Multiz Alignments of 20 mammals (17 primates)
 

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Alignment block 1 of 231 in window, 32607653 - 32607710, 58 bps 
B D                     Human  cagcaga------aacatcctaccttctttcagggcctggagtaggagtctccttctggggagg
B D                     Chimp  cagcaga------aacatcctaccttctttcagggcctggagtaggagtctccttctggggagg
B D                    Bonobo  cagcaga------aacatcctaccttctttcagggcctggagtaggagtctccttctggggagg
B D                   Gorilla  cagcaga------aacgtcctaccttctttcagggcctggagtaggagtctccttctggggagg
B D                 Orangutan  cagcaga------aacgtccttccttctttcagggcctggcgta-gagtctccttctggggggg
B D                    Rhesus  cagcaga------aacgtcctaccttctttcggggcttggcgtaggagtctccttctggggagg
B D       Crab-eating macaque  cagcaga------aacgtcctaccttctttcggggcttggcgtaggagtctccttctggggagg
B D                    Baboon  cagcaga------aacgtcctaccttctttcagggcttggcgtaggagtctccttctggggagg
B D              Green monkey  cagcaga------aacgtcctaccttctttcggggcttggcgtaggagtctccttctggggagg
B D          Proboscis monkey  cagcaga------aacgtcctaccttctttccgggcttagcgtaggagtctccttctggggagg
B D  Golden snub-nosed monkey  cagcaga------aacgtcctaccttctttccgggcttagcgtaggagtctccttctggggagg
B D                  Marmoset  cagcagccatgg-atcttcctcccttctttcagggattggtgtaggagtgtc---ctggggagg
B D           Squirrel monkey  ccgcagccatggaatcttcctcccttctttcagggcttggcgtaggcgtctc---ctggggagg
B D                       Dog  --gcagc------a----------ttcacgcag--------gcagaagtctccttctggggagg
B D                     Mouse  ================================================================
B D                Tree shrew  ================================================================
B D                  Bushbaby  ================================================================
B D               Mouse lemur  ================================================================
B D                   Tarsier  ================================================================
B D                    Gibbon  ================================================================

Alignment block 2 of 231 in window, 32607711 - 32608159, 449 bps 
B D                     Human  -cccagcccgtgccctgtctaccatcctgacc-----actgcctggcccttccccacc----tgtcccct
B D                     Chimp  -cccagcccgtgccctgtctaccatcctgacc-----actgcctggcccttccccacc----tgtcccct
B D                    Bonobo  -cccagcccgtgccctatctaccatcctgacc-----actgcctggcccttccccacc----tgtcccct
B D                   Gorilla  -cccagcccgtgccctgtctaccatcctgacc-----actgcctggcccttccccacc----tgtcccct
B D                 Orangutan  -cccagcccatgccctgtccaccatcctgacc-----actgcctggcccttccccagc----tgtcccct
B D                    Gibbon  -cccagcccgtgccctgtccaccat-ctgacc-----actgcctggcccatccccacc----tgtcccct
B D                    Rhesus  -cccagcccgtgccctgtccaccatcctgacc-----accgcctggcccttcccgacc----tgttccct
B D       Crab-eating macaque  -cccagcccgtgccctgtccaccatcctgacc-----accgcctggcccttcccgacc----tgttccct
B D                    Baboon  -cccagcccgtgccctgtccaccatcgtgacc-----accgcctggcccttcctgacc----tgttccct
B D              Green monkey  -cccagcccgtgccctgtccaccatcctgacc-----actgcctggcccttcccgacc----tgttccct
B D          Proboscis monkey  -cccagcccgtgccctgtccaccatcctgacc-----actgcctggcccttcccgacc----tgttccct
B D  Golden snub-nosed monkey  -cccagccagtgccctgtccaccatcctgacc-----actgcctggcccttcccgacc----tgttccct
B D                  Marmoset  -cccagcccgcgccctgtccactgtcctgatc-----tccgcctggcctttcccaccc----agccccct
B D           Squirrel monkey  -cccagcccacgccctgcccgctgtcctgacctgacgtccgcctggcctttcccatcc----agccccct
B D                       Dog  ccttctctggggccctagccacaatctcgacctgccacctgccactcccttctcctccacattttctctc
B D                     Mouse  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  ======================================================================
B D                   Tarsier  ======================================================================

                        Human  tctctcttctgtgctgtcctca--cacaccacctatttcatctgtttaccatgtttgtcgtagg-ttctc
                        Chimp  tctctcttctgtgctgtcctca--cacaccacctatttcatctgtttaccatgtttgtcgtagg-ttctc
                       Bonobo  tctctcttctgtgctgtcctca--cacaccacctatttcatctgtttaccatgtttgtcgtagg-ttctc
                      Gorilla  tctctcttctgtgctgtcctca--cacaccacctatttcatctgtttaccatgtttgtcatggg-ttctc
                    Orangutan  cctctcttctgtgctgccctca--cacaccacctatttcatctgtttaccatgtttgtcgtggg-ttctc
                       Gibbon  cctctcttctgtgctgtcctca--cacaccacctatttcatctgtttatcatgtttgtcgtggg-ttctc
                       Rhesus  cctctcttctgtgctctcctca--cacaccacctatttcatctgtttaccatgtttgtagtggg-ttctc
          Crab-eating macaque  cctctcttctgtgctctcctca--cacaccacctatttcatctgtttaccatgtttgtagtggg-ttctc
                       Baboon  cctctcttctgtgctctcctca--cacaccacctatttcatctgtttaccatgtttgtagtgag-ttctc
                 Green monkey  cctctcttctgtgctctcctca--cacaccacctatttcatctctttaccatgtttgtagtggg-ttctc
             Proboscis monkey  cctctcttctgtgctgtcctca--cacaccacctatttcatctgcttaccatgtttgtagtggg-ttctc
     Golden snub-nosed monkey  cctctcttctgtgctctcctca--cacaccacctatttcatctgcttaccatgtttgtagtggg-ttctc
                     Marmoset  cctctcttctgtgccctcctca--cacaccacccacttcatctgtttaccgtgtttctggtggg-ttctc
              Squirrel monkey  cctctcttctgtgccctcctca--cacaccacccatttcatctgtttaccatgtttctggtggg-ttctc
                          Dog  tctccccttagtacttaccacagtctcacagactgtgcactttacttactgtgtttatagccgtcccctc
                        Mouse  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================
                      Tarsier  ======================================================================

                        Human  ccaggagggcagggctttgggcctg-------tgttcacgccgccttgccc-gggcctagaatagggcct
                        Chimp  ccaggagggcagggctttgggcct--------tgttcacgccgccttgccc-gggcctagaataggacct
                       Bonobo  ccaggagggcagggctttgggcct--------tgttcacgccgccttgccc-gggcctagaataggacct
                      Gorilla  ccaggagggcagggctttgggcctg-------tgttcacgccgccttgccc-gggcctagaatagggcct
                    Orangutan  ccaggagggcagggctttgggcctg-------tgttcgcgccgcctccccc-gggcctagaatagggcct
                       Gibbon  ccaggagggcagggctttgggcctg-------tgttcgcgccgcctccccc-gggcctagaatagggcct
                       Rhesus  ccaggagggcagggctttgggcctg-------tgttcgcgctgcctccccc-gggcctagaatagggcct
          Crab-eating macaque  ccaggagggcagggctttgggcctg-------tgttcgcgctgcctccccc-gggcctagaatagggcct
                       Baboon  ccaggagggcagggctttgggcctg-------tgttcgtgctgcctccccc-gggcctagaatagggcct
                 Green monkey  ccaggagggcagggctttgggcccg-------tgttcgcgctgcctccccc-gggcctagaatagggcct
             Proboscis monkey  ccaggagggcagggctttgggcctg-------tgttcgcgctgcctccccc-gggcctagaatagggcct
     Golden snub-nosed monkey  ccaggagggcagggctttgggcctg-------tgttcgcgctgcctcccct-gggcctagaatagggcct
                     Marmoset  ccaggagaccagggctttgggcctg-------tgtttgtgcc-cctcccccggggcctagatcagggcct
              Squirrel monkey  ccaggaggccagggctttgggcctg-------tgtttgtgccacctctcccggggcctagaacagggcct
                          Dog  ccaggtgggcagggatttgtgctgggctcagacgctcctgaggcctccctt-gggtctcgaacagggtct
                        Mouse  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================
                      Tarsier  ======================================================================

                        Human  ggc------------c-tgcagccgggagccaggc--tgctcgctcttggtgaaagagtgcccaggaggg
                        Chimp  ggc------------c-tgcagccgggagccaggc--tgctcgctcttggtgaaagagtgcccaggaggg
                       Bonobo  ggc------------c-tgcagccgggagccaggc--tgctcgctcttggtgaaagagtgcccaggaggg
                      Gorilla  ggc------------c-tgcagccgggagccaggc--tgctcgctcttggtgaaagagtgcccaggaggg
                    Orangutan  ggc------------c-tgcagccgggagccaggc------cgctcttggtgaaggagtgcccaggaggg
                       Gibbon  ggc------------a-tgcagccgggagccaggc------cgctct---tgaaggagtgcccaggaggg
                       Rhesus  ggc------------c-tgcagccgggagccaggc------cgctcttggtgaaggagtgcccaggaggg
          Crab-eating macaque  ggc------------c-tgcagccgggagccaggc------cgctcttggtgaaggagtgcccaggaggg
                       Baboon  ggc------------c-tgcagccgggagccaggc------cgctcttggtgaaggagtgcccaggaggg
                 Green monkey  ggc------------c-tgcagctgggagccaggc------cgctcttggtgaaggagtgcccaggaggg
             Proboscis monkey  ggc------------c-tgcagccgggagccaggc------cgttcttggtgaaagagtgcccaggaggg
     Golden snub-nosed monkey  ggc------------c-tgcagccgggagccaggc------cgttcttggtgaaagagtgcccaggaggg
                     Marmoset  ggatcagggcctggcc-tgcagccgggagaccagc------tgcccttggcaaaggagtgcccaggagag
              Squirrel monkey  gga------------c-tgcagccgggagccgggc------tgcccttggcaaaggagtgcccaggaggg
                          Dog  ggc------------caggcggtcagaag---ggctttaaaaagcctggatctagggatgcct--gggtg
                        Mouse  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================
                      Tarsier  ======================================================================

                        Human  gcacagtgagggcatgcagggtgagagctctcagggcctgggcgcggctatggcaacgcagcctatgcct
                        Chimp  gcacagtgagggcatgcagggtgagagctcgcagggcctgggcgcggctatggcaacgcagcctatgcct
                       Bonobo  gcacagtgagggcatgcagggtgagagctcgcagggcctgggcgcggctatggcaacgcagcctatgcct
                      Gorilla  gcacagtgagggcatgcagggtgagggctcgcagggcctgggcgcggctatggcaacgcagcctatgcct
                    Orangutan  gtacagtgagggcaggcagggtgagagctcacggggcctgggcgcagctatggcaacgcagcctatgcct
                       Gibbon  gcacagtgagggcatgcaggatgagagctcgcggggcccgggcgcggctatggcaacgcagcctatgcct
                       Rhesus  gcacagtgagggcatgcagggtgagagctcaaggggcctgggcgcggctgtagcaatgcaacctatgcct
          Crab-eating macaque  gcacagtgagggcatgcagggtgagagctcaaggggcctgggcgcggctgtagcaatgcaacctatgcct
                       Baboon  gcacagtgagggcatgcagggtgagagctcaaggggcctgggcgcggctgtagcaatgcaacctatgcct
                 Green monkey  gcacagtgagggcatgcagggtgagagctcaaggggcctgggcgcggctgtagcaacgcaacctatgcct
             Proboscis monkey  gcacagtgagggcatgcagggtgagagctcacggggcctgggcgcggctgtggcaacacaacctgtgcct
     Golden snub-nosed monkey  gcacagtgaaggcatgcagggtgagagctcacggggcctgggcgcggctgtggcaacacaacctgtgcct
                     Marmoset  gcacggtgcaagcgtgcaaggtgagagctcgagtgacctacgtgcggctgtggcaacacagcctatgcct
              Squirrel monkey  gcatggtgcgggcgtgcaaggtgagagctcgagtgacctaggtgtggctgtggcagtgcagcctatgcct
                          Dog  gctcagtggttgagtcctggccttcagctca---gatcttgaccctggggt----------cctgggatg
                        Mouse  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================
                      Tarsier  ======================================================================

                        Human  gccagtcccttggcggggcctgtggcctccctgccttcactgctgtccacggctctcactggccctgcct
                        Chimp  gccagtcccttggcggggcctgtggcctccctgccttcactgctgtccacggctctcactggccctgcct
                       Bonobo  gccagtcccttggtggggcctgtggcctccctgccttcactgctgtccacggctctcactggccctgcct
                      Gorilla  gccagtcccttggcggggcctgtggcctccctgccttcactgctgtccacggctctcactggccctgcct
                    Orangutan  gccagtccctcggcggggcctgtgtcctccctgcctgcactgctgtccacggctctcactggccctgcct
                       Gibbon  gccagtccctcggtggagcttgtggcctccctgccttcactgccatccacggctctcactggccctgcct
                       Rhesus  gccagtccctcagcggggcctgtggcctccctgccttcactgctgtccacagctctcactggccctgcct
          Crab-eating macaque  gccagtccctcagcggggcctgtggcctccctgccttcactgctgtccacagctctcactggccctgcct
                       Baboon  gccagtccctcagtggggcctgtggcctccctgccttcactgctgtccacagctctcactggccctgcct
                 Green monkey  gccagtccctcagcggggcctgtggcctccctgccttcactgctatccacagctctcactggccctgcct
             Proboscis monkey  gccagtccctcagcgggacctgtggcctccctgccttcactgctatccacagctctcactggccctgcct
     Golden snub-nosed monkey  gccagtccctcagtgggacctgtggcctccctgccttcactgctatccacagctctcactggccctgcct
                     Marmoset  gccagtcccttggcgtggcctgtggcct-cctgccgtcactgctgtctgcagctctcactggccctgtct
              Squirrel monkey  gccagtcccttggcgtggcctgtggcct-cctgccgtcactgccgtctgcagctgtcactggccctgcct
                          Dog  g--agtcccacattgg-------------------------gctccccacag-------ggaacctgctt
                        Mouse  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================
                      Tarsier  ======================================================================

                        Human  t-cctccggcctgtggccccactcagacccaccccattccccac---aatggatgtcagaaaggccttt
                        Chimp  t-cctccggcctgtggccccactcagacccaccccattccccac---aatggatgtcagaaaggccttt
                       Bonobo  t-cctccggcctgtggccccactcagacccaccccattccccac---aatggatgtcagaaaggccttt
                      Gorilla  t-cctccggcctgtggccccactcagacccaccccattccccac---aatggatgccagaaaggccttt
                    Orangutan  t-cctccagcctgtggccccactcagacccatcccattccccac---agtggatgccagaaaggcctgt
                       Gibbon  t-cctccagcctgtggccccactcagacccaccccgttccccac---aatggatgccagaaaggccttt
                       Rhesus  c-cctccagcccgtggccccattcagacccaccccatttcccat---aatggatgccagaaaggccttt
          Crab-eating macaque  c-cctccagcccgtggccccattcagacccaccccatttcccat---aatggatgccagaaaggccttt
                       Baboon  c-cctccagcccgtggccccattcagacccaccccatttcccat---aatggatgccagaaaggtcttt
                 Green monkey  c-cctccagcccgtggccccactcagacccaccccgtttcccat---aatggatgccagaaaggccttg
             Proboscis monkey  c-cctccagcccgtggccccacttagacccaccccgtttcccat---aatggatgccagaaaggccttt
     Golden snub-nosed monkey  c-cctccagcccgtggccccacttagacccaccccgtttcccat---aatggatgccagaaaggccttt
                     Marmoset  c-cctccggcctgtggccccactcagacccagtccgttccccaa---aagagatgccagaagggccttt
              Squirrel monkey  c-cctccggcctgtggctccgctcagacccaccccgttccccgc---aacagatgccagaagggccttt
                          Dog  ctccctctgcctgtgtctctgctt---ctctctgtgtgtctctcgtgaataaatg--aataaaatcttt
                        Mouse  =====================================================================
                   Tree shrew  =====================================================================
                     Bushbaby  =====================================================================
                  Mouse lemur  =====================================================================
                      Tarsier  =====================================================================

