Human Gene CDC25B (ENST00000245960.10) from GENCODE V44
  Description: Homo sapiens cell division cycle 25B (CDC25B), transcript variant 1, mRNA. (from RefSeq NM_021873)
RefSeq Summary (NM_021873): CDC25B is a member of the CDC25 family of phosphatases. CDC25B activates the cyclin dependent kinase CDC2 by removing two phosphate groups and it is required for entry into mitosis. CDC25B shuttles between the nucleus and the cytoplasm due to nuclear localization and nuclear export signals. The protein is nuclear in the M and G1 phases of the cell cycle and moves to the cytoplasm during S and G2. CDC25B has oncogenic properties, although its role in tumor formation has not been determined. Multiple transcript variants for this gene exist. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000245960.10
Gencode Gene: ENSG00000101224.18
Transcript (Including UTRs)
   Position: hg38 chr20:3,796,310-3,806,115 Size: 9,806 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg38 chr20:3,796,532-3,804,961 Size: 8,430 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:3,796,310-3,806,115)mRNA (may differ from genome)Protein (580 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCMalacardsMGIneXtProtOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPIP2_HUMAN
DESCRIPTION: RecName: Full=M-phase inducer phosphatase 2; EC=3.1.3.48; AltName: Full=Dual specificity phosphatase Cdc25B;
FUNCTION: Tyrosine protein phosphatase which functions as a dosage-dependent inducer of mitotic progression. Required for G2/M phases of the cell cycle progression and abscission during cytokinesis in a ECT2-dependent manner. Directly dephosphorylates CDK1 and stimulates its kinase activity. The three isoforms seem to have a different level of activity.
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
ENZYME REGULATION: Stimulated by B-type cyclins.
SUBUNIT: Interacts with MAPK14 and 14-3-3 proteins.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, spindle pole.
PTM: Phosphorylated by BRSK1 in vitro. Phosphorylated by CHEK1, which inhibits the activity of this protein. Phosphorylation at Ser-353 by AURKA might locally participate in the control of the onset of mitosis. Phosphorylation by MELK at Ser-169 promotes localization to the centrosome and the spindle poles during mitosis. Phosphorylation at Ser-323 and Ser-375 by MAPK14 is required for binding to 14-3-3 proteins.
SIMILARITY: Belongs to the MPI phosphatase family.
SIMILARITY: Contains 1 rhodanese domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/cdc25b/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CDC25B
Diseases sorted by gene-association score: breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 60.87 RPKM in Brain - Cerebellum
Total median expression: 1081.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.00222-0.311 Picture PostScript Text
3' UTR -410.701154-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000751 - MPI_Phosphatase
IPR001763 - Rhodanese-like_dom

Pfam Domains:
PF06617 - M-phase inducer phosphatase
PF00581 - Rhodanese-like domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1CWR - X-ray MuPIT 1CWS - X-ray MuPIT 1CWT - X-ray MuPIT 1QB0 - X-ray MuPIT 1YM9 - X-ray MuPIT 1YMD - X-ray MuPIT 1YMK - X-ray MuPIT 1YML - X-ray MuPIT 1YS0 - X-ray MuPIT 2A2K - X-ray MuPIT 2IFD - X-ray MuPIT 2IFV - X-ray MuPIT 2UZQ - X-ray MuPIT 3FQT - X-ray MuPIT 3FQU - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P30305
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0019901 protein kinase binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000278 mitotic cell cycle
GO:0001556 oocyte maturation
GO:0006468 protein phosphorylation
GO:0006470 protein dephosphorylation
GO:0007049 cell cycle
GO:0007144 female meiosis I
GO:0008284 positive regulation of cell proliferation
GO:0032467 positive regulation of cytokinesis
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0045860 positive regulation of protein kinase activity
GO:0045931 positive regulation of mitotic cell cycle
GO:0051301 cell division
GO:1902751 positive regulation of cell cycle G2/M phase transition

