Human Gene BDNFOS (uc001mrm.1) Description and Page Index
  Description: Homo sapiens non-coding transcript BT2C (BDNF) mRNA, complete sequence; alternatively spliced.
Transcript (Including UTRs)
   Position: hg18 chr11:27,484,975-27,655,926 Size: 170,952 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksMicroarray ExpressionOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2009-03-03

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:27,484,975-27,655,926)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
Entrez GeneExonPrimerGeneNetworkOMIMPubMedStanford SOURCE

-  Microarray Expression Data
 
Expression ratio colors:

Affymetrix All Exon Microarrays

           
Ratios

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  EF689023 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
AY054391 - Homo sapiens non-coding transcript BT2C (BDNF) mRNA, complete sequence; alternatively spliced.
AY054403 - Homo sapiens non-coding transcript BT2B (BDNF) mRNA, complete sequence; alternatively spliced.
AY054404 - Homo sapiens non-coding transcript BT2D (BDNF) mRNA, complete sequence; alternatively spliced.
AY054405 - Homo sapiens non-coding transcript BT2A (BDNF) mRNA, complete sequence; alternatively spliced.
AY054401 - Homo sapiens non-coding transcript BT1C (BDNF) mRNA, complete sequence; alternatively spliced.
AY054402 - Homo sapiens non-coding transcript BT1A (BDNF) mRNA, complete sequence; alternatively spliced.
AY513486 - Homo sapiens non-coding transcript BT1B (BDNF) mRNA, complete sequence; alternatively spliced.
EF689038 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689026 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689025 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689027 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689029 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689031 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689033 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689035 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689037 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689039 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689034 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689036 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689030 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689032 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689040 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689042 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689028 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689024 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689041 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689022 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
CU688745 - Synthetic construct Homo sapiens gateway clone IMAGE:100018605 3' read BDNF mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_002832
UCSC ID: uc001mrm.1
RefSeq Accession: NR_002832

-  Gene Model Information
 
category: antisense nonsense-mediated-decay: no RNA accession: NR_002832.1
exon count: 8CDS single in 3' UTR: no RNA size: 2364
ORF size: 0CDS single in intron: no Alignment % ID: 99.83
txCdsPredict score: -13.50frame shift in genome: no % Coverage: 98.14
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 664# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.