Alignment block 3 of 231 in window, 32608160 - 32608173, 14 bps 
B D                     Human  ---------------------aaaaacctggatct
B D                     Chimp  ---------------------aaaaacctggatct
B D                    Bonobo  ---------------------aaaaacctggatct
B D                   Gorilla  ---------------------aaaaacctggatct
B D                 Orangutan  ---------------------aaaaacctggatct
B D                    Gibbon  ---------------------aaaaacctggatct
B D                    Rhesus  ---------------------aaaaaactgaacct
B D       Crab-eating macaque  ---------------------aaaaaactgaacct
B D                    Baboon  ---------------------taaaaactgaacct
B D              Green monkey  ---------------------aaaaaactgaacct
B D          Proboscis monkey  ---------------------aaaaaactgaacct
B D  Golden snub-nosed monkey  ---------------------aaaaaactgaacct
B D                  Marmoset  ---------------------aaaaacctggacct
B D           Squirrel monkey  ---------------------aaaaacctggacct
B D                   Tarsier  ---------------------aaaaacctggact-
B D                       Dog  aaaaaaaaaaaaaaagaaatcaaaagcctggatct
B D                     Mouse  ===================================
B D                Tree shrew  ===================================
B D                  Bushbaby  ===================================
B D               Mouse lemur  ===================================

Inserts between block 3 and 4 in window
B D                 Marmoset 307bp
B D          Squirrel monkey 697bp

Alignment block 4 of 231 in window, 32608174 - 32608301, 128 bps 
B D                     Human  aattatgtcaccccctcccctgagccctgcagtggctgccggtggccctcgggatcatgtccagagtccc
B D                     Chimp  aattatgtcaccccctcccctgagccctgcagtggctgccggtggccctcgggatcatgtccagagtccc
B D                    Bonobo  aattatgtcaccccctcccctgagccctgcagtggctgccggtggccctcgggatcatgtccagagtccc
B D                   Gorilla  aattatgtcaccccctcccctgagccctgcagtggctgccggtggccctcgggatcatgtccagagtccc
B D                 Orangutan  cattatgtcaccccctcccctgagccctgcagtggctgccggtggccctcaggatcatgtccagagtccc
B D                    Gibbon  aattatgtcaccccctcccctgagccctgcagtggctgccggtgcccctcaggatcatgtccagagtccc
B D                    Rhesus  aattatgtcatcccctcccctgagccctgcagtggctgctcgtggccctcaggatcatgtccagagtccc
B D       Crab-eating macaque  aattatgtcatcccctcccctgagccctgcagtggctgctcgtggccctcaggatcatgtccagagtccc
B D                    Baboon  aattatgtcatcccctcccctgagccctacagtggctgctggtggccctcaggatcatgtccagagtccc
B D              Green monkey  aattatgtcaccccctcccctgagccctgcagtggctgctggtggccctcaggatcatgtccagagtctc
B D          Proboscis monkey  aattatgtcaccccctcccctgagccctgcagtggctgctggtggccctcaggatcatgtccagagtccc
B D  Golden snub-nosed monkey  aattatgtcaccccctcccctgagccctgcagtggctgctggtggccctcaggatcatgtccagagtccc
B D                  Marmoset  aattttgtgatcccctcccctgagccctgcagtggct-ctggtggccctcaggaaaatgtccagagtccc
B D                   Tarsier  aatcacattgcccttccccc--atccctcccgcggctgctggtggcccacggggtgatgt-cggagtc-c
B D                       Dog  aatcatgtcatctactcacccaaacctt-caacggccgcccttggccctcaggataatgtccccattccc
B D                     Mouse  ======================================================================
B D           Squirrel monkey  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  ======================================================================

                        Human  tgcgtggcgtgaaggcccctggagacccggcctcagccccctcccctgtctcttcctc
                        Chimp  tgcgtggcgtgaaggcccctggagacccggcctcagccccctcccctgtctcttcctc
                       Bonobo  tgcgtggcgtgaaggcccctggagacccggcctcagccccctcccctgtctcttcctc
                      Gorilla  tgcgtggcgtgaaggcccctggagacccggcctcagccccctcccctgtctcttcctc
                    Orangutan  tgcgtggcgtggaggcccccggagacccggccacagccccctcccccgtctcttcctc
                       Gibbon  tgtgtggcatggaggcccctggagacccggccccagccccctccc--gtctcttcctc
                       Rhesus  tgcgtggcgtggaggcccctggagacccagccccagccccttcccctgtctcttcctc
          Crab-eating macaque  tgcgtggcgtggaggcccctggagacccagccccagccccttcccctgtctcttcctc
                       Baboon  tgcgtggcatggaggcccctggagacccagccccagccccttcccctgtctcttcctc
                 Green monkey  tgcgtggcgaggaggcccctggagacccagccccagccccttcccctgtctcttcctc
             Proboscis monkey  tgcgtggcgtggaggcccctggagacccagccccagccccttcccctgtcttttcctc
     Golden snub-nosed monkey  tgcgtggcgtggaggcccctggagacccagccccagccccttcccctgtcttttcctc
                     Marmoset  tgcaaggcgtggaggcccctggagacccggcc-cagccccctcccctgt---------
                      Tarsier  tgcagggcacggaggcccct-cagacctggccccagccacctcccctgtctctccctg
                          Dog  tgcatggcacggaagacccctgaagactagccccggccaccagcc-tgcctcttcctt
                        Mouse  ==========================================================
              Squirrel monkey  ==========================================================
                   Tree shrew  ==========================================================
                     Bushbaby  ==========================================================
                  Mouse lemur  ==========================================================

Alignment block 5 of 231 in window, 32608302 - 32608414, 113 bps 
B D                     Human  ccctgcagatctg--cccccatctcc--ctggaggtggcctgttctcc-acgccaccctcacaggctgcc
B D                     Chimp  ccctgcagatctg--cccccatctcc--ctggaggtggcctgttctcc-acgccaccctcacaggctgcc
B D                    Bonobo  ccctgcagatctg--cccccatctcc--ctggaggtggcctgttctcc-acgccaccctcacaggctgcc
B D                   Gorilla  ccctgcagatctg--cccccatctcc--ctggaggtggcctgttctcc-acgccaccctcacaggctgcc
B D                 Orangutan  ccctgcagatctgcccccccatctcc--ctggaggtggcctgttctcc-acgccgccctcacaggctgcc
B D                    Gibbon  cgctgcagatctg--cccccatctcc--ctggaggtggcctgttctct-gcgccgctctcacaggctgcc
B D                    Rhesus  ccctgcaggtctg--cccccatctcc--ccggtggcggcctgttcccc-gcgctgccctcacccgctgcc
B D       Crab-eating macaque  ccctgcaggtctg--cccccatctcc--ccggtggcggcctgttcccc-gcgctgccctcacccgctgcc
B D                    Baboon  ccctgcaggtctg--cccccatctcc--ccggtggtggcctgttccct-gcgctgccctcacccgctgcc
B D              Green monkey  ccctgcagatctg--cccccatctcc--ccggtggcggcctgttctct-gagctgccctcacacgctgcc
B D          Proboscis monkey  ccctgcagatctg--cccgcatctcc--ccggtggcggcctgttctcc-gcgctgccctcacacgctgcc
B D  Golden snub-nosed monkey  ccctgcagatctg--cccgcatctcc--ccggtggcggcctgttctcc-gcgctgccctcacacgctgcc
B D                  Marmoset  ------ggatctg--gtc-catctcc--ccggaggcagcccgttctcc-cagatgccctcacaccccgcc
B D           Squirrel monkey  ccctgcggagctg--ctc-tgtctcc--ccggaggcggcctgttctcc-cagatgccctcacacccagcc
B D                   Tarsier  cccgacagctcct--gccccctcccccaccccgggattcatgtcctcctgcgggtcccttgcgc-ctggc
B D                       Dog  ccctgctg----g--ctctcaccacc-----------------tcttt-gtgcc-cacagacaggttctc
B D                     Mouse  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  ======================================================================

                        Human  tggcggactctcctcaca-gcactgtgcttcccggggcc------cacttgtaca
                        Chimp  tggcggactctcctcaca-gcactgtgcttcccggggcc------cacttgtaca
                       Bonobo  tggcggactctcctcaca-gcactgtgcttcccggggcc------cacttgtaca
                      Gorilla  tggcggactctcctcaca-gcactgtgcttcccggggcc------cacttgtaca
                    Orangutan  tggcggactctcctcaca-gcgccgtgcttcccggggcc------cacttgtaca
                       Gibbon  tggcagactctcctcata-gcactgtgcttcccggggcc------cacttgtaca
                       Rhesus  tggcggattctcctcaca-ggactgtgctttccagggcc------cacttgtaca
          Crab-eating macaque  tggcggattctcctcaca-gcactgtgctttccagggcc------cacttgtaca
                       Baboon  tggcggattctcctcaca-gcactgtgctttccagggcc------cacttgtaca
                 Green monkey  tggtggattctcctcaca-gcactgtgctttccagggcc------cacttgtaca
             Proboscis monkey  tggcggattctcctcaca-gcactgtgctttccagggcc------cacctgtaca
     Golden snub-nosed monkey  tggcggattctcctcaca-gcactgtgctttccagggcc------cacctgtaca
                     Marmoset  tggcgggctgtcctcctg-gtgctgggcttcccagggcc------gccttatgca
              Squirrel monkey  tggcaggctctcctcctg-gcgctgggcttcccagggtc------gccttatgca
                      Tarsier  tggctgactcccgccacaggggctgtactt-ctgagacc------ggctcaggca
                          Dog  cagccggctcctcctgta-------------ccggggccatcagacccctgtgtg
                        Mouse  =======================================================
                   Tree shrew  =======================================================
                     Bushbaby  =======================================================
                  Mouse lemur  =======================================================

Alignment block 6 of 231 in window, 32608415 - 32608604, 190 bps 
B D                     Human  ggccccatgcgagaaggacctcgggcagtgtataatcctccaagggcccacaggaacagcagtgacaact
B D                     Chimp  ggccccatgcgagaaggacctcgggccgtgtataatcctccaagggcccacaggaacagcagtgacaact
B D                    Bonobo  ggccccatgcgagaaggacctcgggccgtgtataatcctccaagggcccacaggaacagcagtgacaact
B D                   Gorilla  ggccccatgcgagaaggacctcgggccgtgtataatcctccaagggcccacaggaacagcagtgacaact
B D                 Orangutan  ggccccatgtgagaaggacttcgggccatgtataatcctccaagggcccacaggaacagcagtgacaact
B D                    Gibbon  ggccccatgcgagaaggacttcgggctgtgtataatcctccaagggcccacaggaacagcagtgacaact
B D                    Rhesus  ggccccatgcgagaaggacttcaggccatgtataatcctccaagggcccatggggacagcagtgacaact
B D       Crab-eating macaque  ggccccatgcgagaaggacttcaggccatgtataatcctccaagggcccagggggacagcagtgacaact
B D                    Baboon  ggccccatgcgagaaggacttcaggccatgtataatcctccaaggacccatggggacagcagtgacaact
B D              Green monkey  ggccccatgcgagaaggacttcaggccatgtataatcctccaagggcccatggggacagcagtgacaact
B D          Proboscis monkey  ggccccatatgagaaggactttaggccgtgtataatcctccaagggcccatggggacagcagtgacaact
B D  Golden snub-nosed monkey  ggccccatgcgagaaggactttaggccgtgtataatcctccaagggcccatggggacagcagtgacaact
B D                  Marmoset  ggctccatgtgaggagggctccaggccatgcataatcctccaagggtctacagggacagcagtgacatct
B D           Squirrel monkey  ggcttcgtgtgaggagggctccaggccatgcgtagtcctccaagggtccacagggacagcagtgacatct
B D                   Tarsier  ggccgcatgcaaggagctcttcaggcagcgcagaatcctccagcagccca-ggtgac-gaaatcagacct
B D                     Mouse  gggtccagcccaagagctcctgggtcagcatgagatcctgtaacagccctaattcacagcaaaagccatc
B D                       Dog  ggcc--------aagggctccccagcagagcacattccttcagctactcgccgtgacagcaacgccaggc
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  ======================================================================

                        Human  gtgttatgaagcacctactatgtgctgggga-caagaatgg--aac--aa----gaagacatgcttt---
                        Chimp  gtgttatgaagcacctactgtgtgctgggga-caagaatgg--aac--aa----gaagacatgcttt---
                       Bonobo  gtgttatgaagcacctactgtgtgctgggga-caagaatgg--aac--aa----gaagacatgcttt---
                      Gorilla  gtgttatgaagcacctactgtgtgctgggga-caagaatgg--aac--aa----gaagtcatgcttt---
                    Orangutan  gtgttatgaagcacctactgtgtgctgggga-caagaatgg--aac--aa----gaaaacatgcttt---
                       Gibbon  gtgttatgaagcacctactgtgtgctgtgga-caagaatgg--aac--aa----gaagacatgcttt---
                       Rhesus  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggcacgccgt---
          Crab-eating macaque  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggcacgctgt---
                       Baboon  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggcacaccgt---
                 Green monkey  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggtatgcctt---
             Proboscis monkey  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggcacgcctt---
     Golden snub-nosed monkey  gtggtatgaagcacctactgtgtgctggggaccaagaatgg--aac--aa----gaaggcacgcctt---
                     Marmoset  gtgttatgaagcaccgactgtgtgctaggcaccaagaacag--aac--aa----gaaggcaggcctt---
              Squirrel monkey  gtgttatgaagcaccaactgtgtgctaggcaccaagaacag--aac--aa----gaaggcacgcctt---
                      Tarsier  ctg---cagagcacctgctctgtgctgggtgccaagaatgagcggt--ga----gaagacaccctcg---
                        Mouse  ttag--------actctctatgtgcagggtgccaagagtgg--agctaag----gaagaaacgtgtg---
                          Dog  tt-ccgttaagcacctactgtgtgcgaggtaccaagaacag--agc--tatggtgaagacatgcctcctc
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  ----gccctcacccctggagggcagcttccagccagggaggcaaat-acctcctc------cccagactc
                        Chimp  ----gccctcacccctggagggcagcttccagccagggaggcaaat-acctcctc------cccagaccc
                       Bonobo  ----gccctcacccctggagggcagcttccagccagggaggcaaat-acctcctc------cccagaccc
                      Gorilla  ----gccctcacccctggagggcagcttccagccagggaggcaaat-acctcctc------cccagaccc
                    Orangutan  ----gccctcatccctgga-ggcagcttccagccagggaggcaaat-acctcctc------cccagaccc
                       Gibbon  ----gccctcacccctgga-ggcagcttccagtcagggaggcaaat-acctcctc------cccagaccc
                       Rhesus  ----gccctcacccctgga-ggcagcttccagctagggaggcaaat-acgtcctc------cccagaccc
          Crab-eating macaque  ----gccctcacccctgga-ggcagcttccagctagggaggcaaat-acgtcctc------cccagaccc
                       Baboon  ----gccctcacccctgga-ggcagcttccagctagggaggcaaat-acgtcctc------cccagaccc
                 Green monkey  ----gccctcacccctgga-ggcagcttccagctagggaggcaaat-acgtcctc------cccagaccc
             Proboscis monkey  ----gccctcacccctgga-ggcagcttccagctagagaggcaaat-acgtcctc------cccagaccc
     Golden snub-nosed monkey  ----gccctcacccctgga-ggcagcttccagctagggaggcaaat-acgtcctc------cccagaccc
                     Marmoset  ----gcccttgtccctgga-ggcagcttccagccagggaggcaaat-acctcctc------tggg-----
              Squirrel monkey  ----gccctcatccctgga-ggcagcttccagccagcgaggcaaat-acctcctc------tggg-----
                      Tarsier  ----gccttg---cctgta---------------cgagaggcaagcaaccttctcggggttccgacatcc
                        Mouse  ----accttcttccc---a-ggcacactggaaggagggagg-gaat-tcctcc-----------------
                          Dog  aggggccttcgcccc-----cacacctttc----------------------------------------
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  ctt
                        Chimp  ctt
                       Bonobo  ctt
                      Gorilla  ctt
                    Orangutan  ctt
                       Gibbon  ctt
                       Rhesus  ctc
          Crab-eating macaque  ctc
                       Baboon  ctc
                 Green monkey  ctc
             Proboscis monkey  ctc
     Golden snub-nosed monkey  ctc
                     Marmoset  cgt
              Squirrel monkey  ctt
                      Tarsier  gcc
                        Mouse  ---
                          Dog  ---
                   Tree shrew  ===
                     Bushbaby  ===
                  Mouse lemur  ===

