Mouse Gene Dolpp1 (uc008jci.1) Description and Page Index
  Description: dolichyldiphosphatase 1
Transcript (Including UTRs)
   Position: mm9 chr2:30,247,936-30,256,047 Size: 8,112 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm9 chr2:30,247,957-30,254,698 Size: 6,742 Coding Exon Count: 8 

Page IndexSequence and LinksCTDMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated: 2011-03-02

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:30,247,936-30,256,047)mRNA (may differ from genome)Protein (238 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAllen Brain Atlas
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkMGIPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
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GNF Expression Atlas Data from U74a Mouse Chip

        
     
    
    
    
   
    
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Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.6021-0.457 Picture PostScript Text
3' UTR -552.701349-0.410 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016118 - P_Acid_Pase/Cl_peroxidase_N
IPR000326 - P_Acid_Pase_2/haloperoxidase

Pfam Domains:
PF01569 - PAP2 superfamily

SCOP Domains:
48317 - Acid phosphatase/Vanadium-dependent haloperoxidase

ModBase Predicted Comparative 3D Structure on A2AWJ4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserNo orthologNo orthologGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
GenBank Ensembl  SGD
Protein Sequence Protein Sequence  Protein Sequence
Alignment Alignment  Alignment

-  Descriptions from all associated GenBank mRNAs
  AK088065 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430003B06 product:RIKEN cDNA 0610011H20 gene, full insert sequence.
AK044141 - Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830094I04 product:hypothetical RELATED CAX4 COMPLETE CDS PRECURSOR THIOESTERASE PALMITOYL-PROTEIN MRNA CLONE:2-23 containing protein, full insert sequence.
AB030189 - Mus musculus mRNA, complete cds, clone:2-23.
AK002544 - Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610011H20 product:LSFR2 PROTEIN (FRAGMENT) homolog [Fugu rubripes], full insert sequence.
AK053923 - Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230001J18 product:RIKEN cDNA 0610011H20 gene, full insert sequence.
BC026544 - Mus musculus dolichyl pyrophosphate phosphatase 1, mRNA (cDNA clone MGC:35893 IMAGE:4975127), complete cds.
AK010797 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410136N23 product:LSFR2 PROTEIN (FRAGMENT) homolog [Fugu rubripes], full insert sequence.
AK183383 - Mus musculus cDNA, clone:Y0G0125L05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028209, based on BLAT search.
LF259635 - JP 2014500723-A/67138: Polycomb-Associated Non-Coding RNAs.
LF259636 - JP 2014500723-A/67139: Polycomb-Associated Non-Coding RNAs.
LF193237 - JP 2014500723-A/740: Polycomb-Associated Non-Coding RNAs.
MA428814 - JP 2018138019-A/740: Polycomb-Associated Non-Coding RNAs.
MA495212 - JP 2018138019-A/67138: Polycomb-Associated Non-Coding RNAs.
MA495213 - JP 2018138019-A/67139: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00510 - N-Glycan biosynthesis

-  Other Names for This Gene
  Alternate Gene Symbols: A2AWJ4, A2AWJ4_MOUSE, mCG_18292, NM_020329, NP_065062, RP23-395P6.7-001
UCSC ID: uc008jci.1
RefSeq Accession: NM_020329
Protein: A2AWJ4 CCDS: CCDS15881.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_020329.3
exon count: 8CDS single in 3' UTR: no RNA size: 2087
ORF size: 717CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1634.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.