Mouse Gene Saxo1 (ENSMUST00000030216.5) Description and Page Index
  Description: Mus musculus stabilizer of axonemal microtubules 1 (Saxo1), mRNA. (from RefSeq NM_001081096)
Gencode Transcript: ENSMUST00000030216.5
Gencode Gene: ENSMUSG00000028492.13
Transcript (Including UTRs)
   Position: mm10 chr4:86,444,641-86,558,303 Size: 113,663 Total Exon Count: 4 Strand: -
Coding Region
   Position: mm10 chr4:86,444,814-86,558,015 Size: 113,202 Coding Exon Count: 4 

Page IndexSequence and LinksRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:86,444,641-86,558,303)mRNA (may differ from genome)Protein (476 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
Stanford SOURCEUniProtKB

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.40288-0.390 Picture PostScript Text
3' UTR -8.50173-0.049 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024963 - STOP/FAM154

ModBase Predicted Comparative 3D Structure on B1AXP3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD  WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008017 microtubule binding

Biological Process:
GO:0009631 cold acclimation
GO:0045724 positive regulation of cilium assembly
GO:0050821 protein stabilization
GO:0070417 cellular response to cold

Cellular Component:
GO:0005814 centriole
GO:0005879 axonemal microtubule
GO:0031514 motile cilium
GO:0036064 ciliary basal body
GO:0036126 sperm flagellum


-  Descriptions from all associated GenBank mRNAs
  AK049262 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330017P09 product:hypothetical protein, full insert sequence.
AK015673 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930500O09 product:hypothetical protein, full insert sequence.
AK076898 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930543A14 product:RIKEN cDNA 4930500O09 gene, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B1AXP3, B1AXP3_MOUSE, Fam154a, mCG_1697, NM_001081096, RP23-102G9.3, RP23-102G9.3-001, uc008tlt.1, uc008tlt.2
UCSC ID: uc008tlt.2
RefSeq Accession: NM_001081096
Protein: B1AXP3 CCDS: CCDS38795.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.