HiC tracks Track Settings
 
HiC tracks

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Type of graph:
Track height: pixels (range: 8 to 128)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 127)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
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Select subtracks by developmental stage and window size for index calculation:
 All Developmental stage 256-cell  Dome  75%-epiboly  Prim-5 
Window size for index calculation
50kb 
500kb 
1MB 
Select subtracks further by: (select multiple categories and items - help)
Index type:
Sequencing sample:
Enumerated stage:

List subtracks: only selected/visible    all    ()
  Enumerated stage↓1 Sequencing sample↓2   Track Name↓3  
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 1000000, directionality_index   Schema 
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 1000000, insulation_index   Schema 
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 50000, directionality_index   Schema 
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 50000, insulation_index   Schema 
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 500000, directionality_index   Schema 
full
 Configure
 07 256-cell  DCD003008SQ  256-cell, de Wit Lab, GSE105015, 500000, insulation_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 1000000, directionality_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 1000000, insulation_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 50000, directionality_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 50000, insulation_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 500000, directionality_index   Schema 
full
 Configure
 18 75%-epiboly  DCD002998SQ  75%-epiboly, de Wit Lab, GSE105015, 500000, insulation_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 1000000, directionality_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 1000000, insulation_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 50000, directionality_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 50000, insulation_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 500000, directionality_index   Schema 
full
 Configure
 13 Dome  DCD003013SQ  Dome, de Wit Lab, GSE105015, 500000, insulation_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 1000000, directionality_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 1000000, insulation_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 50000, directionality_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 50000, insulation_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 500000, directionality_index   Schema 
full
 Configure
 27 Prim-5  DCD003041SQ  Prim-5, de Wit Lab, GSE105015, 500000, insulation_index   Schema 
    

HiC tracks consist of bigWig files containing insulation (Crane et al., 2015) and directionality index (Dixon et al., 2012) with varying window sizes (Kruse et al., 2016) of 50k, 500k, and 1Mb respectively.