Human Gene SPAG11A (ENST00000642566.1)
  Description: sperm associated antigen 11A (from HGNC SPAG11A)
Gencode Transcript: ENST00000642566.1
Gencode Gene: ENSG00000178287.18
Transcript (Including UTRs)
   Position: hg38 chr8:7,847,896-7,860,930 Size: 13,035 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr8:7,848,047-7,860,833 Size: 12,787 Coding Exon Count: 3 

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-01-14 15:32:12

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:7,847,896-7,860,930)mRNA (may differ from genome)Protein (133 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.00 RPKM in Adipose - Subcutaneous
Total median expression: 0.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.90151-0.324 Picture PostScript Text
3' UTR -24.1097-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AJ635328 - Homo sapiens partial mRNA for human epididymal protein 2 (HE2C gene), isoform C.
AF168617 - Homo sapiens HE2 beta1 mRNA, complete cds.
JD062832 - Sequence 43856 from Patent EP1572962.
JD492921 - Sequence 473945 from Patent EP1572962.
BC125141 - Homo sapiens sperm associated antigen 11B, mRNA (cDNA clone IMAGE:40119847).
JD140462 - Sequence 121486 from Patent EP1572962.
JD361007 - Sequence 342031 from Patent EP1572962.
BC058833 - Homo sapiens sperm associated antigen 11A, mRNA (cDNA clone MGC:61846 IMAGE:6615920), complete cds.
X67697 - H.sapiens HE2 mRNA.
AF168618 - Homo sapiens HE2 beta2 mRNA, complete cds.
AF168619 - Homo sapiens HE2 gamma1 mRNA, complete cds.
KJ904340 - Synthetic construct Homo sapiens clone ccsbBroadEn_13734 SPAG11A gene, encodes complete protein.
AJ628017 - Homo sapiens partial mRNA for human epididymal protein 2 (HE2 gene), isoform C.
AF168620 - Homo sapiens HE2 gamma2 mRNA, partial cds.
AF170797 - Homo sapiens HE2 alpha2 mRNA, partial cds.
JD349641 - Sequence 330665 from Patent EP1572962.
JD475165 - Sequence 456189 from Patent EP1572962.
JD349443 - Sequence 330467 from Patent EP1572962.
JD345840 - Sequence 326864 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A2R8Y853, AF168617, uc286ajt.1
UCSC ID: ENST00000642566.1
RefSeq Accession: NM_001363726

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.