This is a RNA-seq super track that groups together signal of RNA-seq data (bigWig format) of stranded and unstranded RNA-seq samples.
regions (bigBed format).
Reference genome index generation (one time only).
Alignment files with STAR: The part of the pipeline which maps the reads to the reference genome.
Quality control of alignment: The second step which controls the quality of the alignments from STAR.
bedGraph to bigWig signal conversion.
Track definition:
RNA-seq tracks consist of 2 different types:
#. RNA-seq signals for stranded samples, which consist of positive and negative strands.
#. RNA-seq signals for stranded samples, which consist of collapsed positive strands.