3P-seq tracks Track Settings
 
3P-seq tracks

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  Enumerated stage↓1 Sequencing sample↓2 Track kind↑3   Track Name↓4  
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 00 1-cell  DCD007845DT  signal  1-cell, Bartel_Lab, GSE37453   Schema 
dense
 00 1-cell  DCD007845DT  tc  1-cell, Bartel_Lab, nan, GSE37453   Schema 
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 03 16-cell  DCD007846DT  signal  16-cell, Bartel_Lab, GSE37453   Schema 
dense
 03 16-cell  DCD007846DT  tc  16-cell, Bartel_Lab, nan, GSE37453   Schema 
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 03 16-cell  DCD007847DT  signal  16-cell, Bartel_Lab, GSE37453   Schema 
dense
 03 16-cell  DCD007847DT  tc  16-cell, Bartel_Lab, nan, GSE37453   Schema 
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 03 16-cell  DCD007848DT  signal  16-cell, Bartel_Lab, GSE37453   Schema 
dense
 03 16-cell  DCD007848DT  tc  16-cell, Bartel_Lab, nan, GSE37453   Schema 
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 12 Sphere  DCD007850DT  signal  Sphere, Bartel_Lab, GSE37453   Schema 
dense
 12 Sphere  DCD007850DT  tc  Sphere, Bartel_Lab, nan, GSE37453   Schema 
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 17 Shield  DCD007851DT  signal  Shield, Bartel_Lab, GSE37453   Schema 
dense
 17 Shield  DCD007851DT  tc  Shield, Bartel_Lab, nan, GSE37453   Schema 
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 27 Prim-5  DCD007853DT  signal  Prim-5, Bartel_Lab, GSE37453   Schema 
dense
 27 Prim-5  DCD007853DT  tc  Prim-5, Bartel_Lab, nan, GSE37453   Schema 
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 33 Protruding-mouth  DCD007854DT  signal  Protruding-mouth, Bartel_Lab, GSE37453   Schema 
dense
 33 Protruding-mouth  DCD007854DT  tc  Protruding-mouth, Bartel_Lab, nan, GSE37453   Schema 
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 38 90 Days-2 Years  DCD007855DT  signal  90_Days-2_Years, Bartel_Lab, GSE37453   Schema 
dense
 38 90 Days-2 Years  DCD007855DT  tc  90_Days-2_Years, Bartel_Lab, nan, GSE37453   Schema 
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 38 90 Days-2 Years  DCD007856DT  signal  90_Days-2_Years, Bartel_Lab, brain, GSE37453   Schema 
dense
 38 90 Days-2 Years  DCD007856DT  tc  90_Days-2_Years, Bartel_Lab, brain, GSE37453   Schema 
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 38 90 Days-2 Years  DCD007857DT  signal  90_Days-2_Years, Bartel_Lab, ovary, GSE37453   Schema 
dense
 38 90 Days-2 Years  DCD007857DT  tc  90_Days-2_Years, Bartel_Lab, ovary, GSE37453   Schema 
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 38 90 Days-2 Years  DCD007858DT  signal  90_Days-2_Years, Bartel_Lab, testis, GSE37453   Schema 
dense
 38 90 Days-2 Years  DCD007858DT  tc  90_Days-2_Years, Bartel_Lab, testis, GSE37453   Schema 
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 27 Prim-5  DCD007934DT  signal  Prim-5, Bartel_Lab, GSE32880   Schema 
dense
 27 Prim-5  DCD007934DT  tc  Prim-5, Bartel_Lab, nan, GSE37453   Schema 
full
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 33 Protruding-mouth  DCD007943DT  signal  Protruding-mouth, Bartel_Lab, GSE32880   Schema 
dense
 33 Protruding-mouth  DCD007943DT  tc  Protruding-mouth, Bartel_Lab, nan, GSE37453   Schema 
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 38 90 Days-2 Years  DCD007947DT  signal  90_Days-2_Years, Bartel_Lab, GSE32880   Schema 
dense
 38 90 Days-2 Years  DCD007947DT  tc  90_Days-2_Years, Bartel_Lab, nan, GSE37453   Schema 
    

3P-seq tracks

This is a 3P-seq super track that groups together signal (bigWig format) and tag clusters of transription end site (TES) (bigBed format). These tracks were produced by the DANIO-CODE 3P-seq pipeline.

The DANIO-CODE 3P-seq pipeline consists of 5 steps:
#.Step 1. Filter raw data #.Step 2. Quality Control (FastQC) #.Step 3. Mapping to reference genome (Bowtie) #.Step 4. Obtaining Transcription End Sites (TES) from 3P-seq data #.Step 5. Generating Tag Clusters of TES (Paraclu-9)

Track definition: 3P-seq tracks consist of 2 parts: #. 3P-seq TES signals #. and 3P-seq tag clusters of TES

For more information on how the data were processed, please refer https://gitlab.com/danio-code/DANIO-CODE_3P-seq.