Alignment block 7 of 231 in window, 32608605 - 32609159, 555 bps 
B D                     Human  ccacagatccccaaactctgcctct-ctc-cttc-agatccctgctcag--atgtcaccagc-tctgtgc
B D                     Chimp  ccacagatccccacactctgcctct-ctc-cttc-agatccctgctcag--atgtcaccagc-tctgtgc
B D                    Bonobo  ccacagatccccacactctgcctct-ctc-cttc-agatccctgctcag--atgtcaccagc-tctgtgc
B D                   Gorilla  ccacagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctgtgc
B D                 Orangutan  ccacagatctccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctgtgc
B D                    Gibbon  ccacagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctgtgc
B D                    Rhesus  ccatagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctctgt
B D       Crab-eating macaque  ccatagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctctgt
B D                    Baboon  ccatagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctgtgt
B D              Green monkey  ccatagatccccaaactctgcctct-ctc-cttc-agctccctgctcag--atgtcaccagc-tctgtgt
B D          Proboscis monkey  ccatagatccccaaattctgcctct-ttc-cttcaagctccctgctcag--atgtcaccagc-tctgtgt
B D  Golden snub-nosed monkey  ccatagatccccaaactctgcctct-ttc-cttc-agctccctgctcag--atgtcaccagc-tctgtgt
B D                  Marmoset  ccacagatccccaaactccgcctct-ctc-cttc-agctcgctgctcac--atgtcaccggc-tctgtgc
B D           Squirrel monkey  ccacagagccccacactccgc--ct-ctc-cttc-agctccctgctcac--atgtcaccggt-tctgtgc
B D                   Tarsier  ttctgggaccccacactccacctcc-tgctcttc-aggtgcctgctcag--atgtggctgccttttgtgc
B D                  Bushbaby  ccataaatccccaaactctgcctctgctt-cttg-agatctctgttcaa--acggctctgtc-tctgtgc
B D                     Mouse  ---------------------------------c-aggtttctgctctgctatggttctgcc-tcactg-
B D                       Dog  ccacagat-tgcagaccctgcctct---c-cttc-aggtc-ctgctcct--at--------c-tctgtga
B D                Tree shrew  ======================================================================
B D               Mouse lemur  ======================================================================

                        Human  agcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgc------t
                        Chimp  ggcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgc------t
                       Bonobo  ggcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgc------t
                      Gorilla  ggcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgc------t
                    Orangutan  agcctccctgctaccaagtctaaaattgccatagtccccccagttcctcacccctctccctgc------t
                       Gibbon  ggcctccctgccaccaagtctaaaattgccatagtccccccagttcctcacccctctccctgc------t
                       Rhesus  ggcctcctcgccaccaagtctaaaattgccatagtccccccagctcctcacccctctccctgc------t
          Crab-eating macaque  ggcctcctcgccaccaagtctaaaattgccatagtccccccagctcctcacccctctccctgc------t
                       Baboon  ggcctccttgccaccaagtctaaaattgccatagtccccccagctcctcacccctctccctgc------t
                 Green monkey  ggcctcttcgccaccaagtctaaaattgccatagtccccccagctcctcatccctctccctgc------t
             Proboscis monkey  ggcctcctcaccatcaggtctaaaattgccatagtccccccagctcctcacccctctgcctgc------t
     Golden snub-nosed monkey  ggcctcctcaccatcaggtctaaaattgccatagtccccccagctcctcacccctctgcctgc------t
                     Marmoset  ggcctccccaccaccaggtctaaaatgcccacag-ccccctagctccccatccctctcactgc-------
              Squirrel monkey  agcctgcccaccaccaggtctaaaatgcccacag--cccctagttccccacccctctcgctgc-------
                      Tarsier  agccacccagccaccaagtctaaaattgccaccgt-cccccgcttccccaccctcctcccggc------t
                     Bushbaby  caccctccc-cagccaaat----actccccaaactcaccac-------cacccctctccctgctttcttt
                        Mouse  ---cccctggctaccag----------------------------ccccacccctct--ctgt-------
                          Dog  gtcccccg---------------------------cccccgaattcccca-ccctctcaccac------t
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  ttctt----tgtc--tgtctcatccatgagga-tgtgccctctgggaagggcaggcaggagctggctatt
                        Chimp  ttctt----tgtc--tgtctcatccatgagga-tgtgccctctgggaagggcaggcaggagctggctatt
                       Bonobo  ttctt----tgtc--tgtctcatccatgagga-tgtgccctctgggaagggcaggcaggagctggctatt
                      Gorilla  ttctt----tgtc--tgtctcatccatgagga-tgtgccctctgggaagggcaggcaggagctggctatt
                    Orangutan  ttctt----tgtc--tgtctcatccatgagga-tgtgccctctgggaagggcaggcaggagctggctatt
                       Gibbon  ttatt----tgtc--tgtcgcatccacgagga-tgtaccctctgggaagggcagg-aggagctggctatt
                       Rhesus  ttctt----tgtg--tgtctcatccacaagga-tgtgccttctgggaagggcagacaggagctgtctatt
          Crab-eating macaque  ttctt----tgtg--tgtctcatccacaagga-tgtgccttctgggaagggcagacaggagctgtctatt
                       Baboon  ttctt----tgtg--tgtctcatccacaagga-tgtgccttctgggaagggcagacaggagccgtctatt
                 Green monkey  ttctt----tgtg--tgtctcatccacaagga-tgtgccctctgggaaggacagacaggagctgtctatt
             Proboscis monkey  ttctt----tgtg--tgtctcatccacgagga-tgtgccctctgggaagggcagacaggagctgtctatt
     Golden snub-nosed monkey  ttctt----tgtg--tgtctcatccacgagga-tgtgccctctgggaagggcagacaggagctgtctatt
                     Marmoset  ---gg----tgtc--tatctcatccatgagga-catgccctctgggaagggcaggcaggggctggcgatt
              Squirrel monkey  ---tt----tgtc--tatctcatccatgagga-catgccctctgggaagggcaggcagaggctggtgatt
                      Tarsier  ttcttgtcgtgtc--tgtctcacccaccagga-tgcgccctctgggaagggcaggcaggggctgactgtt
                     Bushbaby  ttctt----tatc--tgtctcccccactagaa-tgtgccctctgggaaag-taggcaggggttta-----
                        Mouse  ---ct----tgtc--tgtcccctccacaagca-cttgccctccaggaagggcaggcaagggctgtttgtt
                          Dog  ttctt----tgtctttgtgtcacctgctagaattgtaccctctgggaagggtaggcagtgattgcc----
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  ctgttccttgccctgtccccagcaccgaggacagtgccaggcatggaggaaataattgctg-aataaaga
                        Chimp  ctgttccttgccctgtccccagcaccgaggacagtgccaggcatggaggaaatcattgctg-aataaaga
                       Bonobo  ctgttccttgccctgtccccagcaccgaggacagtgccaggcatggaggaaatcattgctg-aataaaga
                      Gorilla  ctgttccttgccctgtccccggcaccgaggacagtgccaggcatggaggaaataattgctg-aatgaaga
                    Orangutan  ctgttccttgccctgtccccagcaccgaggacagtgccaggcatggaggaaataattgctg-aataaaga
                       Gibbon  ctgttccttgccctgtccccagcaccgaggacagtgccaggcacggaggaaataattgctg-aataaaga
                       Rhesus  ctgttccttgccctgtccccagcaccgaggacagtgccaggcacggaggaaataattgctg-aataaaga
          Crab-eating macaque  ctgttccttgccctgtccccagcaccgaggacagtgccaggcacggaggaaataattgctg-aataaaga
                       Baboon  ctgttccttgccctgtccccagcaccgaggacagtgccaggcacggaggaaataattgctg-aataaaga
                 Green monkey  ctgttccttgccctgtccccagcactgagaacagtgccaggcatggaggaaataattgctg-aataaaga
             Proboscis monkey  ctgttccttaccctgtccccagcaccgaggacagtgccagacacggaggaaatcattgctg-aataaaga
     Golden snub-nosed monkey  ctgttccttaccctgtccccagcaccgaggacagtgccagacacggaggaaatcattgctg-aataaaga
                     Marmoset  ctgctccttgctctgtccccagtacagaggacagtgccaggcacggaggaaataatcgttg-aatgaaga
              Squirrel monkey  ctgctccttgctctgtccccaggactgaggacagtgccaggcatggaggaaatcatcattg-aatgaaga
                      Tarsier  cttttccctgcc--gtccccagcaccgaggacagtgccaggcacagcagaaatatttgttgaaacggagg
                     Bushbaby  ----------------ccccagcaccgaggacagtgccaggcacagaggacatatgtgctg-aataaagg
                        Mouse  ctat--cctgttctgtccccagcaccgaggacagtgctaggca--gaggaaatcctggtta-aagagagg
                          Dog  -----ctctgctctctccccagcacctaggacagtgccaggcacagaggaaatatgcgttg-aatgaagg
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  aataaaatcg--acattctatgag-acataaagcacagttcagacacatgga-gtga-ggggtggttcca
                        Chimp  aataaaatcg--acattctatgag-acataaagcacagttcagacacatgga-gtga-ggggtggttcca
                       Bonobo  aataaaatcg--acattctatgag-acataaagcacagttcagacacatgga-gtga-ggggtggttcca
                      Gorilla  aataaaatcg--acattctatgag-acataaagcacagttcagacacatgga-gtga-ggggtggttcca
                    Orangutan  aataaaatct--acattctatgag-acataaagcacagctcagatacatgga-gtga-ggggtggctcca
                       Gibbon  aataaaatct--acattctatgag-acataaagcacagctcagacacatgga-gtga-ggggtggctcca
                       Rhesus  aataaaatttgcacattctatgaatacataaagtacagctcagacacatggt-gtga-ggggtggctcca
          Crab-eating macaque  aataaaatttgtacattctatgaatacataaagtacagctcagacacatggt-gtga-ggggtggctcca
                       Baboon  aataaaatttgtacattctgtgagtacataaagtacagctcagacacatggt-gtga-ggggtggctcca
                 Green monkey  aataaaatctgtacattctatgagtacataaagtacagctcagacacatgggagtga-ggggtggctcca
             Proboscis monkey  aataaaatctgtacattctataagtacataaagcacagctcagacacatgga-gtga-ggggtggctcca
     Golden snub-nosed monkey  aataaaatctgtacattctatgagtacataaagcacagctcagacacatgga-gtga-ggggtggctcca
                     Marmoset  aat--aatctgtaaattctacgagtacacgaagcgtggctcagacacatgga-gtga--gggtggctcca
              Squirrel monkey  aataaaatctgtaaattctaccagtacatgaagcatggctcagacacatgga-gtga--gggtggctcca
                      Tarsier  agcgaaatccataagtact--tagtacataaagcacggtacagacatacagt-gtga-tgggt-gttctt
                     Bushbaby  agt---------aagtactgtgaatacac-aagcatgggaaggacgtgtgga-gtga-tggg--------
                        Mouse  agtgaagtcctcgccctc-------acaggagaga------agacacaacaa-acag-caggtacttgag
                          Dog  agtacaatctagaaggagtaggagcacatcaagcac--cacagggatacaga-gtaatggggtggctttg
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  ttctgactgcggtgatcccggtggtctctctgagtaggtggcattgagctgagacccagtgatgtgaagg
                        Chimp  ttctgactgcggtgatcccggtggtctctctgagtaggtggcactgagctgagacccagtgatgtgaagg
                       Bonobo  ttctgactgcggtgatcccggtggtctctctgagtaggtggcactgagctgagacccagtgatgtgaagg
                      Gorilla  ttctgactgcggtgatcccggtggtctctctgagtaggtggcattgagctgagacccagtgatgtgaagg
                    Orangutan  ttctgactgcagtgatcccggtggtctctctgagtaggtggcactgagctgagacccagtgatgtgaaag
                       Gibbon  ttctgactgcggtgatcccggtggtctctctgagtaggtggcattgagctgaggcccagtgatgtgaagg
                       Rhesus  ttctgactgcggtgatccgggtggtctctctgaggaggtggcactgagctgagaaccagtgatgtgaagg
          Crab-eating macaque  ttctgactgcggtgatccgggtggtctctctgaggaggtggcactgagctgagacccagtgatgtgaagg
                       Baboon  ttctgactgcagtgatccgggtggtctctctgaggaggtggcactgagctgagacccagtgatgtgaagg
                 Green monkey  ttttgactgcggtgatctgggtggtctctctgaggaggtggcactgagctgagacccagtgatgtgaagg
             Proboscis monkey  ttttgactgcggtgatccgggtggtctctctgaggaggtggcactgagctgagacccagtgatgtgaagg
     Golden snub-nosed monkey  ttttgactgcggtgatccgggtggtctctctgaggaggtggcactgagctgagacccagtgatgtgaagg
                     Marmoset  -tctgactgcggcggtcccaggggtctctctgaggaggtggcattgagctgaggctcagtgatgtgaagg
              Squirrel monkey  -tctgactgcggtggtcccgggggtctctctgaggagctggtattgagctgaggctcagtgatgtgaagg
                      Tarsier  tttttactgtgacggtccaggagg--tctctgaggaggtggcactgagcagacacccactgatgtgaagg
                     Bushbaby  -----------gtagtctgggaggtctctctgaagaggtagcactgagcggagaccccacgatgtaaagg
                        Mouse  tgttaagcagagtgatcacag-actctccccaaggaagcggcat--ggcagaggcccagcga--------
                          Dog  ttttggctggagtggtcccggaggcctctttgaggaggcagcaa-gagcagagactcag-gatatgaa-g
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  actgagcgtgtgtggaggaagagtattccaggtggaggaagcagtaaatg---gcaaaggccccgagaca
                        Chimp  actgagtgtgtgtggaggaagagtattccaggtggaggaagcagtaaatg---gcaaaggccccgagaca
                       Bonobo  actgagtgtgtgtggaggaagagtattccaggtggaggaagcagtaaatg---gcaaaggccccgagaca
                      Gorilla  actgagcgtgtgtggaggaagagtattccaggtggaggaagcagtaaatg---gcaaaggccccgagaca
                    Orangutan  actgagcgtgtgtggaggaagaatattccaggtggaggaagcagtaaatg---gcaaaggccccgagaca
                       Gibbon  actaagcgtgtgtggaggaagaatattgcaggtggaggaagcagtaaacg---gcaaaggccctgagaca
                       Rhesus  actaagcgtatgtggaggaagaatattccaggtggaggaagcagtaaaca---gcaaaggctgtgagaca
          Crab-eating macaque  actaagcgtgtgtggaggaagaatattccaggtggaggaagcagtaaaca---gcaaaggctgtgagaca
                       Baboon  actaagcgtgtgtggaggaagaatattccaggtggaggaagcagtaaaca---gcaaaggctgtgagaca
                 Green monkey  actaagcacgcgtggaggaagaatattccaggtggaggaagcagtaaaca---gcaaaggctgcgagaca
             Proboscis monkey  actaagcgtgtgtggaggaagaatattgcaggtggaggaagcagtaaaca---gcaaaggctgcgagaca
     Golden snub-nosed monkey  actaagcgtgtgtggaggaagaatattgcaggtggaggaagcagtaaaca---gcaaaggctgcgagaca
                     Marmoset  gctgagc-----tggtggaatcatgttccaggtggaggaagcagtaaatg---gcaaaggtcccaagacg
              Squirrel monkey  gctgagc-----tcgtggaataatgttccaggtggaggaagcagtaaatg---tcaaaggtcccaggacg
                      Tarsier  actgag--tgtgtggagagagaatgttccaggcggaagaagcagcacatg---gcagaggccccgagaca
                     Bushbaby  acgaagc--atgttgaagaagattgctctgggtggacgaagcgccaaatt---gcaaaagccctgagaca
                        Mouse  ------cttgttcaagagaggaatgttcta-gtacaacaggcaataaataggtgcaaagaccctgccgcc
                          Dog  actgagc-----ctgaggaagaatgtttcaggtggagaaagcagtgaatt---gcaaaggcccccagaca
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  gggct-gagctctgtgt------------gtaagtgaggccagagttgagtgaaccaggggagagcgggg
                        Chimp  gggct-gagctctgtgt------------gtaagtgaggccagagttgagtgaaccaggggagagcgggg
                       Bonobo  gggct-gagctctgtgt------------gtaagtgaggccagagttgagtgaaccaggggagagcgggg
                      Gorilla  gggct-gagctctgtgt------------gtaagtgaggccagagttgagtgaaccaggggagagcgggg
                    Orangutan  gggct-gagctctgtgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggagagcgggg
                       Gibbon  gggct-gagctctgtgtgttctgaaaacagtaagtgaggccagagtagagtgaaccaggggagagcgggg
                       Rhesus  gggct-gagctctgtgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggagagcgggg
          Crab-eating macaque  gggct-gagctctgtgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggagagcgggg
                       Baboon  gggct-gagctgtgtgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggagagcgggg
                 Green monkey  gggct-gagctctatgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggaaagcgggg
             Proboscis monkey  gggctggagctctgtgtgttccgaaaacagtaagtgaggccagagttgagtgaaccaggggagagcgggg
     Golden snub-nosed monkey  gggct-gagctctgtgtgttccgaaaacagtaagtgaggccagaattgagtgaaccaggggagagcgggg
                     Marmoset  gggct-gagcttggggtgttctcaaaacagcaagcgaggtcagaggtgagtgaaccggaggagagcgggg
              Squirrel monkey  gggct-gagctcgaggtgttctgaaaacagcaagtgaggtccgaggtgagtgaatcgggggagagagggg
                      Tarsier  gagcg-gagccgagggt--tctgaaacctgcaagtgaggcc-----tgagtgaaccagggg-gagctgtg
                     Bushbaby  ggact-gagcttggtgt--tcagaagccaccaagcgaggccagagttgagtgaaccagagaagaatggag
                        Mouse  tggcc-catcctggatgaagcagaaagcagggagagtggtgggaagcgagccactccatggaggacagag
                          Dog  -ggct-gagctccaggtgtcaccaaga-agcaggtgaagccagagctgagtgagcca---gagagtgggc
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================

