Mouse Gene C2cd4b (ENSMUST00000171652.2) Description and Page Index
  Description: Mus musculus C2 calcium-dependent domain containing 4B (C2cd4b), mRNA. (from RefSeq NM_001081314)
Gencode Transcript: ENSMUST00000171652.2
Gencode Gene: ENSMUSG00000091956.2
Transcript (Including UTRs)
   Position: mm10 chr9:67,759,437-67,760,930 Size: 1,494 Total Exon Count: 2 Strand: +
Coding Region
   Position: mm10 chr9:67,759,724-67,760,746 Size: 1,023 Coding Exon Count: 1 

Page IndexSequence and LinksCTDRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:67,759,437-67,760,930)mRNA (may differ from genome)Protein (340 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
Stanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.20120-0.235 Picture PostScript Text
3' UTR -48.50184-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q80XU5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0005544 calcium-dependent phospholipid binding
GO:0019905 syntaxin binding
GO:0030276 clathrin binding

Biological Process:
GO:0008150 biological_process
GO:0006906 vesicle fusion
GO:0017158 regulation of calcium ion-dependent exocytosis
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter

Cellular Component:
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  BC039571 - Mus musculus family with sequence similarity 148, member B, mRNA (cDNA clone MGC:48200 IMAGE:1515262), complete cds.
AK014341 - Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched library, clone:3300001A09 product:unclassifiable, full insert sequence.
DQ704780 - Mus musculus piRNA piR-120102, complete sequence.
DQ554243 - Mus musculus piRNA piR-21355, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: Fam148b, NM_001081314, Q80XU5, Q80XU5_MOUSE, uc009qmq.1, uc009qmq.2, uc009qmq.3
UCSC ID: uc009qmq.3
RefSeq Accession: NM_001081314
Protein: Q80XU5 CCDS: CCDS40675.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.