Schema for all_mrna
  Database: petMar3    Primary Table: all_mrna    Row Count: 3,567   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 638smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 647int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 6370int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AY130404varchar(255) values Query sequence name
qSize 652int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 652int(10) unsigned range Alignment end position in query
tName PIZI01000001v1varchar(255) values Target sequence name
tSize 27620446int(10) unsigned range Target sequence size
tStart 6957882int(10) unsigned range Alignment start position in target
tEnd 6964904int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 64,167,138,110,173,longblob   Size of each block
qStarts 0,64,231,369,479,longblob   Start of each block in query.
tStarts 6957882,6959366,6961998,696...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      petMar3.all_est.qName (via all_mrna.qName)
      petMar3.mrnaOrientInfo.name (via all_mrna.qName)
      petMar3.xenoRefGene.name (via all_mrna.qName)
      petMar3.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6386475000046370+AY1304046520652PIZI01000001v12762044669578826964904564,167,138,110,173,0,64,231,369,479,6957882,6959366,6961998,6963736,6964731,
655108912032031291911-KU6807351429131429PIZI01000001v12762044691918969194911277,15,24,84,10,16,16,6,296,55,7,247,19,14,3,13,16,7,9,20,15,15,38,14,43,34,61,0,8,24,48,133,144,161,178,185,482,538,545,825,844,859,863,877,893,901,912,932,947,1211,1250,1266,1310,1355,9191896,9191903,9191918,9191944,9192028,9192038,9192054,9192070,9192076,9192372,9192427,9192435,9193217,9193237,9193251,9193254, ...
655590000000+KT235764261197256PIZI01000001v12762044691938859193944159,197,9193885,
658240000001105+KU7266182400240PIZI01000001v12762044696034309603775273,167,0,73,9603430,9603608,
6658841000076693-KT4625648850885PIZI01000001v12762044610577287105848658129,135,125,50,122,78,188,58,0,129,264,389,439,561,639,827,10577287,10578350,10579420,10580206,10580258,10581035,10583599,10584807,
7171538304518511274-EU086587156301563PIZI01000001v12762044617389421174022401186,53,90,38,164,734,14,5,108,83,170,0,86,142,232,270,434,1169,1195,1200,1309,1393,17389421,17389542,17389595,17389686,17392077,17401116,17401850,17401864,17401879,17401987,17402070,
775486816006141036486+JN242000491104898PIZI01000001v12762044624965772250071421774,6,62,240,120,160,76,1502,129,1189,212,58,183,33,116,174,550,0,74,80,142,382,502,664,740,2242,2371,3561,3773,3836,4020,4053,4172,4348,24965772,24965847,24966155,24987082,24993785,24997405,24997565,25001167,25003214,25004622,25005811,25006026,25006084,25006267,25 ...
612149500022734503+EU089674149701497PIZI01000002v127533741353934535753431048,109,109,84,272,58,235,119,142,319,0,48,157,267,352,624,682,917,1036,1178,3539345,3558008,3558118,3558227,3558311,3566889,3567586,3570315,3571724,3575024,
61520396000044085-D55629204502045PIZI01000002v1275337414016906402303651066,164,588,175,52,0,1066,1230,1818,1993,4016906,4017974,4018140,4020522,4022984,
8481560000516055+FJ4617778280821PIZI01000002v12753374111660011116768876111,96,89,296,106,123,0,111,207,296,592,698,11660011,11661406,11662590,11673255,11674702,11676764,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.