                        Human  tgggtggg--------gctgagctagggagaagttttcctaaac
                        Chimp  tgggtggg--------gctgagctagggagaagttttcctaagc
                       Bonobo  tgggtggg--------gctgagctagggagaagttttcctaagc
                      Gorilla  tgggtggg--------gctgagctagggagaagttttcctaagc
                    Orangutan  taggtggg--------gctgagctagggagaagttttactaagc
                       Gibbon  tggatggg--------gctgagctagggagaagttttactaagc
                       Rhesus  tgggtggg--------actgagctagggagaagttttactaagc
          Crab-eating macaque  tgggtggg--------actgagctagggagaagttttactaagc
                       Baboon  tgggtggg--------actgagctagggagaagttttactaagc
                 Green monkey  tgggtggg--------actgagctagggagaagttttactaagc
             Proboscis monkey  tgggtggg--------actgagctagggagaagttttactaagc
     Golden snub-nosed monkey  tgggtggg--------actgagctagggagaagttttactaagc
                     Marmoset  tgggtggg--------actgggctggggggaagtttcactaagc
              Squirrel monkey  tgggtggg--------gctgggctggggagaagcttcactaagc
                      Tarsier  -----ggg--------accaggctcgggagaggttgtactaagc
                     Bushbaby  tgtgtggg---------ccagcatggggagaagttttgctaagc
                        Mouse  tgagcaggtgagcagagtcaaggtggaaagaag----acagagc
                          Dog  tgggcagg-----------ggcccgaggagaagccttcctacac
                   Tree shrew  ============================================
                  Mouse lemur  ============================================

Inserts between block 7 and 8 in window
B D                    Mouse 9bp

Alignment block 8 of 231 in window, 32609160 - 32609286, 127 bps 
B D                     Human  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                     Chimp  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                    Bonobo  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                   Gorilla  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                 Orangutan  cctttcccaggagagtaaactgaggctcggggaa------------gctaagtccaaggccaccaaacaa
B D                    Rhesus  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D       Crab-eating macaque  cctttcccaggagagtaaactgaggttcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                    Baboon  cctttcccaggagagtaaactgaggcttggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D              Green monkey  cctttcccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D          Proboscis monkey  cctttcccaggagagtaaactgaggcccggggaagctaagt-----gctaagtccaagaccacaaaacaa
B D  Golden snub-nosed monkey  cctttcccaggagagtaaactgaggcccggggaagctaagt-----gctaagtccaagaccacaaaacaa
B D                  Marmoset  cctttcccaggacagtaaactgaggcttggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D           Squirrel monkey  ccttttccaggagagtaaactgaggctcggggaagctaagt-----gctaagtccaaggccacaaaacaa
B D                   Tarsier  ccttttgtaggagggcaaactgcggtccagggagtctacat-----gctgagctgaatgccacaaaacaa
B D                  Bushbaby  -cctttctaggagggtaaactgaggctt-tgaaagctaagtgctaagctaagtccagggccagaaagcaa
B D                     Mouse  cccccccaccaagagtaaactgaggctaacggaagctaagt-----ac-----------ccataaaacaa
B D                       Dog  ccttttccaggaggctcagcggaggctcagggaagctaagt-----gacttatccaaggccacaacacaa
B D                Tree shrew  ======================================================================
B D               Mouse lemur  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gg-agaggcaga-aacagg-ctagacctgggtctgctgg------------------------------t
                        Chimp  gg-agaggcaga-aacagg-ctagacctgggtctgctgg------------------------------t
                       Bonobo  gg-agaggcaga-aacagg-ctagacctgggtctgctgg------------------------------t
                      Gorilla  gg-agaggcaga-aacagg-ctagacctgggtctgctgg------------------------------t
                    Orangutan  gg-agcagcaga-agcagg-ctagacctgggtctgctgg------------------------------t
                       Rhesus  gg-agtggcaga-ggcagg-ctagacctgggtctactgg------------------------------c
          Crab-eating macaque  gg-agtggcaga-ggcagg-ctagacctgggtctactgg------------------------------c
                       Baboon  gg-agtggcaga-ggcagg-ctagacctgggtctgctgg------------------------------c
                 Green monkey  gg-agtggcaga-ggcagg-ctagacctgggtctgctgg------------------------------c
             Proboscis monkey  gg-agtggcaga-ggcagg-ctagacctgggtctgctgg------------------------------t
     Golden snub-nosed monkey  ag-agtggcaga-ggcagg-ctagacctgggtctgctgg------------------------------t
                     Marmoset  gg-agtggcaga-ggcagg-ctagacctgtgcccgctgg------------------------------c
              Squirrel monkey  gg-agtggcaga-ggcagg-ctagacctgtgcctgctgg------------------------------t
                      Tarsier  ggaagtggcaga-ggcaggactagacctggacctgctgggaaatggggccagagctcaggactccgtcct
                     Bushbaby  gaaagcaacaga-gataggactagaccta-gcctgttgg------------------------------g
                        Mouse  ggaagtgtcagatgtcggg-tcaaacctggagccagaga------------------------------c
                          Dog  ggaagtgccaga-ggtggcactggattcaggcctgctgg------------------------------g
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ctg-----------------------------------aggggccctctctg--t-gcaccct
                        Chimp  ctg-----------------------------------aggggccctctctg--t-gcaccct
                       Bonobo  ctg-----------------------------------aggggccctctctg--t-gcaccct
                      Gorilla  ctg-----------------------------------aggggccctctctg--t-gcaccct
                    Orangutan  ctg-----------------------------------aggggccctctctg--t-gtaccct
                       Rhesus  ctg-----------------------------------aggggccctctctg--t-gcaccct
          Crab-eating macaque  ctg-----------------------------------aggggccctctctg--t-gcaccct
                       Baboon  ctg-----------------------------------aggggccctctctg--t-gcaccct
                 Green monkey  ctg-----------------------------------aggggccctctctg--t-gcaccct
             Proboscis monkey  ctg-----------------------------------aggggccctctctg--t-gcaccct
     Golden snub-nosed monkey  ctg-----------------------------------aggggccctctctg--t-gcaccct
                     Marmoset  ctgtggggccagagaccagggat---------------gggggccctgtctg--t-gcgccct
              Squirrel monkey  ctgtggggcccgagaccaggggt---------------gggggccctgtctg--t-gtgccct
                      Tarsier  cgg-----------------------------------gggagcctcccctggct-gaacgcc
                     Bushbaby  atgtggggccagaaactcagggtcacccctttccaagagaggcccctccctg--tcatactct
                        Mouse  tca-----------------------------------agg---cttctctc--t-gcag---
                          Dog  atgtggggccccctccccaggt----------------ggggctcctctcgg--t-cactcct
                   Tree shrew  ===============================================================
                  Mouse lemur  ===============================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 8 and 9 in window
B D      Crab-eating macaque 10bp

Alignment block 9 of 231 in window, 32609287 - 32609512, 226 bps 
B D                     Human  gggactcagccacg-ctctacttattaatagctaagccaggtggggccccg-ctgggtcaggagcc-cca
B D                     Chimp  gggactcagccacg-ctctacttattaatagctaacccaggtggggccccg-ctgggtcaggagcc-cca
B D                    Bonobo  gggactcagccacg-ctctacttattaatagctaacccagatggggccccg-ctgggtcaggagcc-cca
B D                   Gorilla  gggactcagccacg-ctctacttattaatagctaacccaggtggggccccg-ctgggtcaggagcc-cca
B D                 Orangutan  gggactcacccacg-ctctactcattaatagctaacccatgtggggccccacctgggtcaggagcc-cca
B D                    Rhesus  ggagctcacccatg-ctctactcattaatagctaacccaggtggggccccg-ctgcgtcaggagcc-cca
B D                    Baboon  ggagctcacccatg-ctctactcattaatagctaacccaggtggggccccg-ctgcgtcaggagcc-cca
B D              Green monkey  ggagctcacccatg-ctctactcattaatagctaacccaggtggggccccg-ctgggtcaggagcc-cca
B D          Proboscis monkey  ggagctcacccatg-ctctactcattaatagctaaccgaggtggggccccg-cggggtcaggagcc-cca
B D  Golden snub-nosed monkey  ggagctcacccatg-ctctactcattaatagctaaccgaggtggggccccg-ctgggtcaggagcc-cca
B D                  Marmoset  gggtctcacccacg-ctgtgctcattaatagctaacccaggtggggccccg-ctgggtcaggaacc-ccc
B D           Squirrel monkey  gggtctcacccaca-ctgtgctcattaatagctaacccaggtggggccctg-ccgggtcaggaacc-ccc
B D                   Tarsier  ggggctc--ccgtg-ctctgctcattaatggctaaccaaggtggggccctg-ctgggtcaggagcctcca
B D                  Bushbaby  ggggctcacccatg-ctctgctcattaatagctaacccaggtggggccctg-ctggatcaggagcctcca
B D                     Mouse  ggggc---cccatgactctgctcattaatagctaaccagggtggggccctg-ctgag----------cta
B D                       Dog  ggggctcacctgtg-ctctgctcattaatagctaacccaggtggggccctg-ttgggtcaggagccaaga
B D                Tree shrew  ======================================================================
B D               Mouse lemur  ======================================================================
B D       Crab-eating macaque  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ggtttaggctcagcccagtgacctccagggcaaagcccagt---gagtgagccca-tgaat--ggggccg
                        Chimp  ggtttaggctgagcccagtgacctccggggcaaagcccagt---gagtgagccca-tgagt--ggggccg
                       Bonobo  ggtttaggctgagcccagtgacctccggggcaaagcccagt---gagtgagccca-tgagt--ggggccg
                      Gorilla  ggtttaggctcagcccagtgacctccggggcaaagcccagt---gagtgagccca-tgagt--ggggccg
                    Orangutan  ggtttaggctcagcccagtgacctccggggcaaagcccagt---gagtgagcccagtgagt--ggggccg
                       Rhesus  ggtataggctcagccctgtggcctctggggcaaagcctagt---gagtgagccag-tgagt--ggggcca
                       Baboon  ggtataggctcagccctgtggcctctggggcaaagcctagt---gagtgagccag-tgagt--ggggcca
                 Green monkey  ggtataggctcagccctgtggcctctggggcaaagcctagt---aagtgagccag-tgagt--ggggcca
             Proboscis monkey  ggtataggctcagccctgtggcctctggggcaaagcctagt---gagtgagccag-tgagt--ggggcca
     Golden snub-nosed monkey  ggtataggctcagccctgtggcctctggggcaaagcctagt---gagtgagccag-tgagt--ggggcca
                     Marmoset  ggtataggctcagcccagtggcttccggggcaaagcccagt---gagtgagtcag-tgaat--ggggcca
              Squirrel monkey  aatataggctcagcccagtggcttccggggcaaagcccagt---gagtgagtcag-tgaat--ggggcca
                      Tarsier  agtagtggctcagcttggcagcctccagggcaaagcccggg---gagggagcgag-ggagccaggggcca
                     Bushbaby  ggtattggctcagccggctggcctctggggcaaagcccaga---gagtgagtgag-tgaggcagaggcca
                        Mouse  agaaggggctgagccctg-aacttttggggccaagcccaataacaagtgagggga-tgacc--tcctcct
                          Dog  ggtgttggctcaacccagcagcctccggggccaagctcaat---gagtgagcaac-caaacaaggggccc
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================
          Crab-eating macaque  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gctg-gggaacaactggaaccctg-----gtctc-------------------cctagagctgggccatt
                        Chimp  gctg-gggaacaactggagccctg-----gtctc-------------------cctagagctgggccatt
                       Bonobo  gctg-gggaacaactggagccctg-----gtctc-------------------cctagagctgggccatt
                      Gorilla  gctg-gggaacaactggagccctg-----gtctc-------------------cctagagctgggccatc
                    Orangutan  gctg-gggaacaactggagccctg-----gtctc-------------------cctagagctgggccatc
                       Rhesus  gctg-gggaacagctgaagccctg-----gtctccctagagacctagagatggcctagagctgggccatc
                       Baboon  gctg-gggaacagctgaagccct------gtctc-------------------cctagagctgggccatc
                 Green monkey  gctg-gggaacagctgaagccctg-----gtctc-------------------cctagagctgggccatc
             Proboscis monkey  gctg-gggaacagctgaagccctg-----gtctc-------------------cctagagctgggccatc
     Golden snub-nosed monkey  gctg-gggaacagctgaagccctg-----gtctc-------------------cctagagctgggccatc
                     Marmoset  gcta-gggcacagctggagccctg-----gtccc-------------------cctagagctgggccatc
              Squirrel monkey  gctg-gggtgcagctggagccctg-----gtccc-------------------cctagagctgggccatc
                      Tarsier  gct--gggagcagctggggccatt-----gtccc-------------------ccaggag-tatgctgtc
                     Bushbaby  gctg-gggagcagctggagccatgtccctgcccc-------------------cctggagctgggccatc
                        Mouse  cttg-catgatacc-----atctt-----gtc-c-------------------ccttgagcagggccatc
                          Dog  actgtgggggcagctggagccatt-----gtccc-------------------c-------tgccccat-
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================
          Crab-eating macaque  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ggcatctgggggaagcccgatttgctggggtcggggctgactggctgggc
                        Chimp  ggcatctgggggaagcccgatttgctggggtcggggctgactggctgggc
                       Bonobo  ggcatctgggggaagcccgatttgctggggtcggggctgactggctgggc
                      Gorilla  ggcatctgggggaagcccgatttgctggggtcggggctgaccggctgggc
                    Orangutan  agcatctgggggaagcccgatttgctggggtcggggctgactggctgggc
                       Rhesus  agcatctgggggaagccggatttgctggggtc-gggctgacaggctgggc
                       Baboon  agtatctaggggaagccggatttgctggggtc-gggctgacaggctgggc
                 Green monkey  agcatcggggggaagccagatttgctggggtc-aggctgacaggctgggc
             Proboscis monkey  agcatctgggggaagctggatttgctggggtc-gggctgacaggctgggc
     Golden snub-nosed monkey  agcatctgggggaagccggatttgctggggtc-gggctgacaggctgggc
                     Marmoset  agcatcaggacaaggcctcatttgctggggtctgggctgactggctgggc
              Squirrel monkey  agcatcagggcaaggcctcatttgctggagtccgggctgactggctgggt
                      Tarsier  actgttcgggagaggtcc-agttgctgga-tcggggctgatgggt--ggc
                     Bushbaby  acggtttagggaaggccggatttgcta------ggaccaactggccgggc
                        Mouse  gctgtcaggtgaagatcgattttatagtcatacagactgccagga-----
                          Dog  --------ggagaggcccaacttgctggagtcgagggtgactggctggga
                   Tree shrew  ==================================================
                  Mouse lemur  ==================================================
          Crab-eating macaque  ==================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 10 of 231 in window, 32609513 - 32609687, 175 bps 
B D                     Human  -------cattacccgccgggggcctagagcccacggggaa--gttgggccaggttgcccctgct-agaa
B D                     Chimp  -------cattacccgccgggggcctagagcccacggggaa--gttgggccaggttgcccctgct-agaa
B D                    Bonobo  -------cattacccgccgggggcctagagcccacggggaa--gttgggccaggttgcccctgct-agaa
B D                   Gorilla  -------cattacccaccgggggcctagagcccaaggggaa--gttgggccaggttgcccctgct-agaa
B D                 Orangutan  -------cattacccgccagggtcctagagcccaaggggaa--gttgggccaggttgcccctgct-agaa
B D                    Gibbon  -------cattacccaccaggggcctagagcccaaggggaa--gttgggccaggttg-ccctgct-agaa
B D                    Rhesus  -------cattacccgctgggggcctagagcccacggggaa--gttgggccaggttgcccctgct-agaa
B D                    Baboon  -------cattacccgctgggggcctagagcccacagggaa--gttgggccaggttgcccctgct-agaa
B D              Green monkey  -------cattacccgctgggggcctagagcccacggggaa--gttgggccaggttgcccctgct-agaa
B D          Proboscis monkey  -------aattacccgctgggggcctagagcccacggggaa--gttggaccaggttgcccctgct-agaa
B D  Golden snub-nosed monkey  -------cattacccgctgggggcctagagcccacggggaa--gttggaccaggttgcccctgct-agaa
B D                  Marmoset  -------cattacctgccaggggcctagagcccacggggaa--gttgg-ccaggttgcccctgcg-agaa
B D           Squirrel monkey  -------cattacctgccaggggcctagagcccacggggaa--gttgg-ccaggttgcccctgtg-agaa
B D                   Tarsier  -------tgccaccagccaagggcctgaacaccaca-ggat--gacggagtgggttgccct---------
B D                  Bushbaby  -------catccccagccaagggcctagaggccacaaagac--atccgatcaggtcacccccactcagaa
B D                     Mouse  -------catcaccagtcaaggagacgaagactaacggtagttgttgg--ccagttataccactt-agaa
B D                       Dog  caggagacatca-cagccagga--cttgagactgca--gaa--gtcagaccaggtggccccagctcagaa
B D                Tree shrew  ======================================================================
B D               Mouse lemur  ======================================================================
B D       Crab-eating macaque  ======================================================================

