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Configure Image - Genome Browser V505
 
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Configure Tracks on UCSC Genome Browser: D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Hub: EPD Viewer Hub    
H3K4me3 H3K4me3 in S2 cells from Gan et al., 2010
Pol2 Pol2 in S2 cells from Gan et al., 2010
All CAGE (+) All modENCODE CAGE samples
CAGE Selected modENCODE CAGE samples
All CAGE (-) All modENCODE CAGE Minus
EPDnew EPDnew promoters
+   Mapping and Sequencing    
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR CRISPR/Cas9 Sp. Pyog. target sites
     CRISPR Targets     CRISPR/Cas9 -NGG Targets
     CRISPR Regions     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp)
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-D. melanogaster RefSeq Genes
Pfam in RefSeq Pfam Domains in RefSeq Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Spliced ESTs D. melanogaster ESTs That Have Been Spliced
D. melanogaster ESTs D. melanogaster ESTs Including Unspliced
D. melanogaster mRNAs D. melanogaster mRNAs from GenBank
Other mRNAs Non-D. melanogaster mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
ORegAnno Regulatory elements from ORegAnno
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (27 Species)
Cons 124 Insects Multiz Alignment & Conservation (124 insects)
Insects Chain/Net Insects Chain and Net Alignments
-   Variation and Repeats    
EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
RepeatMasker Repeating Elements by RepeatMasker