Human Gene PRR23D1 (ENST00000533250.1)
  Description: Homo sapiens proline rich 23 domain containing 1 (PRR23D1), mRNA. (from RefSeq NM_001282479)
Gencode Transcript: ENST00000533250.1
Gencode Gene: ENSG00000255251.1
Transcript (Including UTRs)
   Position: hg38 chr8:7,539,628-7,542,450 Size: 2,823 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg38 chr8:7,539,805-7,541,880 Size: 2,076 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-01-14 15:32:12

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:7,539,628-7,542,450)mRNA (may differ from genome)Protein (279 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsLynxMGIneXtProt
PubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: E9PI22_HUMAN
DESCRIPTION: SubName: Full=Uncharacterized protein;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.00 RPKM in Adipose - Subcutaneous
Total median expression: 0.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.90177-0.197 Picture PostScript Text
3' UTR -138.94570-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018903 - UPF0572

Pfam Domains:
PF10630 - Protein of unknown function (DUF2476)

ModBase Predicted Comparative 3D Structure on E9PI22
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
 

-  Other Names for This Gene
  Alternate Gene Symbols: E9PI22, E9PI22_HUMAN, NM_001282479, uc033bay.1, uc033bay.2
UCSC ID: ENST00000533250.1
RefSeq Accession: NM_001282478
Protein: E9PI22 CCDS: CCDS64820.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.