Mouse Gene Napb (uc008mti.1) Description and Page Index
  Description: beta-soluble NSF attachment protein
Transcript (Including UTRs)
   Position: mm9 chr2:148,520,393-148,558,156 Size: 37,764 Total Exon Count: 11 Strand: -
Coding Region
   Position: mm9 chr2:148,523,132-148,558,099 Size: 34,968 Coding Exon Count: 11 

Page IndexSequence and LinksCTDMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2011-03-02

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:148,520,393-148,558,156)mRNA (may differ from genome)Protein (298 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
MGIPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
Ratios
    
     
      
       
     
    
   
Absolute
     
     
     
    
   
     
Ratios
     
     
     
    
   
     
Absolute

Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
Ratios
        
Absolute

GNF Expression Atlas Data from U74a Mouse Chip

        
     
    
    
    
   
    
Ratios
        
     
    
    
    
   
    
Absolute
    
     
    
Ratios
    
     
    
Absolute

Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -21.1057-0.370 Picture PostScript Text
3' UTR -827.692739-0.302 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000744 - NSF_attach
IPR011990 - TPR-like_helical

SCOP Domains:
81901 - HCP-like
48452 - TPR-like

ModBase Predicted Comparative 3D Structure on A2APW8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
GenBankRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  AK043917 - Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830050L07 product:weakly similar to BRAIN PROTEIN E161 [Mus musculus], full insert sequence.
AK039204 - Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230107G18 product:BRAIN PROTEIN E161 homolog [Mus musculus], full insert sequence.
AK048037 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130031E12 product:weakly similar to BRAIN PROTEIN E161 [Mus musculus], full insert sequence.
BC016125 - Mus musculus N-ethylmaleimide sensitive fusion protein attachment protein beta, mRNA (cDNA clone IMAGE:4511954), complete cds.
BC038362 - Mus musculus N-ethylmaleimide sensitive fusion protein attachment protein beta, mRNA (cDNA clone MGC:36510 IMAGE:5368175), complete cds.
AK083184 - Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630024D19 product:N-ethylmaleimide sensitive fusion protein attachment protein beta, full insert sequence.
X61450 - M.musculus mRNA for clone E161.
BC049874 - Mus musculus N-ethylmaleimide sensitive fusion protein attachment protein beta, mRNA (cDNA clone MGC:54909 IMAGE:5360432), complete cds.
X61455 - M.musculus mRNA for I47 clone.
AK078224 - Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430524F19 product:N-ethylmaleimide sensitive fusion protein attachment protein beta, full insert sequence.
LF264524 - JP 2014500723-A/72027: Polycomb-Associated Non-Coding RNAs.
LF193644 - JP 2014500723-A/1147: Polycomb-Associated Non-Coding RNAs.
LF193645 - JP 2014500723-A/1148: Polycomb-Associated Non-Coding RNAs.
MA429221 - JP 2018138019-A/1147: Polycomb-Associated Non-Coding RNAs.
MA429222 - JP 2018138019-A/1148: Polycomb-Associated Non-Coding RNAs.
MA500101 - JP 2018138019-A/72027: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A2APW8, A2APW8_MOUSE, mCG_1040573, NM_019632, NP_062606, RP23-377E1.3-001
UCSC ID: uc008mti.1
RefSeq Accession: NM_019632
Protein: A2APW8 CCDS: CCDS16842.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_019632.3
exon count: 11CDS single in 3' UTR: no RNA size: 3693
ORF size: 897CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1994.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.