* (165), myl3-related familial hypertrophic cardiomyopathy* (100), cardiomyopathy (12), postpoliomyelitis syndrome (11), restrictive cardiomyopathy (6), acute myocardial infarction (4), dilated cardiomyopathy (4), myocardial infarction (2), intrinsic cardiomyopathy (1), left ventricular noncompaction (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2596.32 RPKM in Heart - Left Ventricle
Total median expression: 3136.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.4093-0.284 Picture PostScript Text
3' UTR -92.60248-0.373 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018249 - EF_HAND_2

SCOP Domains:
47473 - EF-hand

ModBase Predicted Comparative 3D Structure on P08590
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003774 motor activity
GO:0003785 actin monomer binding
GO:0005509 calcium ion binding
GO:0008307 structural constituent of muscle
GO:0032038 myosin II heavy chain binding

Biological Process:
GO:0002026 regulation of the force of heart contraction
GO:0006942 regulation of striated muscle contraction
GO:0007519 skeletal muscle tissue development
GO:0030049 muscle filament sliding
GO:0032781 positive regulation of ATPase activity
GO:0055010 ventricular cardiac muscle tissue morphogenesis
GO:0060048 cardiac muscle contraction

Cellular Component:
GO:0005829 cytosol
GO:0005859 muscle myosin complex
GO:0016459 myosin complex
GO:0030017 sarcomere
GO:0031672 A band
GO:0031674 I band


-  Descriptions from all associated GenBank mRNAs
  E02082 - cDNA encoding human ventriculus myosin light chain I.
M24122 - Human myosin alkali light chain (ventricular) mRNA, complete cds.
BC009790 - Homo sapiens myosin, light chain 3, alkali; ventricular, skeletal, slow, mRNA (cDNA clone MGC:13575 IMAGE:4292684), complete cds.
JD296227 - Sequence 277251 from Patent EP1572962.
AF174483 - Homo sapiens cardiac myosin light chain-1 (CMLC1) mRNA, complete cds.
X07373 - Human mRNA for ventricular myosin light chain 1.
AK312044 - Homo sapiens cDNA, FLJ92321, Homo sapiens myosin, light polypeptide 3, alkali; ventricular,skeletal, slow (MYL3), mRNA.
HQ448706 - Synthetic construct Homo sapiens clone IMAGE:100072150; CCSB006426_04 myosin, light chain 3, alkali; ventricular, skeletal, slow (MYL3) gene, encodes complete protein.
KJ904513 - Synthetic construct Homo sapiens clone ccsbBroadEn_13907 MYL3-like gene, encodes complete protein.
CU679491 - Synthetic construct Homo sapiens gateway clone IMAGE:100017568 5' read MYL3 mRNA.
JD429139 - Sequence 410163 from Patent EP1572962.
JD224788 - Sequence 205812 from Patent EP1572962.
JD167115 - Sequence 148139 from Patent EP1572962.
JD424590 - Sequence 405614 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04260 - Cardiac muscle contraction
hsa05410 - Hypertrophic cardiomyopathy (HCM)
hsa05414 - Dilated cardiomyopathy

Reactome (by CSHL, EBI, and GO)

Protein P08590 (Reactome details) participates in the following event(s):

R-HSA-390595 Calcium Binds Troponin-C
R-HSA-390598 Myosin Binds ATP
R-HSA-390597 Release Of ADP From Myosin
R-HSA-390593 ATP Hydrolysis By Myosin
R-HSA-390522 Striated Muscle Contraction
R-HSA-397014 Muscle contraction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R534, MYL3_HUMAN, NM_000258, NP_000249, P08590, Q9NRS8
UCSC ID: uc003cql.1
RefSeq Accession: NM_000258
Protein: P08590 (aka MYL3_HUMAN)
CCDS: CCDS2746.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene MYL3:
hyper-card (Hypertrophic Cardiomyopathy Overview)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000258.2
exon count: 7CDS single in 3' UTR: no RNA size: 942
ORF size: 588CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1373.00frame shift in genome: no % Coverage: 98.62
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.