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Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
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Display description above each track
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Show exon numbers
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Configure Tracks on UCSC Genome Browser: Zebrafish Sep. 2014 (GRCz10/danRer10)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   DANIO-CODE Track Hub    
ATAC-seq tracks ATAC-seq tracks
BS-seq tracks BS-seq tracks
CAGE-seq tracks CAGE-seq tracks
ChIP-seq tracks ChIP-seq tracks
HiC tracks HiC tracks
MNase-seq tracks MNase-seq tracks
RNA-seq tracks RNA-seq tracks
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
updated Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Zebrafish RefSeq Genes
TransMap V5... TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
ZGC Genes Zebrafish Gene Collection Full ORF mRNAs
-   mRNA and EST    
Other mRNAs Non-Zebrafish mRNAs from GenBank
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
CpG Islands... CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Turkey Chain/Net Turkey (Nov. 2014 (Turkey_5.0/melGal5)), Chain and Net Alignments
Chicken Chain/Net Chicken (Dec 2015 (Gallus_gallus-5.0/galGal5)), Chain and Net Alignments
Rat Chain/Net Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
WM + SDust Genomic Intervals Masked by WindowMasker + SDust