Mouse Gene Rnf40 (ENSMUST00000033088.7) Description and Page Index
  Description: Rnf40 (from geneSymbol)
Gencode Transcript: ENSMUST00000033088.7
Gencode Gene: ENSMUSG00000030816.8
Transcript (Including UTRs)
   Position: mm10 chr7:127,588,919-127,603,585 Size: 14,667 Total Exon Count: 18 Strand: +
Coding Region
   Position: mm10 chr7:127,588,997-127,602,643 Size: 13,647 Coding Exon Count: 18 

Page IndexSequence and LinksCTDRNA StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:127,588,919-127,603,585)mRNA (may differ from genome)Protein (961 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsPubMedStanford SOURCE
UniProtKBWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.6078-0.303 Picture PostScript Text
3' UTR -335.80942-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK089805 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830023M01 product:95 KDA RETINOBLASTOMA PROTEIN BINDING PROTEIN homolog [Homo sapiens], full insert sequence.
AK154982 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630113L02 product:ring finger protein 40, full insert sequence.
AK171462 - Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730216P17 product:ring finger protein 40, full insert sequence.
AK129184 - Mus musculus mRNA for mKIAA0661 protein.
LF204896 - JP 2014500723-A/12399: Polycomb-Associated Non-Coding RNAs.
BC038348 - Mus musculus ring finger protein 40, mRNA (cDNA clone MGC:19037 IMAGE:4187484), complete cds.
LF196615 - JP 2014500723-A/4118: Polycomb-Associated Non-Coding RNAs.
AK178704 - Mus musculus cDNA, clone:Y0G0107K06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
LF295712 - JP 2014500723-A/103215: Polycomb-Associated Non-Coding RNAs.
AK179439 - Mus musculus cDNA, clone:Y0G0110G15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
AK042654 - Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730013O04 product:KIAA0661 PROTEIN (95 KDA RETINOBLASTOMA PROTEIN BINDING PROTEIN, KIAA0661 GENE PRODUCT) (SIMILAR TO 95 KDA RETINOBLASTOMA PROTEIN BINDING PROTEIN) homolog [Homo sapiens], full insert sequence.
AK184353 - Mus musculus cDNA, clone:Y0G0129K06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
AK187741 - Mus musculus cDNA, clone:Y0G0142O07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
AK179583 - Mus musculus cDNA, clone:Y0G0110P13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
AK207184 - Mus musculus cDNA, clone:Y2G0107D07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000033088, based on BLAT search.
MA440473 - JP 2018138019-A/12399: Polycomb-Associated Non-Coding RNAs.
MA432192 - JP 2018138019-A/4118: Polycomb-Associated Non-Coding RNAs.
MA531289 - JP 2018138019-A/103215: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0X1KG60, BC038348, uc291vwj.1
UCSC ID: uc291vwj.1
RefSeq Accession: NM_001360883
CCDS: CCDS21871.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.