Human Gene ZC3H4 (ENST00000253048.10) Description and Page Index
  Description: Homo sapiens zinc finger CCCH-type containing 4 (ZC3H4), mRNA. (from RefSeq NM_015168)
RefSeq Summary (NM_015168): This gene encodes a member of a family of CCCH (C-x8-C-x5-C-x3-H type) zinc finger domain-containing proteins. These zinc finger domains, which coordinate zinc finger binding and are characterized by three cysteine residues and one histidine residue, are nucleic acid-binding. Other family members are known to function in post-transcriptional regulation. [provided by RefSeq, Aug 2011]. ##Evidence-Data-START## Transcript exon combination :: AB028987.2 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000253048.10/ ENSP00000253048.4 RefSeq Select criteria :: based on conservation, longest protein ##RefSeq-Attributes-END##
Gencode Transcript: ENST00000253048.10
Gencode Gene: ENSG00000130749.10
Transcript (Including UTRs)
   Position: hg38 chr19:47,064,187-47,113,776 Size: 49,590 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg38 chr19:47,066,356-47,112,584 Size: 46,229 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:47,064,187-47,113,776)mRNA (may differ from genome)Protein (1303 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsHGNC
HPRDLynxMGImyGene2neXtProtPubMed
Stanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: ZC3H4_HUMAN
DESCRIPTION: RecName: Full=Zinc finger CCCH domain-containing protein 4;
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Contains 3 C3H1-type zinc fingers.
SEQUENCE CAUTION: Sequence=BAA83016.2; Type=Erroneous initiation;

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.83 RPKM in Testis
Total median expression: 346.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.4062-0.216 Picture PostScript Text
3' UTR -816.702169-0.377 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000571 - Znf_CCCH

Pfam Domains:
PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Protein Data Bank (PDB) 3-D Structure
MuPIT help

2CQE
- NMR


ModBase Predicted Comparative 3D Structure on Q9UPT8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003723 RNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006357 regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK074282 - Homo sapiens cDNA FLJ23702 fis, clone HEP10811.
AL050155 - Homo sapiens mRNA; cDNA DKFZp586L1220 (from clone DKFZp586L1220).
AB028987 - Homo sapiens KIAA1064 mRNA for KIAA1064 protein.
JD147352 - Sequence 128376 from Patent EP1572962.
JD529991 - Sequence 511015 from Patent EP1572962.
JD349653 - Sequence 330677 from Patent EP1572962.
JD168492 - Sequence 149516 from Patent EP1572962.
JD321665 - Sequence 302689 from Patent EP1572962.
JD157983 - Sequence 139007 from Patent EP1572962.
JD235136 - Sequence 216160 from Patent EP1572962.
JD501782 - Sequence 482806 from Patent EP1572962.
JD218234 - Sequence 199258 from Patent EP1572962.
JD506129 - Sequence 487153 from Patent EP1572962.
JD334758 - Sequence 315782 from Patent EP1572962.
JD464653 - Sequence 445677 from Patent EP1572962.
AK125279 - Homo sapiens cDNA FLJ43289 fis, clone MESAN2013019.
JD163733 - Sequence 144757 from Patent EP1572962.
JD253731 - Sequence 234755 from Patent EP1572962.
JD320333 - Sequence 301357 from Patent EP1572962.
JD380787 - Sequence 361811 from Patent EP1572962.
JD192170 - Sequence 173194 from Patent EP1572962.
JD423446 - Sequence 404470 from Patent EP1572962.
JD449950 - Sequence 430974 from Patent EP1572962.
JD050520 - Sequence 31544 from Patent EP1572962.
JD511232 - Sequence 492256 from Patent EP1572962.
JD249291 - Sequence 230315 from Patent EP1572962.
JD204063 - Sequence 185087 from Patent EP1572962.
DQ583794 - Homo sapiens piRNA piR-50906, complete sequence.
JD244876 - Sequence 225900 from Patent EP1572962.
JD285328 - Sequence 266352 from Patent EP1572962.
JD229761 - Sequence 210785 from Patent EP1572962.
JD479837 - Sequence 460861 from Patent EP1572962.
JD335822 - Sequence 316846 from Patent EP1572962.
JD104326 - Sequence 85350 from Patent EP1572962.
JD511132 - Sequence 492156 from Patent EP1572962.
JD197483 - Sequence 178507 from Patent EP1572962.
JD365839 - Sequence 346863 from Patent EP1572962.
JD451857 - Sequence 432881 from Patent EP1572962.
JD121950 - Sequence 102974 from Patent EP1572962.
JD340190 - Sequence 321214 from Patent EP1572962.
JD099607 - Sequence 80631 from Patent EP1572962.
JD156126 - Sequence 137150 from Patent EP1572962.
JD230453 - Sequence 211477 from Patent EP1572962.
JD097774 - Sequence 78798 from Patent EP1572962.
JD485676 - Sequence 466700 from Patent EP1572962.
JD248163 - Sequence 229187 from Patent EP1572962.
JD385221 - Sequence 366245 from Patent EP1572962.
JD191846 - Sequence 172870 from Patent EP1572962.
JD282843 - Sequence 263867 from Patent EP1572962.
JD487228 - Sequence 468252 from Patent EP1572962.
AB384098 - Synthetic construct DNA, clone: pF1KSDA1064, Homo sapiens C19orf7 gene for zinc finger CCCH domain-containing protein C19orf7, complete cds, without stop codon, in Flexi system.
X58238 - Human mRNA for anti-lectin antibody epitope (clone p36/8-4).

-  Other Names for This Gene
  Alternate Gene Symbols: C19orf7, KIAA1064, NM_015168, Q9UPT8, Q9Y420, uc002pga.1, uc002pga.2, uc002pga.3, uc002pga.4, uc002pga.5, uc002pga.6, ZC3H4_HUMAN
UCSC ID: uc002pga.6
RefSeq Accession: NM_015168
Protein: Q9UPT8 (aka ZC3H4_HUMAN)
CCDS: CCDS42582.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.