Human Gene KIAA0930 (uc003bfx.1) Description and Page Index
  Description: Homo sapiens KIAA0930 (KIAA0930), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr22:45,588,123-45,636,650 Size: 48,528 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr22:45,593,057-45,636,584 Size: 43,528 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:45,588,123-45,636,650)mRNA (may differ from genome)Protein (404 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtPubMedStanford SOURCETreefamUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: K0930_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein KIAA0930;

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.90 RPKM in Brain - Cortex
Total median expression: 663.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.3066-0.474 Picture PostScript Text
3' UTR -1871.754934-0.379 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019141 - DUF2045

Pfam Domains:
PF09741 - Uncharacterized conserved protein (DUF2045)

ModBase Predicted Comparative 3D Structure on Q6ICG6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene Details  Gene DetailsGene Details 
Gene Sorter  Gene SorterGene Sorter 
  EnsemblFlyBaseWormBase 
  Protein SequenceProtein SequenceProtein Sequence 
  AlignmentAlignmentAlignment 

-  Descriptions from all associated GenBank mRNAs
  BC053595 - Homo sapiens chromosome 22 open reading frame 9, mRNA (cDNA clone MGC:61801 IMAGE:5730020), complete cds.
AK094937 - Homo sapiens cDNA FLJ37618 fis, clone BRCOC2012813.
CR456402 - Homo sapiens bK268H5.1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.bK268H5.1).
CU012960 - Homo sapiens C22orf9, mRNA (cDNA clone IMAGE:100000123), complete cds, with stop codon, in Gateway system.
CU013248 - Homo sapiens C22orf9, mRNA (cDNA clone IMAGE:100000027), complete cds, without stop codon, in Gateway system.
KC154032 - Homo sapiens chromosome 22 open reading frame 9-like (LSC3) mRNA, partial sequence.
AB023147 - Homo sapiens mRNA for KIAA0930 protein, partial cds.
JD482763 - Sequence 463787 from Patent EP1572962.
JD145929 - Sequence 126953 from Patent EP1572962.
JD258755 - Sequence 239779 from Patent EP1572962.
JD130896 - Sequence 111920 from Patent EP1572962.
JD170008 - Sequence 151032 from Patent EP1572962.
JD319340 - Sequence 300364 from Patent EP1572962.
JD231532 - Sequence 212556 from Patent EP1572962.
JD545024 - Sequence 526048 from Patent EP1572962.
JD420943 - Sequence 401967 from Patent EP1572962.
JD372656 - Sequence 353680 from Patent EP1572962.
JD319001 - Sequence 300025 from Patent EP1572962.
JD339719 - Sequence 320743 from Patent EP1572962.
JD479551 - Sequence 460575 from Patent EP1572962.
JD459970 - Sequence 440994 from Patent EP1572962.
AY007105 - Homo sapiens clone TCCCIA00404 mRNA sequence.
BC016882 - Homo sapiens chromosome 22 open reading frame 9, mRNA (cDNA clone IMAGE:3915489), partial cds.
AK025608 - Homo sapiens cDNA: FLJ21955 fis, clone HEP05265.
AK094359 - Homo sapiens cDNA FLJ37040 fis, clone BRACE2011838.
AK124648 - Homo sapiens cDNA FLJ42657 fis, clone BRALZ2011796.
JD278460 - Sequence 259484 from Patent EP1572962.
JD527981 - Sequence 509005 from Patent EP1572962.
JD489541 - Sequence 470565 from Patent EP1572962.
JD348209 - Sequence 329233 from Patent EP1572962.
JD424814 - Sequence 405838 from Patent EP1572962.
BC038414 - Homo sapiens chromosome 22 open reading frame 9, mRNA (cDNA clone IMAGE:5175663), partial cds.
JD076078 - Sequence 57102 from Patent EP1572962.
JD371820 - Sequence 352844 from Patent EP1572962.
JD295140 - Sequence 276164 from Patent EP1572962.
JD206448 - Sequence 187472 from Patent EP1572962.
JD259197 - Sequence 240221 from Patent EP1572962.
JD558031 - Sequence 539055 from Patent EP1572962.
JD183130 - Sequence 164154 from Patent EP1572962.
JD040153 - Sequence 21177 from Patent EP1572962.
JD100691 - Sequence 81715 from Patent EP1572962.
JD051301 - Sequence 32325 from Patent EP1572962.
JD477817 - Sequence 458841 from Patent EP1572962.
JD500136 - Sequence 481160 from Patent EP1572962.
JD480188 - Sequence 461212 from Patent EP1572962.
JD530011 - Sequence 511035 from Patent EP1572962.
AK297058 - Homo sapiens cDNA FLJ55491 complete cds.
JD205519 - Sequence 186543 from Patent EP1572962.
JD456071 - Sequence 437095 from Patent EP1572962.
JD419790 - Sequence 400814 from Patent EP1572962.
JD021449 - Sequence 2473 from Patent EP1572962.
JD069232 - Sequence 50256 from Patent EP1572962.
AK309015 - Homo sapiens cDNA, FLJ99056.
JD027738 - Sequence 8762 from Patent EP1572962.
AK315883 - Homo sapiens cDNA, FLJ79532 complete cds.
JD395653 - Sequence 376677 from Patent EP1572962.
KJ902324 - Synthetic construct Homo sapiens clone ccsbBroadEn_11718 KIAA0930 gene, encodes complete protein.
AB384545 - Synthetic construct DNA, clone: pF1KA0930, Homo sapiens C22orf9 gene for C22orf9 protein, complete cds, without stop codon, in Flexi system.
JD068176 - Sequence 49200 from Patent EP1572962.
JD064843 - Sequence 45867 from Patent EP1572962.
JD339266 - Sequence 320290 from Patent EP1572962.
JD268805 - Sequence 249829 from Patent EP1572962.
JD155605 - Sequence 136629 from Patent EP1572962.
CU690998 - Synthetic construct Homo sapiens gateway clone IMAGE:100021698 5' read C22orf9 mRNA.
JD106310 - Sequence 87334 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B0QY17, B0QY19, B3KT48, C22orf9, K0930_HUMAN, NM_001009880, NP_001009880, Q6ICG6, Q6ZVE5, Q7Z6K9, Q8IZ76, Q9Y2E2
UCSC ID: uc003bfx.1
RefSeq Accession: NM_001009880
Protein: Q6ICG6 (aka K0930_HUMAN)
CCDS: CCDS33665.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001009880.1
exon count: 10CDS single in 3' UTR: no RNA size: 6215
ORF size: 1215CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2193.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.