Mouse Gene Pcdhgb7 (ENSMUST00000194928.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus protocadherin gamma subfamily B, 7 (Pcdhgb7), mRNA. (from RefSeq NM_033579)
Gencode Transcript: ENSMUST00000194928.1
Gencode Gene: ENSMUSG00000104063.1
Transcript (Including UTRs)
   Position: mm10 chr18:37,751,600-37,841,873 Size: 90,274 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr18:37,751,779-37,840,129 Size: 88,351 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:37,751,600-37,841,873)mRNA (may differ from genome)Protein (929 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: Q91XX3_MOUSE
DESCRIPTION: SubName: Full=MCG133388, isoform CRA_y; SubName: Full=Protocadherin gamma B7;
FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain (By similarity).
SIMILARITY: Contains 6 cadherin domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.90179-0.223 Picture PostScript Text
3' UTR -628.301744-0.360 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002126 - Cadherin
IPR015919 - Cadherin-like
IPR020894 - Cadherin_CS
IPR013164 - Cadherin_N

Pfam Domains:
PF00028 - Cadherin domain
PF08266 - Cadherin-like
PF15974 - Cadherin C-terminal cytoplasmic tail, catenin-binding region
PF16492 - Cadherin cytoplasmic C-terminal

SCOP Domains:
49313 - Cadherin-like

ModBase Predicted Comparative 3D Structure on Q91XX3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0046872 metal ion binding

Biological Process:
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AF464180 - Mus musculus protocadherin mRNA, complete cds.
BC167188 - Synthetic construct Mus musculus clone IMAGE:100068088, MGC:195705 protocadherin gamma subfamily A, 1 (Pcdhga1) mRNA, encodes complete protein.
AY013792 - Mus musculus protocadherin gamma A1 mRNA, complete cds.
AB093250 - Mus musculus mRNA for mKIAA0327 splice variant 1.
BC139178 - Mus musculus protocadherin gamma subfamily A, 2, mRNA (cDNA clone MGC:170805 IMAGE:8862200), complete cds.
AY013796 - Mus musculus protocadherin gamma A2 mRNA, complete cds.
BC060691 - Mus musculus protocadherin gamma subfamily A, 3, mRNA (cDNA clone MGC:66827 IMAGE:6409513), complete cds.
AY013797 - Mus musculus protocadherin gamma A3 mRNA, complete cds.
BC054741 - Mus musculus protocadherin gamma subfamily B, 1, mRNA (cDNA clone MGC:65699 IMAGE:5721217), complete cds.
BC098367 - Mus musculus protocadherin gamma subfamily B, 1, mRNA (cDNA clone MGC:101993 IMAGE:30362494), complete cds.
AY013804 - Mus musculus protocadherin gamma B1 mRNA, complete cds.
BC049814 - Mus musculus protocadherin gamma subfamily A, 4, mRNA (cDNA clone MGC:59581 IMAGE:6508140), complete cds.
AY013798 - Mus musculus protocadherin gamma A4 mRNA, complete cds.
BC054557 - Mus musculus protocadherin gamma subfamily B, 2, mRNA (cDNA clone MGC:62459 IMAGE:5706538), complete cds.
AY013805 - Mus musculus protocadherin gamma B2 mRNA, complete cds.
AF464152 - Mus musculus clone 2 protocadherin gamma B2 mRNA, partial cds.
AF464151 - Mus musculus clone 1 protocadherin gamma B2 mRNA, partial cds.
BC057404 - Mus musculus protocadherin gamma subfamily A, 5, mRNA (cDNA clone MGC:62507 IMAGE:6405582), complete cds.
AK043491 - Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730099K01 product:protocadherin gamma subfamily A, 5, full insert sequence.
AY013799 - Mus musculus protocadherin gamma A5 mRNA, complete cds.
BC059927 - Mus musculus protocadherin gamma subfamily A, 6, mRNA (cDNA clone IMAGE:6838828).
BC080852 - Mus musculus protocadherin gamma subfamily A, 6, mRNA (cDNA clone MGC:90624 IMAGE:6844625), complete cds.