Cellular Component:
GO:0000922 spindle pole
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  AK295573 - Homo sapiens cDNA FLJ53333 complete cds, highly similar to M-phase inducer phosphatase 2 (EC 3.1.3.48).
AK299192 - Homo sapiens cDNA FLJ56140 complete cds, highly similar to M-phase inducer phosphatase 2 (EC 3.1.3.48).
AK299028 - Homo sapiens cDNA FLJ55479 complete cds, highly similar to M-phase inducer phosphatase 2 (EC 3.1.3.48).
AK092713 - Homo sapiens cDNA FLJ35394 fis, clone SKNSH2002768, highly similar to M-PHASE INDUCER PHOSPHATASE 2 (EC 3.1.3.48).
FR695900 - Homo sapiens mRNA for isoform CDC25B6 (CDC25B gene).
FR695901 - Homo sapiens mRNA for isoform CDC25B7 (CDC25B gene).
BX647988 - Homo sapiens mRNA; cDNA DKFZp686N1752 (from clone DKFZp686N1752).
BC051711 - Homo sapiens cell division cycle 25 homolog B (S. pombe), mRNA (cDNA clone MGC:44614 IMAGE:5301205), complete cds.
S78187 - CDC25Hu2=cdc25+ homolog [human, mRNA, 3118 nt].
BC009953 - Homo sapiens cell division cycle 25 homolog B (S. pombe), mRNA (cDNA clone MGC:14269 IMAGE:4130804), complete cds.
Z68092 - H.sapiens mRNA for tyrosine phosphatase.
BC006395 - Homo sapiens cell division cycle 25 homolog B (S. pombe), mRNA (cDNA clone MGC:12797 IMAGE:4135465), complete cds.
M81934 - Human cdc25B mRNA, complete cds.
KJ890879 - Synthetic construct Homo sapiens clone ccsbBroadEn_00273 CDC25B gene, encodes complete protein.
BX640836 - Homo sapiens mRNA; cDNA DKFZp686G14213 (from clone DKFZp686G14213).
JD065989 - Sequence 47013 from Patent EP1572962.
JD389850 - Sequence 370874 from Patent EP1572962.
JD194242 - Sequence 175266 from Patent EP1572962.
DL492376 - Novel nucleic acids.
JD456935 - Sequence 437959 from Patent EP1572962.
JD456936 - Sequence 437960 from Patent EP1572962.
DL490864 - Novel nucleic acids.
JD405826 - Sequence 386850 from Patent EP1572962.
JD405870 - Sequence 386894 from Patent EP1572962.
JD125348 - Sequence 106372 from Patent EP1572962.
JD391573 - Sequence 372597 from Patent EP1572962.
JD132313 - Sequence 113337 from Patent EP1572962.
AK124284 - Homo sapiens cDNA FLJ42290 fis, clone TLIVE2007132.
JD133729 - Sequence 114753 from Patent EP1572962.
JD395818 - Sequence 376842 from Patent EP1572962.
JD182891 - Sequence 163915 from Patent EP1572962.
JD223839 - Sequence 204863 from Patent EP1572962.
JD232565 - Sequence 213589 from Patent EP1572962.
JD399819 - Sequence 380843 from Patent EP1572962.
JD561720 - Sequence 542744 from Patent EP1572962.
JD234260 - Sequence 215284 from Patent EP1572962.
JD149248 - Sequence 130272 from Patent EP1572962.
JD510182 - Sequence 491206 from Patent EP1572962.
JD510419 - Sequence 491443 from Patent EP1572962.
JD465732 - Sequence 446756 from Patent EP1572962.
JD424793 - Sequence 405817 from Patent EP1572962.
JD387464 - Sequence 368488 from Patent EP1572962.
JD130488 - Sequence 111512 from Patent EP1572962.
JD449626 - Sequence 430650 from Patent EP1572962.
JD354421 - Sequence 335445 from Patent EP1572962.
JD357467 - Sequence 338491 from Patent EP1572962.
JD419842 - Sequence 400866 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_cdc25Pathway - cdc25 and chk1 Regulatory Pathway in response to DNA damage
h_rbPathway - RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage
h_g2Pathway - Cell Cycle: G2/M Checkpoint
h_ptc1Pathway - Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle
h_srcRPTPPathway - Activation of Src by Protein-tyrosine phosphatase alpha

Reactome (by CSHL, EBI, and GO)

Protein P30305 (Reactome details) participates in the following event(s):

R-HSA-170120 Translocation of Cdc25B to the cytoplasm
R-HSA-8863007 p25-bound CDK5 phosphorylates CDC25B
R-HSA-170159 Translocation of Cdc25 to the nucleus
R-HSA-170161 Dephosphorylation of cytoplasmic Cyclin B1/B2:phospho-Cdc2 (Thr 14, Tyr 15) complexes by CDC25B
R-HSA-170153 Dephosphorylation of nuclear Cyclin B1:phospho-Cdc2 (Thr 14, Tyr15) complexes by Cdc25 phosphatases
R-HSA-174110 Cdc25A mediated dephosphorylation of Cyclin A:phospho-Cdk2
R-HSA-69273 Cyclin A/B1/B2 associated events during G2/M transition
R-HSA-8862803 Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models
R-HSA-69275 G2/M Transition
R-HSA-8863678 Neurodegenerative Diseases
R-HSA-69656 Cyclin A:Cdk2-associated events at S phase entry
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-1643685 Disease
R-HSA-69242 S Phase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: CDC25HU2, D3DVY1, D3DVY2, D3DVY3, D3DVY4, ENST00000245960.1, ENST00000245960.2, ENST00000245960.3, ENST00000245960.4, ENST00000245960.5, ENST00000245960.6, ENST00000245960.7, ENST00000245960.8, ENST00000245960.9, MPIP2_HUMAN, NM_021873, O43551, P30305, Q13971, Q5JX77, Q6RSS1, Q9BRA6, uc002wjn.1, uc002wjn.2, uc002wjn.3, uc002wjn.4, uc002wjn.5, uc002wjn.6
UCSC ID: ENST00000245960.10
RefSeq Accession: NM_021873
Protein: P30305 (aka MPIP2_HUMAN or MPI2_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.