Schema for dmBlastTab
  Database: hg19    Primary Table: dmBlastTab    Row Count: 5,975   Data last updated: 2013-06-17
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc003szn.3varchar(255) values Name of sequence in this assembly (query)
target CG12054-RAvarchar(255) values Name of sequence in other assembly (target)
identity 44.21float range Percent identity
aliLength 233int(10) unsigned range Length of alignment
mismatch 118int(10) unsigned range Number of mismatches
gapOpen 3int(10) unsigned range Number of gap openings
qStart 6int(10) unsigned range Start in query (0 based)
qEnd 230int(10) unsigned range End in query (non-inclusive)
tStart 1int(10) unsigned range Start in target (0 based)
tEnd 231int(10) unsigned range End in target (non-inclusive)
eValue 9.999999999999999e-43double range Expectation value
bitScore 169double range Bit score

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via dmBlastTab.query)
      hg19.ccdsKgMap.geneId (via dmBlastTab.query)
      hg19.ceBlastTab.query (via dmBlastTab.query)
      hg19.drBlastTab.query (via dmBlastTab.query)
      hg19.foldUtr3.name (via dmBlastTab.query)
      hg19.foldUtr5.name (via dmBlastTab.query)
      hg19.gnfAtlas2Distance.query (via dmBlastTab.query)
      hg19.gnfAtlas2Distance.target (via dmBlastTab.query)
      hg19.gnfU95Distance.query (via dmBlastTab.query)
      hg19.gnfU95Distance.target (via dmBlastTab.query)
      hg19.humanHprdP2P.query (via dmBlastTab.query)
      hg19.humanHprdP2P.target (via dmBlastTab.query)
      hg19.humanVidalP2P.query (via dmBlastTab.query)
      hg19.humanVidalP2P.target (via dmBlastTab.query)
      hg19.humanWankerP2P.query (via dmBlastTab.query)
      hg19.humanWankerP2P.target (via dmBlastTab.query)
      hg19.keggPathway.kgID (via dmBlastTab.query)
      hg19.kgAlias.kgID (via dmBlastTab.query)
      hg19.kgColor.kgID (via dmBlastTab.query)
      hg19.kgProtAlias.kgID (via dmBlastTab.query)
      hg19.kgProtMap2.qName (via dmBlastTab.query)
      hg19.kgSpAlias.kgID (via dmBlastTab.query)
      hg19.kgTargetAli.qName (via dmBlastTab.query)
      hg19.kgTxInfo.name (via dmBlastTab.query)
      hg19.kgXref.kgID (via dmBlastTab.query)
      hg19.knownBlastTab.query (via dmBlastTab.query)
      hg19.knownBlastTab.target (via dmBlastTab.query)
      hg19.knownCanonical.transcript (via dmBlastTab.query)
      hg19.knownGene.name (via dmBlastTab.query)
      hg19.knownGeneMrna.name (via dmBlastTab.query)
      hg19.knownGenePep.name (via dmBlastTab.query)
      hg19.knownGeneTxMrna.name (via dmBlastTab.query)
      hg19.knownGeneTxPep.name (via dmBlastTab.query)
      hg19.knownIsoforms.transcript (via dmBlastTab.query)
      hg19.knownToAllenBrain.name (via dmBlastTab.query)
      hg19.knownToEnsembl.name (via dmBlastTab.query)
      hg19.knownToGnfAtlas2.name (via dmBlastTab.query)
      hg19.knownToHInv.name (via dmBlastTab.query)
      hg19.knownToHprd.name (via dmBlastTab.query)
      hg19.knownToKeggEntrez.name (via dmBlastTab.query)
      hg19.knownToLocusLink.name (via dmBlastTab.query)
      hg19.knownToLynx.name (via dmBlastTab.query)
      hg19.knownToMupit.name (via dmBlastTab.query)
      hg19.knownToNextProt.name (via dmBlastTab.query)
      hg19.knownToPfam.name (via dmBlastTab.query)
      hg19.knownToRefSeq.name (via dmBlastTab.query)
      hg19.knownToSuper.gene (via dmBlastTab.query)
      hg19.knownToTreefam.name (via dmBlastTab.query)
      hg19.knownToU133.name (via dmBlastTab.query)
      hg19.knownToU133Plus2.name (via dmBlastTab.query)
      hg19.knownToU95.name (via dmBlastTab.query)
      hg19.knownToVisiGene.name (via dmBlastTab.query)
      hg19.knownToWikipedia.name (via dmBlastTab.query)
      hg19.mmBlastTab.query (via dmBlastTab.query)
      hg19.rnBlastTab.query (via dmBlastTab.query)
      hg19.scBlastTab.query (via dmBlastTab.query)
      hg19.ucscScop.ucscId (via dmBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via dmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via dmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.drBlastTab.query (via dmBlastTab.query)
      knownGeneV39.foldUtr3.name (via dmBlastTab.query)
      knownGeneV39.foldUtr5.name (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via dmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgColor.kgID (via dmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via dmBlastTab.query)
      knownGeneV39.kgXref.kgID (via dmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via dmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via dmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via dmBlastTab.query)
      knownGeneV39.knownCds.name (via dmBlastTab.query)
      knownGeneV39.knownGene.name (via dmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via dmBlastTab.query)
      knownGeneV39.knownGenePep.name (via dmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via dmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via dmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via dmBlastTab.query)
      knownGeneV39.knownToHprd.name (via dmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via dmBlastTab.query)
      knownGeneV39.knownToMrna.name (via dmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via dmBlastTab.query)
      knownGeneV39.knownToMupit.name (via dmBlastTab.query)
      knownGeneV39.knownToPfam.name (via dmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via dmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via dmBlastTab.query)
      knownGeneV39.knownToTag.name (via dmBlastTab.query)
      knownGeneV39.knownToU133.name (via dmBlastTab.query)
      knownGeneV39.knownToU95.name (via dmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via dmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via dmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via dmBlastTab.query)
      knownGeneV39.scBlastTab.query (via dmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc003szn.3CG12054-RA44.212331183623012319.999999999999999e-43169
uc003trd.3CG4326-RA35.79956101210771020.0000000000000273.9
uc003uid.3CG11144-RA47.648904081732872389200778
uc003syt.3CG11648-RE50.891125501602721182307.000000000000001e-23104
uc003tqg.3CG8860-RA86.5767900670671e-1887.4
uc003szf.3CG15093-RA49.49293146141334303213e-79291
uc003sym.4CG2189-RA81.52921521902803394312e-38156
uc003szd.1CG2328-RA70.197261178272651622e-34143
uc010eyh.3CG8739-RA39.0584044318081707942e-142503
uc010ggh.3CG8709-RB39.196152981230785240510142e-110397

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.