                        Human  ccttcccagagtctagagcaggtggccgtgatgccctgctc-tctgcgg------ctgggactccaacta
                        Chimp  ccttcccagagtctagagcaggtggccgtgatgccctgccc-tctgcgg------ctgggactccaacta
                       Bonobo  ccttcccagagtctagagcaggtggccgtgatgccctgccc-tctgcgg------ctgggactccaacta
                      Gorilla  ccttcccagagtccagagcaggtggccgtgatgccctgccc-tctgcgg------ctgggactccagcta
                    Orangutan  ccttcccagagtctagagcaggcggctgtgatgccctgccc-tctgcgg------ctgggactccatcta
                       Gibbon  ccttcccagagtctagagcaggcggccgcgatgccctgccc-tctgcgg------ctgggactccaacta
                       Rhesus  ccttcccagagtctagagcaggcggctgctatgccctgccc-tctgcgg------ctgggactgcaatta
                       Baboon  ccttcccagagtctagggcaggcggctgctatgccctgccc-tctgcgg------ctgggactgcaacta
                 Green monkey  ccttcccagagtctagagcaggcggctgctatgccctgccc-tctgcgg------ctgggactgcaacta
             Proboscis monkey  ccttcccagactctagagcaggcggctgctatgccctgccc-tctgcgg------ctgggactgcaacta
     Golden snub-nosed monkey  ccttcccagactctagagcaggcggctgctatgccctgccc-tctgcgg------ctgggactgcaacta
                     Marmoset  ccttctcagagtctggagcaggcggccaagatgccctgccc-tctgctg------ctgggactccaaatt
              Squirrel monkey  ccttctcagagtctggagcaggcggccgtgatgccctgccc-tctgcgg------ctgggactccagctt
                      Tarsier  ----------gtttagggca-gcagccgaaaggcactgcccttctgtgg------ctgggattccaagt-
                     Bushbaby  cctccccagggcaagtgccaggaggc-----------acca-actgtgg------caagaactcaggcct
                        Mouse  cctttccaggat-taggtca-------------------cc-------a------ctagaaccccag--a
                          Dog  ccttcc-------tggggcgggtg---------------ca-cctgcagggcactgtgggactgt-----
                   Tree shrew  ======================================================================
                  Mouse lemur  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                        Chimp  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                       Bonobo  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                      Gorilla  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                    Orangutan  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                       Gibbon  ctcctgtcccct--ccccggc--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                       Rhesus  ctcctg--ccct--ccccggt--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                       Baboon  ctcctg--ccct--ccccggt--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                 Green monkey  ctcctg--tcct--ccccggt--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
             Proboscis monkey  ctcctgtcccct--ccctggt--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
     Golden snub-nosed monkey  ctcctgtcccct--ccctggt--tcac--tgcctgtgggtcac--------tccc-gctgctcccag
                     Marmoset  ctcctgtcccct--cctccac--tcac--tgcctatgggtccc--------tccc-actgctcccag
              Squirrel monkey  ctcctgtcccct--cccccac--tcac--tgcctatgggtcac--------tcct-gctgctcccag
                      Tarsier  ctcccctccccc--tccatgc--tcac--agcctgtgggcaac--------tccctgtggctcccag
                     Bushbaby  ctccctcccctc--cctctgt--gcacattgcctgtgggtcat--------tccc-gctgtgcccag
                        Mouse  gcccta--ccct--ccccagc--a-----tccctgcag---cc--------cctc-agcgccccttg
                          Dog  ctcccgtccccttgcctcggcagttat--gtcctgctggccactggggccttctt-gctgctcccgg
                   Tree shrew  ===================================================================
                  Mouse lemur  ===================================================================
          Crab-eating macaque  ===================================================================

Alignment block 11 of 231 in window, 32609688 - 32609793, 106 bps 
B D                     Human  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtgcctctgccaggga-
B D                     Chimp  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtgcctctgccaggga-
B D                    Bonobo  ------atggccatgctcattccctcccg-ccacaggccttttgccctggctggtgcctctgctaggga-
B D                   Gorilla  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtgcctctgccaggga-
B D                 Orangutan  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccaggga-
B D                    Gibbon  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccagaga-
B D                    Rhesus  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccaggga-
B D                    Baboon  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccaggga-
B D              Green monkey  ------atggccatgctcattccctcccg-ccacaggccttttgccctggctggtccctctgccaggga-
B D          Proboscis monkey  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccaggga-
B D  Golden snub-nosed monkey  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgccaggga-
B D                  Marmoset  ------atggccatgctcattccctccct-ccacaggccttttgccctggctggtccctctgtcagaga-
B D           Squirrel monkey  ------atggccacgctcattccctccct-ccacaggccttttgccctggctggtccctctgccagaga-
B D                   Tarsier  ------atggc--tgttcattcctccc---ccacagggcttttgccctgactggttcctctgccaggga-
B D                  Bushbaby  ------acagccatgctcattccttccct-ccacagggcttctgccc-ggctagtgcctctgccaggga-
B D                Tree shrew  ------atagctctaggcattttttccctaccaatggggctttgccccgcctggtccttctacaagggc-
B D                     Mouse  ------atagcca-gttaccccattccct-ctatggagcctttaccccagccagtccctctgccaaaga-
B D                       Dog  acagcagaggccatactcacgcaccaccc-ccaca------------------gtccccctgccagggat
B D               Mouse lemur  ======================================================================
B D       Crab-eating macaque  ======================================================================

                        Human  -ctcttcccct------------------aatccttgtgtggctggctcccgctcctactcgc
                        Chimp  -ctcttcccct------------------aatccttgtgcggctggctcccgctcctactcgc
                       Bonobo  -ctcttcccct------------------aatccttgtgcggctggctcccgctcctactcgc
                      Gorilla  -ctcttcccct------------------aatccttgtgcagctggctcccgctcctactcgc
                    Orangutan  -ctctttccct------------------aatccttgtgcggctggctcccgctcctactcac
                       Gibbon  ---ctttccct------------------aatccttgtgtggccggcttctgctcctactcgc
                       Rhesus  -ctcttcccct------------------aatccttgtgt-gctggctcctgctccaacttgc
                       Baboon  -ctcttcccct------------------aatccttgtgt-gctggctcctgctccaacttgc
                 Green monkey  -ctcttcccct------------------aatccttgtgt-gctggctcctgctccaacttgc
             Proboscis monkey  -ctcttcccct------------------aatccttgtgt-gctggctcctgctccaacttgc
     Golden snub-nosed monkey  -ctcttcccct------------------aatccttgtgt-gctggctcctgctccaacttgc
                     Marmoset  -ctcttcccct------------------aacccttgtgc-gctggcttctgctccgcctc--
              Squirrel monkey  -ctcttcccct------------------aacccttgtgc-gctggcttccactccgcctcac
                      Tarsier  -ctcttcccc-------------------agtccttgcgtgtcccgcccctgcttc-gcccag
                     Bushbaby  -ctcttccccc------------------atttct------gc-----cccacttcaa-----
                   Tree shrew  -ttttctccctcagccccctcagtccctcatcccttgtgtatttgg-----------------
                        Mouse  -ccccgtccat------------------tgtcc--------ccagctttgg-----------
                          Dog  tctcttccccc------------------tagtgctgcatggctggctcttactccacctggg
                  Mouse lemur  ===============================================================
          Crab-eating macaque  ===============================================================

Alignment block 12 of 231 in window, 32609794 - 32610028, 235 bps 
B D                     Human  gccccagctc----aag-ggtcacctcctcagaggcccccc--gaccacctgtctcaagcagc-cctgct
B D                     Chimp  gccccagctc----aag-ggtcacctcctcagaggcccccc--gaccacctgtctcaagcagc-cctgct
B D                    Bonobo  gccccagctc----aag-ggtcacctcctcagaggcccccc--gaccacctgtctcaagcagc-cctgct
B D                   Gorilla  gccccagctc----aag-ggtcacctcctcagaggcccccc--gaccacctgtctcaagcagc-cctgct
B D                 Orangutan  gccccagctc----aac-ggtcacctcctcagaggcccccc--gatcacctgtctcaagcaga-cctgct
B D                    Gibbon  gccccagctc----aag-ggtcacctcttcagaggcccccc--aaccacctgtctcaagcagc-cctgct
B D                    Rhesus  accccagctc----aag-ggtcacctcctcagaggccccc---gaccacctgtctcaagcagc-cctgct
B D                    Baboon  accccagctc----aag-ggtcacctcctcagaggccccc---gaccacctgtctcaagcagc-cctgct
B D              Green monkey  gccccagctc----aag-ggtcacctcctcagaggccccc---gaccacctgtctcaagcagc-cctgct
B D          Proboscis monkey  gccccagctc----aag-ggtcacctcctcagaggccccct--gaccacctgtctcaagcagc-cctgct
B D  Golden snub-nosed monkey  gccccagctc----aag-ggtcacctcctcagaggccccct--gaccacctgtctcaagcagc-cctgct
B D                  Marmoset  ------------------agtggcctcctcagaggccccc------tacctgtcttgagcagc-cctgcc
B D           Squirrel monkey  accctgactc----aag-agtgacctcctgagaggccccc-------acctgtctcgagcagc-cctgcc
B D                   Tarsier  gccctggtcc----agc-ggcc-cctcctcagaagccctccctgcccacccatctcaagcagg-cctgct
B D               Mouse lemur  gccccagctc-----ag-gtccctctcc----gagccttctctgaccacctgtctaaagcaggccctgct
B D                  Bushbaby  gccccagctcactcaag-agtcatctcctcagagggcttctctgacctcaagtctaaagcagg-cctgcc
B D                Tree shrew  --tccctctc----aggttgtcacctcct-agaggcctccg--gagcacctgtctaaagcagg-ccgg--
B D                     Mouse  gcagcaactc----aaa-ggtcacctcctcaaaggccttccctggtcacctgtccca--cagg-cttgtc
B D                       Dog  gcctcaactc----aag-tgtcacctc---agaggccttctctgaccccctgtgtgaagcagg-tcagcc
B D       Crab-eating macaque  ======================================================================

                        Human  ----ctcaccccc-ctcactctccatctgagggccctttaaggtctt-tcatggtatttaacaaaaatat
                        Chimp  ----cccaccccc-ctcaatctccatctgagggccctttaaggtctt-tcatggtatttaacaaaaatat
                       Bonobo  ----cccaccccc-ctcactctccatctgagggccctttaaggtctt-tcatggtatttaacaaaaatat
                      Gorilla  ----cccatcccc-ctcactctccatctgagggccctttaaggtctt-tcatggtatttaacaaaaatat
                    Orangutan  ----cccaccccctctcactctccatctgagggccctttaaggtctt-tcatggtaattaacaaaaatac
                       Gibbon  ----cccaccccctctcactctccatctgagggccctttaaggtctt-tcatggtatttaacaaaaatac
                       Rhesus  ----cccaccccctctcgctctccatctgagggccctttaaggtctt-ccatggcatttaacaaaaatac
                       Baboon  ----cccaccccctctcgctctccatctgagggccctttaaggtctt-ccatggcatttaacaaaaatac
                 Green monkey  ----cccaccccctctcgctctccatctgagagccctttaaggtctt-ccatggcatttaacaaaaatac
             Proboscis monkey  ----cccacccc--ctcactctccatctgagagccctttaaggtctt-tcatggcatttaacaaaaatac
     Golden snub-nosed monkey  ----cccaccccctctcactctccatctgagagccctttaaggtctt-tcatggcatttaacaaaaatac
                     Marmoset  ----cccatcccctctcactcgccatctgagggccctttaaggtctt-tcacggcatttaacaaacatgc
              Squirrel monkey  ----cccaccccctctccctcgccatctgagggccctttaaggtctt-tcatggcatttaacaaacatgc
                      Tarsier  ctgcccggccacctctcactcttcattcgagagccctgtgagggctc-ttg-------------------
                  Mouse lemur  ----cctgc--actactactctacagcagagggcccttgtaggtcttgccctggcacttcacagaaatga
                     Bushbaby  ----cctgctgcttcttactctccatcagagggaacttttcagtctt-ccctggcacttaatagaaatga
                   Tree shrew  ----cctgccccctct------------------------aggtctt-ccatggcccttaacagaagtga
                        Mouse  ----ccaag-----cttgctcttcattacaggtccctttaaccgctt------------------gatgg
                          Dog  ----cccactccctcttaccctgcattagagggcacatttaggtctt-tcacggcacttaacaaaaatgg
          Crab-eating macaque  ======================================================================

                        Human  c-aggca-tcacatgtattgtgggcttgtctatt-gtcaatgc-cct-ctcccttcactggggtgtaag-
                        Chimp  c-aggca-tcacatgtattgtgggcctgtctatt-gtcaatgc-cct-atcccttcactggggtgtaag-
                       Bonobo  c-aggca-tcacatgtattgtgggcctgtctatt-gtcaatgc-cct-atcccttcactggggtgtaag-
                      Gorilla  c-aggca-tcacatgtattgtgggcctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
                    Orangutan  caaggca-tcacatgtgctgtgggcctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
                       Gibbon  c-aggca-tcacatgtgttgtggacctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
                       Rhesus  c-aggca-ccccatgtgttgtggacctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
                       Baboon  c-aggca-ccccatgtgttgtggacctgtctatt-gtcaatgc-cct-gtcccttcactagggtgtaag-
                 Green monkey  c-aggcacccccatgtattgtggacctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
             Proboscis monkey  c-aggca-tcccatgtgttgtggacctgtctatt-gtcaatgc-cct-gtcccttcactggggtgtaag-
     Golden snub-nosed monkey  c-aggca-tcccatgtgttgtggacctgtctatt-gtcaatgc-tct-gtcccttcactggggtgtaag-
                     Marmoset  c-aggca-tcccatgcactgtggacctgcc---t-gtcaatgc-ttg-gtcccttcactgggctg-aag-
              Squirrel monkey  c-aggca-tcccatgtgctgtggacctgcctatt-gtcaatgc-tcg-gtctcttcactgggctg-aag-
                      Tarsier  --tggca--------------------------------------ct-ctcctctcattgggacataag-
                  Mouse lemur  c-agtca-tcccacat-ctgt-gacctatctattggccagtgctcct-gtcccctcgttggggtgtcag-
                     Bushbaby  c-agtca-tcccacat-ccat-cacctatctatt-gtcaatgctcct-atccccttgttggggtatgag-
                   Tree shrew  c-agcca-ccctctgtataggcgacctatctatc-atctgtgc-------cctcccattggagcataat-
                        Mouse  t-tgcta-gcccatgc-----------------t-ttaagtgc-cct-gaactct--ttggggtataag-
                          Dog  c-agcca-gcccaggtgctgt--tccctcctatt-gtcagtgt-cctcatcccgacactggggtgtgaac
          Crab-eating macaque  ======================================================================

