Mouse Gene AK017708 (G211889) Description and Page Index
  Description: 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730484H24 product:actin-crosslinking protein 7, full insert sequence.
Transcript (Including UTRs)
   Position: mm8 chr4:122,851,936-122,872,234 Size: 20,299 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm8 chr4:122,853,192-122,870,292 Size: 17,101 Coding Exon Count: 9 

Page IndexSequence and LinksMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2006-02-27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:122,851,936-122,872,234)mRNA (may differ from genome)Protein (393 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblGeneCards
MGIPubMedStanford SOURCEUniProtKB

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
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GNF Expression Atlas Data from U74a Mouse Chip

        
     
    
    
    
   
    
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Affymetrix All Exon Microarrays

           
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -56.10175-0.321 Picture PostScript Text
3' UTR -321.661256-0.256 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018247 - EF_Hand_1_Ca_BS
IPR018249 - EF_HAND_2
IPR002048 - EF_hand_Ca-bd
IPR003108 - GAS2_dom

Pfam Domains:
PF02187 - Growth-Arrest-Specific Protein 2 Domain

ModBase Predicted Comparative 3D Structure on Q9CYG3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserNo orthologGenome BrowserNo ortholog
Gene Details   Gene Details 
Gene Sorter   Gene Sorter 
GenBank Ensembl WormBase 
Protein Sequence Protein Sequence Protein Sequence 
Alignment Alignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0008017 microtubule binding

Cellular Component:
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  BC052520 - Mus musculus microtubule-actin crosslinking factor 1, mRNA (cDNA clone IMAGE:1530992), with apparent retained intron.
AF150755 - Mus musculus microtubule-actin crosslinking factor (Macf) mRNA, complete cds.
DQ067088 - Mus musculus microtubule-actin crosslinking factor 1b mRNA, complete cds.
AK017708 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730484H24 product:actin-crosslinking protein 7, full insert sequence.
BC043319 - Mus musculus microtubule-actin crosslinking factor 1, mRNA (cDNA clone IMAGE:5356775), partial cds.
AK122291 - Mus musculus mRNA for mKIAA0465 protein.
BC098194 - Mus musculus microtubule-actin crosslinking factor 1, mRNA (cDNA clone IMAGE:6817067), partial cds.
AK164953 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030050K20 product:microtubule-actin crosslinking factor 1, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: Macf1
UCSC ID: AK017708
Representative RNA: AK017708
Protein: Q9CYG3

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.