Human Gene EMX1 (ENST00000394111.6) Description and Page Index
  Description: empty spiracles homeobox 1 (from HGNC EMX1)
Gencode Transcript: ENST00000394111.6
Gencode Gene: ENSG00000135638.14
Transcript (Including UTRs)
   Position: hg38 chr2:72,916,260-72,934,328 Size: 18,069 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr2:72,916,684-72,933,854 Size: 17,171 Coding Exon Count: 3 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr2:72,916,260-72,934,328)mRNA (may differ from genome)Protein (209 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
MGIPubMedStanford SOURCEUniProtKBWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: EMX1
Diseases sorted by gene-association score: kallmann syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.59 RPKM in Kidney - Cortex
Total median expression: 38.64 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -198.80424-0.469 Picture PostScript Text
3' UTR -194.50474-0.410 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC037242 - Homo sapiens empty spiracles homeobox 1, mRNA (cDNA clone IMAGE:5198260), complete cds.
BC045762 - Homo sapiens empty spiracles homeobox 1, mRNA (cDNA clone MGC:48662 IMAGE:5260039), complete cds.
AB463604 - Synthetic construct DNA, clone: pF1KB8214, Homo sapiens EMX1 gene for empty spiracles homeobox 1, without stop codon, in Flexi system.
X68879 - H.sapiens EMX1 mRNA.
AK092368 - Homo sapiens cDNA FLJ35049 fis, clone OCBBF2018014.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A087WZF2, BC037242, uc061koe.1
UCSC ID: uc061koe.1
RefSeq Accession: NM_004097

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.