Human Gene CDR1 (ENST00000674533.1) from GENCODE V49

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Description: cerebellar degeneration related protein 1 (from HGNC CDR1)
Gencode Transcript: ENST00000674533.1
Gencode Gene: ENSG00000288642.1
Transcript (Including UTRs)
Position: hg38 chrX:140,783,578-140,784,366 Size: 789 Total Exon Count: 1 Strand: -

Page Index	Sequence and Links	Primers	MalaCards	CTD	Other Species
mRNA Descriptions	Other Names	Methods

Data last updated at UCSC: 2025-09-17 13:57:07

Sequence and Links to Tools and Databases

Genomic Sequence (chrX:140,783,578-140,784,366)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	Ensembl
ExonPrimer	Gencode	HGNC	Lynx	Malacards	myGene2
PubMed	Wikipedia

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

MalaCards Disease Associations


	MalaCards Gene Search: CDR1 Diseases sorted by gene-association score: cerebellar degeneration (63), paraneoplastic cerebellar degeneration (21), candidiasis (3), opportunistic mycosis (1), penicilliosis (1), amyotrophic lateral sclerosis 1 (1)

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D001564 Benzo(a)pyrene D015032 Zinc C037123 cadmium sulfate C016837 zinc chloride

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	M16965 - Human cerebellar degeneration-associated protein mRNA, complete cds. BC113472 - Homo sapiens cerebellar degeneration-related protein 1, 34kDa, mRNA (cDNA clone MGC:142032 IMAGE:8322524), complete cds. BC113474 - Homo sapiens cerebellar degeneration-related protein 1, 34kDa, mRNA (cDNA clone MGC:142034 IMAGE:8322526), complete cds. KJ905170 - Synthetic construct Homo sapiens clone ccsbBroadEn_14580 CDR1 gene, encodes complete protein. JD063792 - Sequence 44816 from Patent EP1572962. JD035161 - Sequence 16185 from Patent EP1572962. JD022750 - Sequence 3774 from Patent EP1572962. JD035161 - Sequence 16185 from Patent EP1572962. JD031571 - Sequence 12595 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: BC113472, uc288nnc.1 UCSC ID: ENST00000674533.1 RefSeq Accession: NM_000014.6 CCDS: CCDS14670.1

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.