AY013800 - Mus musculus protocadherin gamma A6 mRNA, complete cds.
BC077712 - Mus musculus protocadherin gamma subfamily A, 7, mRNA (cDNA clone MGC:66826 IMAGE:6825399), complete cds.
AY013801 - Mus musculus protocadherin gamma A7 mRNA, complete cds.
BC138701 - Mus musculus protocadherin gamma subfamily B, 4, mRNA (cDNA clone MGC:170328 IMAGE:8861723), complete cds.
AY013806 - Mus musculus protocadherin gamma B4 mRNA, complete cds.
BC054787 - Mus musculus protocadherin gamma subfamily A, 8, mRNA (cDNA clone MGC:65713 IMAGE:6825772), complete cds.
BC054555 - Mus musculus protocadherin gamma subfamily A, 8, mRNA (cDNA clone MGC:62443 IMAGE:5698395), complete cds.
AK220461 - Mus musculus mRNA for mKIAA0327 protein.
AY013802 - Mus musculus protocadherin gamma A8 mRNA, complete cds.
BC057403 - Mus musculus protocadherin gamma subfamily B, 5, mRNA (cDNA clone IMAGE:5704806), partial cds.
BC160199 - Synthetic construct Mus musculus clone IMAGE:100063847, MGC:193314 protocadherin gamma subfamily B, 5 (Pcdhgb5) mRNA, encodes complete protein.
AY013807 - Mus musculus protocadherin gamma B5 mRNA, complete cds.
BC079567 - Mus musculus protocadherin gamma subfamily A, 9, mRNA (cDNA clone MGC:90623 IMAGE:30536557), complete cds.
AY013803 - Mus musculus protocadherin gamma A9 mRNA, complete cds.
BC054556 - Mus musculus protocadherin gamma subfamily B, 6, mRNA (cDNA clone MGC:62446 IMAGE:5702016), complete cds.
AY013808 - Mus musculus protocadherin gamma B6 mRNA, complete cds.
LF201387 - JP 2014500723-A/8890: Polycomb-Associated Non-Coding RNAs.
BC035540 - Mus musculus protocadherin gamma subfamily A, 10, mRNA (cDNA clone MGC:40648 IMAGE:5400956), complete cds.
AY013793 - Mus musculus protocadherin gamma A10 mRNA, complete cds.
MA436964 - JP 2018138019-A/8890: Polycomb-Associated Non-Coding RNAs.
LF203372 - JP 2014500723-A/10875: Polycomb-Associated Non-Coding RNAs.
BC066823 - Mus musculus protocadherin gamma subfamily B, 7, mRNA (cDNA clone MGC:76584 IMAGE:30098739), complete cds.
LF204084 - JP 2014500723-A/11587: Polycomb-Associated Non-Coding RNAs.
AY013809 - Mus musculus protocadherin gamma B7 mRNA, complete cds.
LF254796 - JP 2014500723-A/62299: Polycomb-Associated Non-Coding RNAs.
LF254797 - JP 2014500723-A/62300: Polycomb-Associated Non-Coding RNAs.
BC064675 - Mus musculus protocadherin gamma subfamily A, 11, mRNA (cDNA clone MGC:66825 IMAGE:6406939), complete cds.
BC059837 - Mus musculus protocadherin gamma subfamily A, 11, mRNA (cDNA clone MGC:69643 IMAGE:5719590), complete cds.
AY013794 - Mus musculus protocadherin gamma A11 mRNA, complete cds.
BC139100 - Mus musculus protocadherin gamma subfamily B, 8, mRNA (cDNA clone MGC:170727 IMAGE:8862122), complete cds.
BC139099 - Mus musculus protocadherin gamma subfamily B, 8, mRNA (cDNA clone MGC:170726 IMAGE:8862121), complete cds.
AY013810 - Mus musculus protocadherin gamma B8 mRNA, complete cds.
BC056998 - Mus musculus protocadherin gamma subfamily A, 12, mRNA (cDNA clone MGC:66980 IMAGE:6831906), complete cds.
BC054528 - Mus musculus protocadherin gamma subfamily A, 12, mRNA (cDNA clone MGC:62248 IMAGE:5719201), complete cds.
