Schema for Crowd-Sourced Data - Crowd-sourced data: annotations contributed via bit.ly/cov2annots
  Database: wuhCor1    Primary Table: publicAnnots Data last updated: 2021-03-10
Big Bed File: /gbdb/wuhCor1/bbi/public.bb
Item Count: 149
Format description: Browser extensible data, with extended fields
fieldexampledescription
chromNC_045512v2Reference sequence chromosome or scaffold
chromStart19621Start position in chromosome
chromEnd20658End position in chromosome
nameORF1ab_endoRNAseShort Name of item
score0Score from 0-1000
strand++ or -
thickStart19621Start of where display should be thick (start codon)
thickEnd20658End of where display should be thick (stop codon)
reserved0Used as itemRgb as of 2004-11-22
extraField0proteinsCategory
extraField1EndoRNAse is a nonstructural protein that is a manganese-dependent, uridylate-specific enzyme leaving 2’-3’-cyclic phosphates 5’ to the cleaved bond.Long descriptive text
extraField2https://www.biorxiv.org/content/10.1101/2020.05.23.104919v14URL to website or paper with further info
extraField3kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.eduYour email

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreservedextraField0extraField1extraField2extraField3
NC_045512v21962120658ORF1ab_endoRNAse0+19621206580proteinsEndoRNAse is a nonstructural protein that is a manganese-dependent, uridylate-specific enzyme leaving 2’-3’-cyclic phosphate ...https://www.biorxiv.org/content/10.1101/202 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22065921552ORF1ab_nsp160+20659215520proteins2’-O-ribose methyltransferase is a heterodimer formed from NSP10 and NSP16. Its topology matches those of dengue virus NS5 N-t ...https://www.biorxiv.org/content/10.1101/202 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22107621104hCoV_F13_2kb0+21076211040primersForward (+ strand aln) 2kb primer sequence for long amplicon tiling multiplex approach using nanopore sequencing to recover whol ...https://www.biorxiv.org/content/10.1101 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22155921597S_SECReTE_motif0+21559215970RNASECReTE motif that facilitates mRNA localization to the ER, present more frequently in (+) ssRNA viruses which utilize ER membra ...https://www.biorxiv.org/content/10.1101 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22251723185binds_47D11_Anti...0+22517231850antibodiesEpitope of neutralizing antibody 47D11https://www.nature.com/articles/s41467-020-1625 ...maxh@ucsc.edu
NC_045512v22255822600S309_binding_site0+22558226000primersBinding site for neutralizing antibody S309https://www.biorxiv.org/content/10. ...jferna10@ucsc.edu
NC_045512v22260722639STE73_2G80+22607226390antibodiesNeutralizing antibody against RBD (receptor binding domain) of S1 subunit of viral spike (S) protein with 98% inhibition of spik ...https://www.biorxiv.org/content/10.1101 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22262122645S309_binding_site0+22621226450primersBinding site for neutralizing antibody S309https://www.biorxiv.org/content/10. ...jferna10@ucsc.edu
NC_045512v22266022663V367F_substituti...0+22660226630evolutionV->F substitution isolated in the S protein RBD region which binds with human ACE2 receptors. Isolated in strains from Hong Kong ...https://www.biorxiv.org/content/10. ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22266622678CR3022_binding0+22666226780antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu

Crowd-Sourced Data (publicAnnots) Track Description
 

Description

This track shows annotations made via a public spreadsheet available at http://bit.ly/cov2annots.

Anyone can add annotations to this spreadsheet. Once you have added a new annotation, the changes do not go live immediately, but are screened and automatically released on the public site during the next night.

To see the most up-to-date pre-release version of this track, click this link, which will attach a track hub to your current browser view.

Display Conventions and Configuration

Only start-end annotations can be shown. Contact us at genome-www@soe.ucsc.edu if you have feedback on the form, e.g. you need exon or intron lines or have datasets with more than 5-10 annotations.