                        Human  -------ca--ccccatggatcttgttccctgaagtctcctcagggcccagcac
                        Chimp  -------ca--ccccatggatcttgttccctgaagtctcctcagggcccagcac
                       Bonobo  -------ca--ccccatggatcttgttccctgaagtctcctcagggcccagcac
                      Gorilla  -------cg--ccccatggatcttgttccctgaagtctcctcagggcctagcac
                    Orangutan  -------ca--ccccatggatcttgttccctgaagtctcgc--gggcctagcac
                       Gibbon  -------ca--ccccgtggatcttgttccctgaagtctcctcagggcctagcac
                       Rhesus  -------ca--ccccatggatcctgttccctgaagtctcctcagggcctagcac
                       Baboon  -------ca--ccccatggatcctgttccctgaagtctcctcagggcctagcac
                 Green monkey  -------ca--cctcatggatcctgttccctgaagtctcctcagggcctagcac
             Proboscis monkey  -------cg--ccccatggatcctgttccctgaagtctcctcagggactagcac
     Golden snub-nosed monkey  -------ca--ccccatagatcctgtttcctgaagtctcctcagggactagcac
                     Marmoset  -------tg--ccccatggatgttcttccctgaagtcttcacagggcctagcat
              Squirrel monkey  -------tg--ccccatggattttcttccctgaagtcttcacagggcctagcat
                      Tarsier  -------tg--ccccgtgggtc-tgttccctgaagtctcctcaagccccagcac
                  Mouse lemur  -------ct--ccccatggatcgtgttccccggagccccccccaggcctagc--
                     Bushbaby  -------ct--ccccatggatctagtttactggaacctccccagggcttagcac
                   Tree shrew  -------aagctcctatggatcttgattcctggagtctcctcagggtctggcgt
                        Mouse  -------tg--cccccacaatcttgttccctggagtctccctagggcc------
                          Dog  tccccccca--cccctggtatcgtgttccctggagtctcctc----cctgccat
          Crab-eating macaque  ======================================================

Inserts between block 12 and 13 in window
B D                 Bushbaby 101bp

Alignment block 13 of 231 in window, 32610029 - 32610053, 25 bps 
B D                     Human  agggcctgacac---tcagtagatgatt
B D                     Chimp  agggcctgacac---tcagtagatgatt
B D                    Bonobo  agggcctgacac---tcagtagatgatt
B D                   Gorilla  agggcctgacac---tcagtagatgatt
B D                 Orangutan  agggcctgacac---tcagtagatgatt
B D                    Gibbon  agggcctgacac---tcagtagattatt
B D                    Rhesus  aaggcctgacac---tcagtagatgact
B D                    Baboon  aaggcctgacac---tcagtagatgact
B D              Green monkey  aaggcctgacac---tcagtagatgact
B D          Proboscis monkey  agggcctgacac---tcagtagatgact
B D  Golden snub-nosed monkey  agggcctgacac---tcagtagatgact
B D                  Marmoset  ggggcctgacac---tcagtggctgatt
B D           Squirrel monkey  ggggcctgatac---tcagtggctgatt
B D                   Tarsier  agggcctggcat---tcagcagatgatc
B D               Mouse lemur  ---------------tcagt-gatgatc
B D                  Bushbaby  cgggcccgccaaacaacaat-gatggct
B D                Tree shrew  ---------------acagcggatgata
B D                     Mouse  ------tcacat---acagtagataagc
B D                       Dog  aaggcctggtgc---acaatagacaatc
B D       Crab-eating macaque  ============================

Inserts between block 13 and 14 in window
B D                 Bushbaby 166bp

Alignment block 14 of 231 in window, 32610054 - 32610927, 874 bps 
B D                     Human  aataaatatctgtggaatgagaac-----------------------------------atgagcgtcta
B D                     Chimp  aataaatatttgtggaatgagaac-----------------------------------atgagcgtcta
B D                    Bonobo  aataaatatttgtggaatgagaac-----------------------------------atgagcgtcta
B D                   Gorilla  aataaatatttgtggaatgagaac-----------------------------------atgagcgtcta
B D                 Orangutan  aataaatatttgtggaatgagaac-----------------------------------atgagcgtcta
B D                    Gibbon  aataaatatttgtggaatgagaac-----------------------------------atgagcgtcta
B D                    Rhesus  gataaatatttgtggaatgagaac---------------------------------------ttgtcta
B D                    Baboon  gataaatatttgtggaatgagaac---------------------------------------ttgtcta
B D              Green monkey  gataaatatttgtggaatgagaac---------------------------------------ttgtcta
B D          Proboscis monkey  gataaatatttgtggaatgagaac-----------------------------------atgagtgtcta
B D  Golden snub-nosed monkey  gataaatatttgtggaatgagaac-----------------------------------atgagtgtcta
B D                  Marmoset  aataaatatctgtggaatgagaac-----------------------------------atgagcatcta
B D           Squirrel monkey  aacagatatttgtggaataagaac-----------------------------------acgagcgtcta
B D                   Tarsier  aataaatatttgtggaatgagagc-----------------------------------gtgagagtcta
B D               Mouse lemur  agtgaagatttgcggaatgagagc-----------------------------------atgagtgtcca
B D                  Bushbaby  agtaatgatttatggactaagagc-----------------------------------ctgagcatcta
B D                Tree shrew  gatatatgtttgtggaataaggac-----------------------------------gtgagactctg
B D                     Mouse  agtgaacgt-tgtgggat-----------------------------------------ctgagagtcta
B D                       Dog  aataaatatttatggaaaaaaaaaaaaaataaataaataaataaataaatatttatggaatgagaatcta
B D       Crab-eating macaque  ======================================================================

                        Human  c-----cccgcttattgtataaaagcagcagttg-aggttcagagagggtaagtcacttgcccaaggtca
                        Chimp  c-----cccgcttattgtataaaagcagcagttg-aggttcagagagggtaagtcacttgcccaaggtca
                       Bonobo  c-----cccgcttattgtataaaagcagcagttg-aggttcagagagggtaagtcacttgcccaaggtca
                      Gorilla  c-----cccgcttattgtataaaagcagcagttg-aggttcagagagggtaagtcacttgcccaaggtca
                    Orangutan  c-----cccgcttattgtataaaagcagcagttg-aggttcagagagggtaagttacttgcccaaggtca
                       Gibbon  c-----cccgcttattgtataaaagcagcaattg-aggttcagagagggtaagtcacttgcccaaggtca
                       Rhesus  c-----cccccttattgtacaaaagcagcagttg-agcttcagagagggtaagtcacttgcccaaggtta
                       Baboon  c-----cccccttattgtacaaaagcagcagttg-agcttcagagagggtaagtcacttgcccaaggtta
                 Green monkey  c-----cccccttattgtacaaaagcagcagttg-agcttcagagagggtaagtcacttgcccaaggtta
             Proboscis monkey  c-----cccccttattgtacaaaagcagcagttg-aacttcagagagggtaagtcacttgcccaaggtca
     Golden snub-nosed monkey  c-----cccccttattgtacaaaagcagcagttg-aacttcagagagggtaagtcacttgcccaaggtca
                     Marmoset  c-----cttcctcattgcataaaagcagtagtcg-aggttcagagagggtgagtcacttgcccaaggtca
              Squirrel monkey  c-----gctcctcattgcacaaaatcagtagtcg-aggttcagagagggtgagtcacctgcccaaggtca
                      Tarsier  c-----tcccctcattacacagaagcagcaattg-cgactcggaaagggtgagtcacctgcccaaggtca
                  Mouse lemur  c-----ccacttcactgtacagaggcagcagtcg-aggttctgagagggtgagtcacttgcccaaggtca
                     Bushbaby  accctgccagcccactgtacagaggctgccatca-aggttaagagagggtaagtcatttgtccaaagtca
                   Tree shrew  c-----ccctct---tgtacagagacaatgattg-aggttcagagagggcaagtcacttgctcatggtca
                        Mouse  c-----tcctct--gtatatagaggcagcagttgaaagttcagagaggataagccacctgcttaaggtca
                          Dog  c-----ccccctcattgtacagaggcagcaactg-aggttcagagaaggtgagtcatttgcccaaggtca
          Crab-eating macaque  ======================================================================

                        Human  cacaacaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactctgcgtccagtgctct
                        Chimp  cacaacaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactctgcgtccagtgctct
                       Bonobo  cacaacaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactctgcgtccagtgctct
                      Gorilla  cacaacaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactctgtgtccagtgctct
                    Orangutan  cacagcaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactctgcgtccagtgctct
                       Gibbon  cacagcaaaccagaggcagaaccacagcaagagcctggctcagctcacttgactctgcatccagtgctct
                       Rhesus  cacagcaaaccagaggcagaaccacagcaggagcctggctcagcacacttaactctgcatccagtgctct
                       Baboon  cacagcaaaccagaggcagaaccacagcaggagcctggctcagctcacttaactctgcatccagtgctct
                 Green monkey  cacagcaaaccagaggcagaaccacagcaggagcctggctcagctcacttaactctgcatccagtgctct
             Proboscis monkey  cacagcaaaccagaggcagaaccacagcaggagcctggctcagttcacttaactctgcatccagtgctct
     Golden snub-nosed monkey  cacagcaaaccagaggcagaaccacagcaggagcctggctcagttcacttaactctgcatccagtgctct
                     Marmoset  cacagcaaaccacaggcagaaccacagcaggagcctggctcagctcacttgactctgtgtccagtactct
              Squirrel monkey  cacagcaaaccagaggcagaaccacagcaggagcctggctcagctcacttgactcagtgtccagtgctct
                      Tarsier  cacaggaaact-gaggcagaaccacagcaggaccccagctcagctcactggactctgcatccagagcact
                  Mouse lemur  cacagccaaccagaggcagaaccagagcaggagcccagctcagttcacttgactctgcatctagcactct
                     Bushbaby  cacagcaaaccacaggca------------gagccctgctcatttctcttgactctgcatccagtgctct
                   Tree shrew  cacagcagaccagaggcagaaccacagcagcagcccagctgagctcagcactgactgcatccagggctcc
                        Mouse  cacagcaaata------agaatgtcagccagggcccagctcagctcacctga--ctgtgtccagtgctct
                          Dog  cacagcaaatcagaggcagaactaaggcaggaccccagcttggctcacctgacgctgtgtccc---ctct
          Crab-eating macaque  ======================================================================

                        Human  tcagcctacaccataactagcactcagagttcaac---------------cagcctcaccccagcctttc
                        Chimp  tcagcctacaccataactagcactcagagttcaac---------------cagcctcaccccagcctttc
                       Bonobo  tcagcctacaccataactagcactcagagttcaac---------------cagcctcaccccagcctttc
                      Gorilla  tcagcctacaccataactagcactcagagttcaac---------------cagcctcaccccagcctttc
                    Orangutan  tcagcctacaccataactagcactcagagctcaac---------------cagcctcaccccagcctttc
                       Gibbon  tcagcctacaccataactagcactcagaactcaac---------------cagcctcaccccagcctttc
                       Rhesus  tcagcctacaccataactagcactcagagctcaac---------------cagcctcaccccagcctttc
                       Baboon  tcagcctacaccataactagcactcagagctcaac---------------cagcctcaccccagcctttc
                 Green monkey  tcagcctacaccgtaactagcactcagagctcaac---------------caacctcaccccagcctttc
             Proboscis monkey  tcagcctacatcataactagcacgcagagctcaac---------------cagcctcaccccagcctttc
     Golden snub-nosed monkey  tcagcctacatcataactagcactcagagctcaac---------------cagcctcaccccagcctttc
                     Marmoset  tcagcttacaccataactagcagtcaggtctcaac---------------cagcctctccccagcctttc
              Squirrel monkey  tcagcttatatcataactagcattcagggctcaac---------------cagcctctccccagcctttc
                      Tarsier  ccggggtataccataactggccctctgggagccacagtgataaggggttgaggtcccaccccagcctgtc
                  Mouse lemur  gcagcctgcaccataactaacactcagggctcagc---------------cagccttgccccagcctttc
                     Bushbaby  gcagcctacaccataactagcacttagggctcagc---------------cagccccaccccagcctttc
                   Tree shrew  tctgcctccaccatcactagcactcaggccgcagc---------------ctgccccaccccagcctttc
                        Mouse  ctaac--------tatttcgttcttggggctcagc---------------cagacccacac-------tc
                          Dog  ccagcctgcaccagagctagcactcaaggatc------------------aggtcgtggcccagcctctc
          Crab-eating macaque  ======================================================================

                        Human  aaatacaacctttatccctcatccccatctttcggtcctgggaagaaagaaaatctaagtagaagaggtg
                        Chimp  aaatacaacctttatccctcatccccatctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
                       Bonobo  aaatacaacctttatccctcatccccatctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
                      Gorilla  aaatacaacctttatccctcatccccatctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
                    Orangutan  agatacaacctttatccctcatccccatctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
                       Gibbon  agatacaacctttatccctcatccccgtctttcagtcctgggaagaaagaaaatgtaagtaggagaggtg
                       Rhesus  agatacaacctctatccctcatccccctctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
                       Baboon  agatacaacctctatccctcatccccctctttcggtcctgggaagaaagaaaatgtaagtagaagagttg
                 Green monkey  agatacaacctctatccctcatccccctctttcggtcctgggaagaaagaaaatgtaagtagaagaggtg
             Proboscis monkey  agatacaacctctatccctcatccccctctttcagtcctgggaagaaagaaaatgtaagtagaagaggtg
     Golden snub-nosed monkey  agatacaacctctatccctcatccccctctttcagtcctgggaagaaagaaaatgtaagtagaagaggtg
                     Marmoset  agatacaaccactaccccttattcccatcctttggtcctggggagaaagaaaatgtaggtggaagaagtg
              Squirrel monkey  agatacaaccactaccccttattcccatcctttggtcctggggagaaagaaaatgtaggtggaagaggtg
                      Tarsier  agatgtgacttcaaccccttatcactatctttctatccaagggagaaagaagaaggaagtagaaaagaca
                  Mouse lemur  agctgtgacctctacctctaaccactcatttttggctctgggaagaaagaa---gtgggtaggaaaggtg
                     Bushbaby  agctttgtcctctacctctaacctctatcttttggttctggggagaaagaa---gttggtagga------
                   Tree shrew  acgtgtgacctcagtac----------tctttttattctagagtaaaagaa---gtgggtagaagaagtg
                        Mouse  a-atatcacctctacctccaagcccaagttt--------agagcagaagaagaagtagggagga-agatg
                          Dog  atataggacctctgtccctccccactaccttttggttccggggagaagggagaagtgagtagaaagggtg
          Crab-eating macaque  ======================================================================

                        Human  gaagggggcaaacaagggagactaagtatcacag----gtgaacaggtgctcaggattcctgta--gtcc
                        Chimp  gaagggggcaaacaagggagactaagtatcacag----gtgaacgggtgctcaggattcctgta--gtcc
                       Bonobo  gaagggggcaaacaagggagactaagtatcacag----gtgaacgggtgctcaggattcctgta--gtcc
                      Gorilla  gaagggggcaaacaagggagactaagtatcacag----gtgaacgggtgctcaggattcctgta--gtcc
                    Orangutan  gaagggggcaaacaagggagagtaagtatcacag----gtgaacaggtgctcaggattcccaca--gtcc
                       Gibbon  gaagggggcaaacaagggagagtaagtatcacag----gtgaacgggtgctcaggattcctgta--gtcc
                       Rhesus  gaagggggcaaacaagggagagtaaggatcacag----gtgaacaggtgctcaggattcctgta--gtcc
                       Baboon  gaagggggcaaacaagggagagtaaggatcacag----gtgaacaggtgctcaggattcctgta--gtcc
                 Green monkey  gaagggggcaaacaagggagagtaaggatcacag----gtgaacaggtgctcaggattcctgta--gtcc
             Proboscis monkey  gaagggggcaaacaagggagagtaagtatcacag----gtgaacaggtgctcaggattcttgta--gtcc
     Golden snub-nosed monkey  gaagggggcaaacaagggagagtaagtatcacag----gtgaacaggtgcttaggattcttgta--gtcc
                     Marmoset  gaagggggcaaac------gggagagtatcagaggtgagtgaatgggtgctcaggattcctgta--gtcc
              Squirrel monkey  gaagcagggata---------gtgagtatcagag----gtgaatgggtgctcagggttcctgta--gtcc
                      Tarsier  gaagggg--aaaagaggggaggtgagtgtcagag----acaa--gggtcctcggggctccccca--gtcc
                  Mouse lemur  gaaggaggcaaa-gacgcagcgtgaggatcagag----atgtgtgggtcctcagggctcaccta--gtcc
                     Bushbaby  -aaggaggcaaa-gatgcagagtgaggatcagat----atgtgtaggtcctcaggacacacctt--gccc
                   Tree shrew  gaagggagcccacaggggagagtgagtcctggag----aaggatgggtcctccagacgcacctaccgccc
                        Mouse  gagggggataaaccgtgcagaggatgtgtgagaa----ctgcatggctctttggaactcccctg--ttcc
                          Dog  gaagggagcaagcaggg--aagtgagtgtctaag----aagaatgggccttcgggagttaccta--gtcc
          Crab-eating macaque  ======================================================================

