Mouse Gene 1810055G02Rik (ENSMUST00000237955.1) Description and Page Index
  Description: Mus musculus RIKEN cDNA 1810055G02 gene (1810055G02Rik), transcript variant 2, mRNA. (from RefSeq NM_001358256)
Gencode Transcript: ENSMUST00000237955.1
Gencode Gene: ENSMUSG00000035372.2
Transcript (Including UTRs)
   Position: mm10 chr19:3,708,371-3,717,873 Size: 9,503 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr19:3,715,727-3,717,593 Size: 1,867 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:3,708,371-3,717,873)mRNA (may differ from genome)Protein (392 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CK024_MOUSE
DESCRIPTION: RecName: Full=Uncharacterized protein C11orf24 homolog; Flags: Precursor;
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (Potential).

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -286.80734-0.391 Picture PostScript Text
3' UTR -78.10280-0.279 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q9D8N1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF201524 - JP 2014500723-A/9027: Polycomb-Associated Non-Coding RNAs.
AK007868 - Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810055G02 product:hypothetical Threonine-rich region containing protein, full insert sequence.
AK154828 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630107O04 product:hypothetical Threonine-rich region profile containing protein, full insert sequence.
DQ717064 - Mus musculus piRNA piR-132386, complete sequence.
BC019471 - Mus musculus RIKEN cDNA 1810055G02 gene, mRNA (cDNA clone MGC:28461 IMAGE:4161022), complete cds.
LF201525 - JP 2014500723-A/9028: Polycomb-Associated Non-Coding RNAs.
LF256195 - JP 2014500723-A/63698: Polycomb-Associated Non-Coding RNAs.
LF256196 - JP 2014500723-A/63699: Polycomb-Associated Non-Coding RNAs.
DQ699200 - Mus musculus piRNA piR-114522, complete sequence.
AK215828 - Mus musculus cDNA, clone:Y2G0136E22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039048, based on BLAT search.
LF256197 - JP 2014500723-A/63700: Polycomb-Associated Non-Coding RNAs.
MA437101 - JP 2018138019-A/9027: Polycomb-Associated Non-Coding RNAs.
MA437102 - JP 2018138019-A/9028: Polycomb-Associated Non-Coding RNAs.
MA491772 - JP 2018138019-A/63698: Polycomb-Associated Non-Coding RNAs.
MA491773 - JP 2018138019-A/63699: Polycomb-Associated Non-Coding RNAs.
MA491774 - JP 2018138019-A/63700: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CK024_MOUSE, NM_001358256, Q8VCP2, Q9D8N1, uc294iek.1
UCSC ID: uc294iek.1
RefSeq Accession: NM_001358256
Protein: Q9D8N1 (aka CK024_MOUSE)
CCDS: CCDS50342.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.