Mouse Gene Prdm8 (ENSMUST00000112959.3) Description and Page Index
  Description: Mus musculus PR domain containing 8 (Prdm8), mRNA. (from RefSeq NM_029947)
Gencode Transcript: ENSMUST00000112959.3
Gencode Gene: ENSMUSG00000035456.9
Transcript (Including UTRs)
   Position: mm10 chr5:98,180,978-98,188,991 Size: 8,014 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr5:98,183,291-98,186,642 Size: 3,352 Coding Exon Count: 3 

Page IndexSequence and LinksCTDRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr5:98,180,978-98,188,991)mRNA (may differ from genome)Protein (688 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
Stanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.70137-0.253 Picture PostScript Text
3' UTR -606.202349-0.258 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001214 - SET_dom
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger

SCOP Domains:
82199 - SET domain
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on B2RU90
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
Protein SequenceProtein Sequence Protein Sequence  
AlignmentAlignment Alignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding

Cellular Component:
GO:0005634 nucleus

-  Descriptions from all associated GenBank mRNAs
  AK050852 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030026C19 product:unclassifiable, full insert sequence.
AK036202 - Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630045H02 product:PR-DOMAIN CONTAINING PROTEIN 8 homolog [Homo sapiens], full insert sequence.
AK044713 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930035F16 product:PR-DOMAIN CONTAINING PROTEIN 8 homolog [Homo sapiens], full insert sequence.
BC141020 - Mus musculus PR domain containing 8, mRNA (cDNA clone MGC:175981 IMAGE:9055632), complete cds.
LF195045 - JP 2014500723-A/2548: Polycomb-Associated Non-Coding RNAs.
MA430622 - JP 2018138019-A/2548: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RU90, B2RU90_MOUSE, NM_029947, uc008ygb.1, uc008ygb.2
UCSC ID: uc008ygb.2
RefSeq Accession: NM_029947
Protein: B2RU90 CCDS: CCDS39178.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.