Rat Gene Sqrdl (RGD:1564504) Description and Page Index
  Description: No description available
Transcript (Including UTRs)
   Position: rn4 chr3:473,742-109,752,321 Size: 109,278,580 Total Exon Count: 6 Strand: +
Coding Region
   Position: rn4 chr3:473,761-109,752,110 Size: 109,278,350 Coding Exon Count: 6 

Page IndexSequence and LinksRGD Gene DataCTDMicroarray ExpressionProtein Structure
Other SpeciesmRNA DescriptionsPathwaysOther NamesMethods
Data last updated: 2011-12-07

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:473,742-109,752,321)mRNAProtein (137 aa)
Gene SorterOther Species FASTAEnsemblEntrez GeneGeneNetworkPubMed
ReactomeRGDStanford SOURCEUniProtKB

-  Additional Data from RGD
  RGD Gene: 1564504
Gene Symbol: Sqrdl
Name: sulfide quinone reductase-like (yeast)
Curated Pubmed Papers: 12477932, 15632090
Entrez Gene: 691966
UniProt: Q7TP12
GenBank Nucleotide: AY325246, BC158559, CH473949, NM_001047913
Genebank Protein: AAI58560, AAP92647, EDL80049, EDL80050, NP_001041378, Q7TP12
UniGene: 105482, 1416
Ensembl Gene: ENSRNOG00000000172
IMAGE CLONE: 7456444
MGC: BC158559

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

Affymetrix All Exon Microarrays

           
Ratios

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015904 - Sulphide_quinone_reductase

ModBase Predicted Comparative 3D Structure on Q7TP12
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanMouseZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserNo ortholog
 Gene Details Gene DetailsGene Details 
 Gene Sorter Gene SorterGene Sorter 
  EnsemblFlyBaseWormBase 
  Protein SequenceProtein SequenceProtein Sequence 
  AlignmentAlignmentAlignment 

-  Descriptions from all associated GenBank mRNAs
  BC107459 - Rattus norvegicus cDNA clone IMAGE:7455024.
BC158559 - Rattus norvegicus sulfide quinone reductase-like (yeast), mRNA (cDNA clone MGC:187237 IMAGE:7456444), complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q7TP12 (Reactome details) participates in the following event(s):

R-RNO-1614605 Persulfide sulfur is dioxygenated
R-RNO-1614517 Sulfide oxidation to sulfate
R-RNO-1614558 Degradation of cysteine and homocysteine
R-RNO-1614635 Sulfur amino acid metabolism
R-RNO-71291 Metabolism of nitrogenous molecules
R-RNO-1430728 Metabolism

-  Other Names for This Gene
  Symbol: Cc2-17, LOC691966
Name: similar to Sulfide:quinone oxidoreductase, mitochondrial precursor, sulfide quinone reductase-like
RefSeq Accession: NM_001047913
Protein: Q7TP12

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.