                        Human  catgtaacagattccagcaa----ggttgggttcctggcctgg--------ggcctctgggcctctgggc
                        Chimp  catgtaacagattccagcaa----ggttgggtgcctggcctgg--------ggcctctgggcc-------
                       Bonobo  catgtaacagattccagcaa----ggttgggtgcctggcctgg--------ggcctctgggcc-------
                      Gorilla  catgtaacagattccagcaa----ggttgggtgcctggcctgg--------ggcctctgggcc-------
                    Orangutan  catgtaacagattccagcaa----ggttgggtgcctggtctgg--------ggcctctgggcc-------
                       Gibbon  catgtaacagattccagcaaggttggttgggtgcctggcctgg--------gacctctgggcctctgggc
                       Rhesus  catgtaacagagtccagcaa----ggttgggtgcctggcc-gg--------ggtctctgggcctctgggc
                       Baboon  catgtaacagagtccagcaa----ggttgggtgcctggcc-gg--------ggtctctgggcctctgggc
                 Green monkey  catgtaacagagtccagcaa----ggttgggtgcctggcc-gg--------ggtctctgggcccctgggc
             Proboscis monkey  tatgtaacagagtccagcaa----gattgggtgcctggct-tg--------ggtctctgggcttctgggc
     Golden snub-nosed monkey  tatgtaacagagtccagcaa----gattgggtgcctggct-tg--------ggtctctgagcctctgggc
                     Marmoset  catgtgacagagtccagcaa----ggttgggtgtcttgcctgg--------ggcctctgggcc-------
              Squirrel monkey  catgtaacagagtccagcaa----ggttggatgtcttgcctggggccgcgtggcctctgggcc-------
                      Tarsier  cacctgccag--tctagcct----agctgggcacctggcctgg--------ggcctctgggcctcggggc
                  Mouse lemur  cacctggcagagcccagcaa----ggctgggcacctggccggg--------ggcctctgggcc-------
                     Bushbaby  catctgacagagtccagcaa----gggtgggcacctggcctgg--------ggcccctgggca-------
                   Tree shrew  c---tgccagcttccagcca----gcctgggtgtctaccc-tg--------ggcctcgggacctctgggc
                        Mouse  tgtctgacaga--ccagtaa----agttggacactttgtccag--------ggtctctgggcctccagaa
                          Dog  cacctgacggggtccggtaa----ggctgagcgtctggcc-ag--------ggcctgtgggcc-------
          Crab-eating macaque  ======================================================================

                        Human  --------ccatggtccagtctcatccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                        Chimp  ---------catggtccagtctcatccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                       Bonobo  ---------catggtccagtctcatccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                      Gorilla  ---------catggtccagtgtcatccttgcccgcttgagctggaaagggttaaattttgtgcttggctc
                    Orangutan  ---------tctgggcctgc----tccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                       Gibbon  --------ccatggtccagtctcatccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                       Rhesus  --------ccatggaccagtctcgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                       Baboon  --------ccatggaccagtctcgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                 Green monkey  --------ccatggaccagtctcgtccttgcctgcttgaactggaaagggttaaattttgtgcttggctc
             Proboscis monkey  --------ccacggaccagtctcgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
     Golden snub-nosed monkey  --------ccacggaccagtctcgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                     Marmoset  ---------catgttccagtcttgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
              Squirrel monkey  ---------cacgttccagtcttgtccttgcctgcttgagctggaaagggttaaattttgtgcttggctc
                      Tarsier  --------ccaaggtccagtctc-ccctcgcctgcttgagctagaaagggttaaattttgtgcctggctc
                  Mouse lemur  ---------cgcagtccagtctcgctcttgcctgcttgagccggaaggggtt-aattttgtgcttggctc
                     Bushbaby  ---------cacagtccagccttgccattgcctgcttgagctggaaggggttaaattttgcgcttggctc
                   Tree shrew  --------ccacggtccagtcttgccctggctttcctgagctggaaggggttaaattttgtgcttggctc
                        Mouse  cctccaagcccccattctgtcttatctttgcttgtctgagctagaaggggttaagttttgtgcttggctc
                          Dog  ---------cacagtccactcttgtccttgcctgcctgagctggaaggggttaaattttgtgc-tgcctc
          Crab-eating macaque  ======================================================================

                        Human  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                        Chimp  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                       Bonobo  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                      Gorilla  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                    Orangutan  ctgccttgctgtggaccatggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                       Gibbon  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                       Rhesus  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatatacttgaaggg
                       Baboon  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatatacttgaaggg
                 Green monkey  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
             Proboscis monkey  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
     Golden snub-nosed monkey  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                     Marmoset  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
              Squirrel monkey  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                      Tarsier  ctggcttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaaggg
                  Mouse lemur  ctggcttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaagag
                     Bushbaby  ctggcttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccatacacttgaagag
                   Tree shrew  ctggcttgctgtggaccatggctgggacagaacatctgtctgttgctatggttgccgtacacttgaaggg
                        Mouse  ctgccttgctgtggaccgtggctgggacagaacatctgtctgttgctatggttgccgtacacttgaaggg
                          Dog  ctggctcact-tggactgtgcctgggacagaacatctgtctgttgctatggttgccgtacatttgaaggg
          Crab-eating macaque  ======================================================================

                        Human  gatggctggataattatggcaaacgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                        Chimp  gatggctggataattatggcaaacgccgccgagcgggtgagcgggtgcccggaagtggctcgggaccctt
                       Bonobo  gatggctggataattatggcaaacgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                      Gorilla  gatggctggataattatggcaaacgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                    Orangutan  gatggctggataattatggcaaacgccgccgagcaagtgagcgtgtgcccggaagtggctcgggaccctt
                       Gibbon  gatggctggataattatggcaaacgctgccgaacgagtgagcgggtgcccggaagtggctcgggaccctt
                       Rhesus  gatggctggataattatggcaaatgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                       Baboon  gatggctggataattatggcaaatgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                 Green monkey  gatggctggataattatggcaaatgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
             Proboscis monkey  gatggctggataattatggcaaatgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
     Golden snub-nosed monkey  gatggctggataattatggcaaatgccgccgagcgagtgagcgggtgcccggaagtggctcgggaccctt
                     Marmoset  gatggctggataattacggcaaatgccgctgagcaagtgagcgggtgcccggaagtggctcgggaccctt
              Squirrel monkey  gatggctggagaattacagcaaatgccgccgagcgagtgagcgggtgcccggaaggggctcgggaccctt
                      Tarsier  aatggctggataattatggtgaatgctgctgcgtgagcgagcgaatgcccggaagtggctcaggaccctt
                  Mouse lemur  gatggctgggtaattatggcaaacgccgctgagcgagtgtgcgggtgcccggaagtggctcaggacgctt
                     Bushbaby  gatggctggataattatggcaaatgctgccgactgagtgagcgggtgcccggaagtggttcaggaccctt
                   Tree shrew  gatggctggataattatggcaaacgccgctgagcgagggagcgggtgcccggaagtggctcaggaccctt
                        Mouse  gatggctggataattatggc-agtgccgccgagtgagggagctgatgcccggaattggctc-ggaccctt
                          Dog  gatggctggataattatggcaagcgaggccgagtgagtgagcaggtgcccagaagtggctcaggacccct
          Crab-eating macaque  ======================================================================

                        Human  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggctcactgtggagcccctggccctgg
                        Chimp  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggctcactgtggagcccctggccctgg
                       Bonobo  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggctcactgtggagcccctggccctgg
                      Gorilla  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggctcactgtggagcccctggccctgg
                    Orangutan  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggctcactgtggagcccctggccctgg
                       Gibbon  gcccgcccagtgcagtggcaggctgtgggccccttaccca-ctggttcactgtggagtccctggccctgg
                       Rhesus  gcccgcccagtgcagtggcaggctgtggaccctttaccca-ctggttcactgtggagcccctggccctgg
                       Baboon  gcccgccaagtgcagtggcaggctgtggaacctttaccct-ctggttcactgtggagcccctggccctgg
                 Green monkey  gcccgcccagtgca-tggcaggctgtggaccctttaccca-ctggttcactgtggagccccttgccctgg
             Proboscis monkey  gcccgcccagtgcagtggcaggctgtggaccccttaccca-ctggttcactgtggagcccctggccccgg
     Golden snub-nosed monkey  gcccgcccagtgcagtggcaggctgtggaccccttaccca-ctggttcactgtggagcccctggccctgg
                     Marmoset  gcccacccagtgcagtggcaggctgcaggccccttaccca-ccagctcgctgtgggg-cccaggccctgg
              Squirrel monkey  gcccgcccagggcagtggcaggctgcgggccccttaccca-ccagctcgctgtgagg-ccctggccctgg
                      Tarsier  gcccgcccggggcaggggcaggatgcaggcccctgg-----ctgcttctcggcaaagccctatgcccagg
                  Mouse lemur  gcccgcccggtgcagaggcaggctgcaggactctagcctggctgggtcactgaggag-ccctgtacccag
                     Bushbaby  gcccacccagggcaggggcaggctgcagggcccttgcctagccgggtcaccgtggag-ccttgttctcag
                   Tree shrew  gcccgcccagtgcagtggcaggctgcgggcccctcgcctggctgggtcgctgtggcg-ccctgtccccag
                        Mouse  gcccacacggtgcagcagtagcc------------------ttgg------gtagatactctgggcc---
                          Dog  gcccgcccagca---tgggcggcagcaggccccgcgcctggtcagctcaccgtcag--ccctgtccccag
          Crab-eating macaque  ======================================================================

                        Human  acttgagttcctgagctag--cagaggagtcagctggggccactttggcctttgcttcatgagtgagcct
                        Chimp  acttgagttcctgagctag--cagaggagtcagctggggccactttggactttgcctcatgagtgagcct
                       Bonobo  acttgagttcctgagctag--cagaggagtcagctggggccactttggactttgcctcatgagtgagcct
                      Gorilla  acttgagttcctgagctag--cagaggagtcagctggggccactttggcctttgcctcatgagtgagcct
                    Orangutan  acttgagctcctgagctag--cagaggagtcagctggggccactttggcctttgcgtcatgagtgagcct
                       Gibbon  acttgagctcctgagctag--cagaggagtcagctggggccactttggcctttgcgtcacgagtgagtct
                       Rhesus  acttgagctcctgagctag--cagaggagtcagctggagccactttggcctttgcgtcatgagtgagcct
                       Baboon  acttgagctcctgagctag--cagaggagtcagctggagccactttggcctttgcgtcatgagtgagcct
                 Green monkey  acttgagctcctgagctag--cagaggagtcagctggagccactttggcctttgcgtcatgagtgagcct
             Proboscis monkey  acttgagctcctgagctag--cagaggagtcagttggagccactttggcctttgcgtcatgagtgagcct
     Golden snub-nosed monkey  acttgagctcctgagctag--cagaggagtcagttggagccactttggcctttgcgtcatgagtgagcct
                     Marmoset  cctcgagctcctgaaccgg--cagaggagtcagctgggaccgctttgggctttgcgtcacgaatgagcct
              Squirrel monkey  cctcgagctcctgaaccgg--cagaggagtcagctggggccgctttgggctttgcgtcatgaatgagcct
                      Tarsier  -cgtgggattctggcctgg--tggaggcgtcggctagcgccaccatggccttcgcataatgaatgggcct
                  Mouse lemur  gcctgggctcctgggccgg--cggaggagtcagctggagccaccttggcctttgcataatgaacgggcc-
                     Bushbaby  gcttgggctcctgggctgg--gggagaagtcagctggagacaccttggcctttgcataatgagtgggcct
                   Tree shrew  gcttgggctctggctgctg--cggaggcgtcagctggagccaccttggcctttgcataatgaatgggcgt
                        Mouse  ------------------a--tggaggagtcagagagaacctc-gtggcctttgcacaatgagcaggcct
                          Dog  gtttcagctcctaggccgggtgtggggagtcagccagagccaccttggcctttgcacaatgaataggcta
          Crab-eating macaque  ======================================================================

                        Human  ggctacagagccccccgtgaatcctggagcagggcagacaccagcagcactgggcaccggagcct----g
                        Chimp  ggctacagagccccccgcgaatcctggagcagggcagacaccagcagcactgggcaccggagcct----g
                       Bonobo  ggctacagagccccccgcgaatcctggagcagggcagacaccagcagcactgggcaccggagcct----g
                      Gorilla  ggctacagatccccccgagaatcctggagcagggcagacaccagcagcattgggcaccggaggct----g
                    Orangutan  ggctacagagccccccgcgaatcctggagcagggcaggcaccagcagcattgggtaccggagcct----g
                       Gibbon  ggctacagagcccccagtgaatcctggagcagggcagacaccagcagcattgggcaccggagcct----g
                       Rhesus  ggctacagagtcccccaggaatcctggagcagggcagacaccagcagcattgggcaccggagcct----g
                       Baboon  ggccacagagtcccccaggaatcctggagcagggcagacaccagcagcattgggcaccggagcct----g
                 Green monkey  ggccacagagtcccccaggaatcctggagcagggcagacaccagcagcattgggcaccggagcct----g
             Proboscis monkey  ggccacagagccccccaggaatcctggagcagggcagacaccagcagcactgggcaccggagcct----g
     Golden snub-nosed monkey  ggccacagagccccccaggaatcctggagcagggcagacaccagcagcactgggcagcggagcct----g
                     Marmoset  ggccacggagccccctgggaatcctggggcagggcagacaccagcagcattgggcactggagcct----g
              Squirrel monkey  ggccacggagccccc-gggaatcctggggcagggcagacaccagcagcattgggcagcagagcct----g
                      Tarsier  ggccacagagcccct--gggatcctggagtggggtggatgccggtggccttgggcacggcagcct----g
                  Mouse lemur  ggccaccgagcccct-gggaatcccagagcaggccagacactggcagcctggggctccagggcct----g
                     Bushbaby  ggccagggagcccct-gggaatgctgaaacaagccagatgctggcagccttgggcactggagcct----g
                   Tree shrew  ggccac-gagcgcct-gagaagcctggagcagggcaggcgctggcagccttgggccgcggagtgtgcggg
                        Mouse  ggctacaagggccctggggaaaccatgagctggatagacgctggtggccttgggcaccagag--t----g
                          Dog  ggccatggggcttct-gggaaccccggaacagggcaggcactgg---------------gagcct----g
          Crab-eating macaque  ======================================================================

                        Human  tgggctgtaggcctgctggcac--aggtggtgggctcagataatgccctggtgcc
                        Chimp  tgggctgtaggcctgctggcac--aggtggtgggctcagataatgccctggtgcc
                       Bonobo  tgggctgtaggcctgctggcac--aggtggtgggctcagataatgccctggtgcc
                      Gorilla  tgggctgtaggcctgctggcac--aggtggggggctcagataatgccctggtgcc
                    Orangutan  tgggctgtaggcctgatggcac--gggtggtgggctcagataatgccctggtgcc
                       Gibbon  tgggctgtaggcctgctggcac--gggtggtgggct-agataatgccctggtgcc
                       Rhesus  tgggctgtaggcctgctggcat--gggtggtggtctcggataatgccctggtgcc
                       Baboon  tgggctgtaggcctgctggcat--gggtggtggtcttggataatgccctggtgcc
                 Green monkey  tgggctgtaggcctgctggcac--gggtggtggtctcggataatgccctggtgcc
             Proboscis monkey  tgggctgtaggcctgctggcac--gggtggtggtcttggataatgccctggtgcc
     Golden snub-nosed monkey  tgggctgtaggcctgctggcac--gggtggtggtcttggataatgccctggtgcc
                     Marmoset  caggttgtcggcctgctggcac--gcttggtaggctcggacaatgccc-ggtgcc
              Squirrel monkey  cgggctgtcggcctgctggcac--acgtggtgggctcagacaatgccc-ggtgcc
                      Tarsier  tgggcagccggcctgctggcac--gggtggtgggctctgataacaccc-agtgcc
                  Mouse lemur  cgggcagtgagcctgctggcac--gggtggaaggccccgatagtgccccagtgct
                     Bushbaby  tgggcagtgggcctgctggcac--aggtggtgggctctgataatgccccagtgcc
                   Tree shrew  cgggcggcgggcctgctggcac---ggtggcgggctctgataatgcccccttgcc
                        Mouse  tgggcagccagcctgctggcgtgggggaggagaactctgataattcccttgtgtt
                          Dog  agggcagtcggccagccagcat--gagtggtgggctgtgataaggccc-aatgcc
          Crab-eating macaque  =======================================================