U88550 - Mus musculus protocadherin 2C mRNA, complete cds.
AY013795 - Mus musculus protocadherin gamma A12 mRNA, complete cds.
AF464158 - Mus musculus clone 3 protocadherin gamma A12 mRNA, partial cds.
AF464156 - Mus musculus clone 1 protocadherin gamma A12 mRNA, partial cds.
BC059175 - Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone MGC:62397 IMAGE:5704674), complete cds.
BC098457 - Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone MGC:106426 IMAGE:30653042), complete cds.
AY013811 - Mus musculus protocadherin gamma C3 mRNA, complete cds.
AK086361 - Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930024A08 product:protocadherin gamma subfamily C, 3, full insert sequence.
BC040826 - Mus musculus protocadherin gamma subfamily C, 3, mRNA (cDNA clone IMAGE:4504356), partial cds.
AK193109 - Mus musculus cDNA, clone:Y1G0111B07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000003599, based on BLAT search.
BC064808 - Mus musculus protocadherin gamma subfamily C, 4, mRNA (cDNA clone MGC:66828 IMAGE:6825007), complete cds.
AY013812 - Mus musculus protocadherin gamma C4 mRNA, complete cds.
AK139349 - Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830020K06 product:protocadherin gamma subfamily C, 4, full insert sequence.
AF464163 - Mus musculus protocadherin gamma C-V mRNA, complete cds.
AF464164 - Mus musculus protocadherin gamma C-VI mRNA, complete cds.
BC138677 - Mus musculus protocadherin gamma subfamily C, 5, mRNA (cDNA clone MGC:170303 IMAGE:8861698), complete cds.
BC138678 - Mus musculus protocadherin gamma subfamily C, 5, mRNA (cDNA clone MGC:170304 IMAGE:8861699), complete cds.
AF464160 - Mus musculus protocadherin C5 gamma C-I mRNA, complete cds.
AY013813 - Mus musculus protocadherin gamma C5 mRNA, complete cds.
AF464162 - Mus musculus protocadherin gamma C-III precursor RNA, partial sequence.
AF464161 - Mus musculus protocadherin gamma C-II precursor RNA, partial sequence.
AK189050 - Mus musculus cDNA, clone:Y0G0147J12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK196255 - Mus musculus cDNA, clone:Y1G0121E11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK216085 - Mus musculus cDNA, clone:Y2G0137C13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK194976 - Mus musculus cDNA, clone:Y1G0117A01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK197575 - Mus musculus cDNA, clone:Y1G0125I02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
BC020414 - Mus musculus protocadherin gamma cluster, mRNA (cDNA clone IMAGE:3710220).
AK201201 - Mus musculus cDNA, clone:Y1G0137G13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK199484 - Mus musculus cDNA, clone:Y1G0131F23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK211122 - Mus musculus cDNA, clone:Y2G0120L16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK215122 - Mus musculus cDNA, clone:Y2G0134A15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK194695 - Mus musculus cDNA, clone:Y1G0116C19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK191527 - Mus musculus cDNA, clone:Y1G0106C21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK190826 - Mus musculus cDNA, clone:Y1G0103P03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK201042 - Mus musculus cDNA, clone:Y1G0136M17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK191127 - Mus musculus cDNA, clone:Y1G0104O18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK207596 - Mus musculus cDNA, clone:Y2G0108I02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
AK208673 - Mus musculus cDNA, clone:Y2G0112G06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000066149, based on BLAT search.
MA438949 - JP 2018138019-A/10875: Polycomb-Associated Non-Coding RNAs.
MA439661 - JP 2018138019-A/11587: Polycomb-Associated Non-Coding RNAs.
MA490373 - JP 2018138019-A/62299: Polycomb-Associated Non-Coding RNAs.
MA490374 - JP 2018138019-A/62300: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: mCG_133388, NM_033579, Q91XX3, Q91XX3_MOUSE, uc008era.1, uc008era.2, uc008era.3
UCSC ID: uc008era.3
RefSeq Accession: NM_033579
Protein: Q91XX3 CCDS: CCDS79633.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.