Human Gene BCAS3 (ENST00000585744.5) Description and Page Index
  Description: BCAS3, microtubule associated cell migration factor (from HGNC BCAS3)
Gencode Transcript: ENST00000585744.5
Gencode Gene: ENSG00000141376.23
Transcript (Including UTRs)
   Position: hg38 chr17:60,887,050-61,392,125 Size: 505,076 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg38 chr17:60,889,721-61,392,125 Size: 502,405 Coding Exon Count: 16 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-01-14 15:32:12

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:60,887,050-61,392,125)mRNA (may differ from genome)Protein (699 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedUniProtKBWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: BCAS3
Diseases sorted by gene-association score: breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.98 RPKM in Testis
Total median expression: 172.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -36.10103-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  AK304791 - Homo sapiens cDNA FLJ58237 complete cds, highly similar to Breast carcinoma amplified sequence 3.
AK225757 - Homo sapiens mRNA for Splice isoform 3 of Q9H6U6 variant, clone: FCC135C12.
BC017390 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:4108577), partial cds.
AK314744 - Homo sapiens cDNA, FLJ95607, highly similar to Homo sapiens breast carcinoma amplified sequence 3 (BCAS3), mRNA.
AF361219 - Homo sapiens breast carcinoma amplified sequence 3 (BCAS3) mRNA, complete cds.
BC117275 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone MGC:150884 IMAGE:40125826), complete cds.
BC143386 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone MGC:176909 IMAGE:9051892), complete cds.
BC143387 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone MGC:176910 IMAGE:9051893), complete cds.
AK025510 - Homo sapiens cDNA: FLJ21857 fis, clone HEP02294.
AK022526 - Homo sapiens cDNA FLJ12464 fis, clone NT2RM1000780.
AJ518105 - Homo sapiens partial mRNA for Maab2 protein.
AJ518836 - Homo sapiens partial mRNA for Maab3 protein.
AK023054 - Homo sapiens cDNA FLJ12992 fis, clone NT2RP3000149.
BC001250 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:3458571), partial cds.
AL831895 - Homo sapiens mRNA; cDNA DKFZp547L188 (from clone DKFZp547L188).
AK000135 - Homo sapiens cDNA FLJ20128 fis, clone COL06181.
AF260268 - Homo sapiens GAOB1 mRNA, complete cds.
CU674626 - Synthetic construct Homo sapiens gateway clone IMAGE:100017160 5' read BCAS3 mRNA.
KJ902698 - Synthetic construct Homo sapiens clone ccsbBroadEn_12092 BCAS3 gene, encodes complete protein.
BC033220 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:5018525), with apparent retained intron.
BC036280 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:3917955).
BC013841 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:3923751).
BC029983 - Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA clone IMAGE:3917933).
JD399344 - Sequence 380368 from Patent EP1572962.
AF361221 - Homo sapiens breast carcinoma amplified sequence 4/3 fusion protein (BCAS4/BCAS3 fusion) mRNA, complete cds.
AJ511332 - Homo sapiens partial mRNA for Maab1 protein.
BX648103 - Homo sapiens mRNA; cDNA DKFZp686O1527 (from clone DKFZp686O1527).
JD163680 - Sequence 144704 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC117275, ENST00000585744.1, ENST00000585744.2, ENST00000585744.3, ENST00000585744.4, K7ESE9, uc060iin.1
UCSC ID: ENST00000585744.5
RefSeq Accession: NM_001099432

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.