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Database: ornAna1 Primary Table: all_est Row Count: 47,782   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 85 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 1 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | DW586460 | varchar(255) | values | Query sequence name |
qSize | 86 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 86 | int(10) unsigned | range | Alignment end position in query |
tName | Contig100357 | varchar(255) | values | Target sequence name |
tSize | 875 | int(10) unsigned | range | Target sequence size |
tStart | 84 | int(10) unsigned | range | Alignment start position in target |
tEnd | 170 | int(10) unsigned | range | Alignment end position in target |
blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 86, | longblob | | Size of each block |
qStarts | 0, | longblob | | Start of each block in query. |
tStarts | 84, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 85 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | DW586460 | 86 | 0 | 86 | Contig100357 | 875 | 84 | 170 | 1 | 86, | 0, | 84, |
585 | 23 | 0 | 67 | 0 | 1 | 9 | 1 | 10 | - | DW586515 | 150 | 50 | 149 | Contig100357 | 875 | 398 | 498 | 2 | 73,17, | 1,83, | 398,481, |
585 | 59 | 1 | 66 | 0 | 1 | 2 | 1 | 3 | - | DW586528 | 179 | 50 | 178 | Contig100357 | 875 | 398 | 527 | 2 | 110,16, | 1,113, | 398,511, |
585 | 131 | 4 | 67 | 0 | 0 | 0 | 0 | 0 | - | DW586865 | 354 | 82 | 284 | Contig100357 | 875 | 398 | 600 | 1 | 202, | 70, | 398, |
585 | 132 | 2 | 67 | 0 | 0 | 0 | 1 | 1 | - | DW586878 | 202 | 0 | 201 | Contig100357 | 875 | 398 | 600 | 2 | 186,15, | 1,187, | 398,585, |
585 | 66 | 0 | 0 | 0 | 0 | 0 | 4 | 4 | + | DW586800 | 166 | 0 | 66 | Contig10094 | 17265 | 2407 | 2477 | 5 | 28,9,7,10,12, | 0,28,37,44,54, | 2407,2436,2446,2454,2465, |
585 | 99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586899 | 274 | 100 | 199 | Contig101541 | 884 | 214 | 313 | 1 | 99, | 75, | 214, |
585 | 250 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586842 | 392 | 68 | 320 | Contig101541 | 884 | 214 | 466 | 1 | 252, | 72, | 214, |
585 | 288 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586483 | 341 | 36 | 324 | Contig101541 | 884 | 214 | 502 | 1 | 288, | 17, | 214, |
585 | 325 | 0 | 0 | 0 | 1 | 11 | 1 | 11 | - | DW586649 | 477 | 67 | 403 | Contig101541 | 884 | 214 | 550 | 2 | 307,18, | 74,392, | 214,532, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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