Human Gene AJM1 (ENST00000436881.2) Description and Page Index
  Description: Homo sapiens apical junction component 1 homolog (AJM1), mRNA. (from RefSeq NM_001080482)
Gencode Transcript: ENST00000436881.2
Gencode Gene: ENSG00000232434.2
Transcript (Including UTRs)
   Position: hg38 chr9:136,844,415-136,848,801 Size: 4,387 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg38 chr9:136,844,415-136,847,345 Size: 2,931 Coding Exon Count: 1 

Page IndexSequence and LinksRNA-Seq ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:136,844,415-136,848,801)mRNA (may differ from genome)Protein (976 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblEntrez Gene
ExonPrimerGeneCardsHPRDLynxMGIneXtProt
PubMedStanford SOURCEUniProtKB

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.36 RPKM in Brain - Cerebellum
Total median expression: 205.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -668.601456-0.459 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on C9J069
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsemblWormBase 
Protein SequenceProtein Sequence Protein SequenceProtein Sequence 
AlignmentAlignment AlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005886 plasma membrane
GO:0005912 adherens junction
GO:0005929 cilium
GO:0016020 membrane
GO:0016324 apical plasma membrane
GO:0030054 cell junction
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  LF211799 - JP 2014500723-A/19302: Polycomb-Associated Non-Coding RNAs.
MA447376 - JP 2018138019-A/19302: Polycomb-Associated Non-Coding RNAs.
LF212877 - JP 2014500723-A/20380: Polycomb-Associated Non-Coding RNAs.
MA448454 - JP 2018138019-A/20380: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: C9J069, C9orf172, CI172_HUMAN, NM_001080482, uc011meh.1, uc011meh.2, uc011meh.3
UCSC ID: uc011meh.3
Representative RNA: NM_001080482
Protein: C9J069 (aka CI172_HUMAN)
CCDS: CCDS48059.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.