Inserts between block 14 and 15 in window
B D               Tree shrew 426bp
B D                    Mouse 2bp

Alignment block 15 of 231 in window, 32610928 - 32611470, 543 bps 
B D                     Human  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg----ccatgaatgccccagagcccag
B D                     Chimp  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg----ccatgaatgccccagagcccag
B D                    Bonobo  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg----ccatgaatgccccagagcccag
B D                   Gorilla  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg----ccatgaatgccccagagcccag
B D                 Orangutan  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cccatgaatgtgccggagcccag
B D                    Gibbon  actgtgtcttccccca-ggggagaagccctgtcatctgtccctg-g-cccatgaatgcgccggagcccag
B D                    Rhesus  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cccgtgaatgccccggagcccag
B D                    Baboon  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cccgtgaatgccccggagcccag
B D              Green monkey  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cctgtgaatgccccggagcccag
B D          Proboscis monkey  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cccatgaatgccccagagcccag
B D  Golden snub-nosed monkey  actgtgtcctccccca-ggggagaagccctgtcatctgtccctg-g-cccatgaatgccccagagcccag
B D                  Marmoset  actgtgtcctccccggaggggagaagccctgtcatctgtcccag-g-cccacgaatgccctggagcccag
B D           Squirrel monkey  actgtgtcctccccgg-gggaagaagccctgtcatctctccctg-g-cccatgaatgccctggagcccag
B D                   Tarsier  tgtgtgtctttgccc--ggggagaagacctgccattcgtcccag-c-cccgggagctccctggagc----
B D               Mouse lemur  tctgtgtcctcccctg-agggagaagccctgtcatccgtgtctg---------------------cccgg
B D                  Bushbaby  tctgtgtccttcccca-aatgagaagctctgtcatccattcctggc-cccatgtgtcccctgccacccag
B D                     Mouse  tgtgtgtcctccccct-ggggagaaatcctgcattctgttcctg-gtcccgcaagttccttggagcccag
B D                       Dog  tctgtgtcct-------ggggaggagccctgtcatctgtccctg---tccccgtgtgtccctg-------
B D                Tree shrew  ======================================================================
B D       Crab-eating macaque  ======================================================================

                        Human  gaggcagcaggtggagaccgactgcccacgtcctgtcctctcggctctgcctgctcgcagg-g----atg
                        Chimp  gaggcagcaggtggagaccgactgcccacgtcctgtcctctcggctctgcctgctcacagg-g----atg
                       Bonobo  gaggcagcaggtggagaccgactgcccacgtcctgtcctctcggctctgcctgctcacagg-g----atg
                      Gorilla  gaggcagcaggtggagaccgactgcccacgtcctgccctctcggctctgcctgctcgcagg-g----atg
                    Orangutan  gaggcagcaggcagagaccgactgcccacgtcctgccctctcggctctgcctgctcgcagg-g----atg
                       Gibbon  gaggcagcaggcggagaccgactgcccacgtcctgccctctcggctctgcctgcttgcaag-g----atg
                       Rhesus  gaggcagcaggcggagactgactgcccacgtcctgccctcttggctctgcctgctctcagg-g----atg
                       Baboon  gaggcagcaggcggagactgactgcccacgtcctgccctcttggctctgcctgctctcagg-g----atg
                 Green monkey  gaggcagcaggcggagactgactgcccacatcctgccctcttggctctgcctgctctcagg-g----atg
             Proboscis monkey  gaggcagcaggcggagactgactgcccacgtcctgccctcttggctctgccttctctcagg-g----atg
     Golden snub-nosed monkey  gaggcagcaggcggagactgactgcccacgtcctgccctcttggctctgcatgctctcagg-g----atg
                     Marmoset  gaggcagcaggcggagactgactgcccacgtcccgccctctcagctctgcctgctcttggg-a----atg
              Squirrel monkey  gaggcagcaggcggagactgactgcccacgtcccgccctctcggctctgcgtgctcgcggg-g----atg
                      Tarsier  ------------ggagactgatgggctgtgtcctgccttttctgctctgcctgctgtgggatg----acg
                  Mouse lemur  gaggcagcaggcagagactgaccacctacgccctgcccgctctgttctgcctgcttggggggt----gag
                     Bushbaby  gacgcagtaggtaga---------------tcctgccctctctgctctgcctgtttaggggtg----acg
                        Mouse  g-gatagcaaatgtggaccg----cctccatcctggttt----gatctgcttgcttactgg-gtgacatg
                          Dog  ------------ggagactg-----ctctgctgaggcccactggcttttc------------t----gag
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  cttcagcttcctcgtctgctcat-ggag---gatgagagggcctccctggcagagctgaaggaggtctgt
                        Chimp  cttcagcttcctcgtctgctcat-ggag---gatgagagggcctccctggcagagctgaagggggtctgt
                       Bonobo  cttcagcttcctcgtctgctcat-ggag---gatgagagggcctccctggcagagctgaagggggtctgt
                      Gorilla  cttcagcttcctcgtctgctcat-ggag---gatgagagggcctccctggcagagctgaaggaggtctgt
                    Orangutan  cttcagcttcctcgtccgctcat-ggag---gatgagaaggcctccctggcagagctgaaggaggtctgt
                       Gibbon  cttcagcttcctcgtctgctcat-ggag---gatgagagggcctccctggcagagctgaaggaggtctgt
                       Rhesus  cttcagcttcctcgtctgctcat-ggag---gatgacagggcctccctggcagagctgaaggaggtctgt
                       Baboon  cttcagcttcgtcgtctgctcat-ggag---gatgacagggcctccctggcagagctgaaggaggtctgt
                 Green monkey  cttcagcttcctcgtctgctcat-ggag---gatgacagggcctccctggcagagctgaaggaggtctgt
             Proboscis monkey  tttcagcttcctcgtctgctcat-ggag---gatgacagggcctccctggcagagctgaaggaggtctgt
     Golden snub-nosed monkey  tttcagcttcctcgtctgctcat-ggag---gatgacggggcctccctggcagagctgaaggaggtctgt
                     Marmoset  cttcagcttcctcgtctgctcac-ggag---gatgagagggcctccctggcagagctgaa---agtctgt
              Squirrel monkey  cttcagcttcctcgtctgctcac-agag---gatgagagggcctccctggcagagctgaa---ggtctgt
                      Tarsier  cttcagcatctccatctgctcat-ggaggatgatgagagggcctccctggaagagcgaaagaag--ctgt
                  Mouse lemur  cttcggcttcctcatctgctcgcaggag---gataagagggcctccctgggagagctgcaggaggcctgc
                     Bushbaby  ctttagcttcc-cacctcctaat-ggag---aataagaggac--ccctggcagagttgtgggaggcctgc
                        Mouse  ccagaccctcgggctctatgcat-agag---ga------------cctg--------------ggtctgt
                          Dog  cctcagttcccc--tctgcctat-ggag---gataagaggct----------------aaggagctctat
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  ctg-gatagggc-----ctggggaagaggtggctctgggacaggaaatggttgccccaac--cttgctca
                        Chimp  ctg-gatagggc-----ctggggaagaggtggctctgggacaggaaatggttgtcccaac--cttgctca
                       Bonobo  ctg-gatagggc-----ctggggaagaggtggctctgggacaggaaatggttgtcccaac--cttgctca
                      Gorilla  ctg-gatagggc-----ctggggaagaggtggctctgggacaggaaatggttgccccaac--cttgctca
                    Orangutan  ctg-gatagggc-----ctggggaagaggtggctctgggacaggaaaaggttgccccaac--cttgctca
                       Gibbon  ctg-gatagggc-----ctggggaagaggtggctctcggacaggaaatggttgccccaac--cttgctca
                       Rhesus  gtg-gacagggc-----ctggggaagaggtggctctgggacaggaaatggttgccccgac--ctcgctca
                       Baboon  gtg-gacaggac-----ctggggaagaggtggctctgggacaggaaatggttgccccgac--cttgctca
                 Green monkey  gtg-gacagggc-----ctggggaaaaggtggctctgggacaggaaatggttgccccgac--cttgctca
             Proboscis monkey  gtg-gatagggc-----ctggggaataggtggctctgggacaggaaatggttgccccaac--cttgctca
     Golden snub-nosed monkey  gtg-gatagggc-----ctggggaagaggtggctctgggacaggaaatggttgccccaac--cttgctca
                     Marmoset  gtg-gatagggc-----ccggggaagaggtggctat-ggacaggaaatggttgccccaac--cttgctca
              Squirrel monkey  gtg-gatagggc-----ccagggatgaggtggctct-ggacaggaagtggttgccccaac--cttgctca
                      Tarsier  gtg-gactgggg-----cctgggcagaggcggctctggggcaggaaagggtggccccagc--ctcactca
                  Mouse lemur  gtgcgatagggccagggccggggcagaggtggctctgggacaggaaatgttcgccccagc--cttgctcg
                     Bushbaby  gtgggataggac-----ctgggacagaggtggtgctgggacaggaaatagttgccccaac--cttgctta
                        Mouse  gtgggacaggac-----gt------------------------------gtggctccagt--ctggctcc
                          Dog  gtgggacagggc-----ct-gggcagaggtggctctgggacaggaaatggttgccccaccggcctgctca
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  gcaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcccgtggaaaggc
                        Chimp  gcagggga---tggggaaccttaagctgccgtggattt---------agactgtggtcccgtggaaaggc
                       Bonobo  gcagggga---tggggaaccttaagctgccgtggattt---------agactgtggtcccgtggaaaggc
                      Gorilla  gcaggggg---tggggaaccttaaggtgccgtggattt---------agactgtggtcccgtggaaaggc
                    Orangutan  gcaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcccatggaagggc
                       Gibbon  gtaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcccgtggaagggc
                       Rhesus  gcaggggg---tggggaaccttaagctgctgtggattt---------agactgtggtcctgtgaaagggc
                       Baboon  gcagggg-----------------------gtggattt---------agactgtggtcctgtgaaagggc
                 Green monkey  gcaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcctgtgaaagggc
             Proboscis monkey  gcaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcctgtggaagggc
     Golden snub-nosed monkey  gcaggggg---tggggaaccttaagctgccgtggattt---------agactgtggtcctgtggaagggc
                     Marmoset  acagggg----tggggaaacgtaagctgcc-tggattt---------agagtgtggtcctgcggaagggc
              Squirrel monkey  acagggg----tgggaaaccttaagctgcc-tggattt---------agagtgtggtcctgcagaagggc
                      Tarsier  gcaggcgc---aggagagtctccagctgttgagggttc---------atagtgtggcccca-ggaagggc
                  Mouse lemur  gcaggcagc--tggtaaacttcaggctgccgtggattt---------atagtgtgggcccacagacctgc
                     Bushbaby  acaggcagc--tggtgaacttta-gctactgtgggttt---------atagcgtggtcccataaaagggc
                        Mouse  ttggatggcttgtgtgcatcccaagct-----------------------------------------gc
                          Dog  g--gtagc---tggtgaacgtcg-gctactgcggatttatcacctgcaaagtgtggtctcacgccaaggc
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  tggagattgcttggcacagtaaccagctacatgatttgtgcttggatccaacccttgcccagccaagctg
                        Chimp  tggagattgcttggcacagtaaccagctacatgatttgtgcttggatccaacccttgcccagccaagctg
                       Bonobo  tggagattgcttggcacagtaaccagctacatgatttgtgcttggatccaacccttgcccagccaagctg
                      Gorilla  tggagattgcttggcacagtaaccagctacatgatttgtgcttggatccaacccttgcccagccaagctg
                    Orangutan  tagagattgcttggcacagtaaccagctacatgatttgtgcttggatccaacccttacccagccaagctg
                       Gibbon  tggagattgcttggcacagtaactagctgcatgatttgtgcttggatccaacccttgcccagccaagctg
                       Rhesus  tggagattgcttggcacagcaaccagctgcatgatttgtgcttggatccaacccttgcccagtcaagctg
                       Baboon  tggagattgcttggcacagcaatcagctgcatgatttgtgcttggatccaacccttgcccagtcaagcta
                 Green monkey  tggagattgcttggcacagcaaccagctgcatgatttgtgcttggatccaacccttgcccagtcaagctg
             Proboscis monkey  tggagattgcttggcacagcaaccagctgcatgatttgtgcttggatccaacccttgcccagccaagctg
     Golden snub-nosed monkey  tggagattgcttggcacagcaaccagctgcatgatttgtgcttggatccaacccttgcccagccaagctg
                     Marmoset  tggagattgcttggcacagcaaccagctgtgtaatttgtgctgggatccaacacctgcccagccaagctg
              Squirrel monkey  tggcaattgcttggcacagccatcagctgtgtagtttgtgctgggatccaacacctgcccagccaagctg
                      Tarsier  tggaggtggcctggcacaacggccggtcacatg-tgtgcgcctggatccgacccctg-ccagccaggctg
                  Mouse lemur  tgcaggctgtttggcacagcggccaattgcacgatttgtgcttggatcc-acccttgcccagccgagctg
                     Bushbaby  tggaggttgcttggcacagtggccagccatataatttgtgcccggattg-acccctgcccagccaagctg
                        Mouse  tggatattggtctgta----------tcacatgataag---------------------------atctg
                          Dog  tggaggctgctcagca--gtgaccagttgcgtgatttgcccttggatccaaccctggccctgatgagctg
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  tgggca-ggcagaggggcttgcacccgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                        Chimp  tgggca-ggcagaggggcttgcacccgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                       Bonobo  tgggca-ggcagaggggcttgcacccgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                      Gorilla  cgggca-ggcagaggggcttgcacccgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                    Orangutan  tgggca-ggcagaggggcttgcacctgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                       Gibbon  tgggca-ggcagaggggcttgcacctgggagggcca--gcccttccaccccacctc-ctccagcc--tcg
                       Rhesus  tgggca-ggc-gaggggcttgcacccgggagtgcca--gcctttccaccccacctc-ctccagcc--ccg
                       Baboon  tgggca-ggc-gaggggcttgcacccgggagtgcca--gcctttccaccccacctc-ctccagcc--ccg
                 Green monkey  tgggca-ggc-gaggggcttgcacccgggagtgcca--gcctttccaccccacctc-ctctagcc--ccg
             Proboscis monkey  tgggca-ggcagaggggcttgcacccgggggggcca--gcctttccattccacctc-ctccagcc--cca
     Golden snub-nosed monkey  tgggca-ggcagaggggcttgcacccgggggggcca--gcctttccattccacctc-ctccagcc--cca
                     Marmoset  tgggca-ggcagaggggcttgcaccagggagggtca--tctctctacccccacctc-ctccactc--ctg
              Squirrel monkey  tggaca-ggcagaggggcttgcaccagggagggtcatctctctctacctccacctc-ctccactc--ctg
                      Tarsier  tgggca-gacagaggggc-tgcaccagggagggtcc--tgtcttc-------------------------
                  Mouse lemur  ggcgca-ggcagaggagctcacaccaaggagggtcg--ccctccccac----------------------
                     Bushbaby  ggggca-ggcatcagggcatgcaccaaggagggccg--tcctccctac----------------------
                        Mouse  ggaaca-ggcagagaggcttgttagcctgaggttca----------------cacc-cacagatg--act
                          Dog  tgggcagggcagacgggcttttgccaggaagggccc-----ttcccagactccctcactctatcctgtcc
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  ccatggtaggcagctgagcttcctgaaagctcagtacagactcgcaagctggcagaccccagaggcccga
                        Chimp  ccatggtaggcagctgagcttcctgaaagctcagtacagactcgcaagctggcagaccccagaggcccga
                       Bonobo  ccatggtaggcagctgagcttcctgaaagctcagtacagactcgcaagctggcagaccccagaggcccga
                      Gorilla  ccacggtaggcagctgagcttcctgaaggctcagtacagactcgcaagctggcagaccccagaggcccga
                    Orangutan  ccatggtagggagctgagcttcctgaaggcccagtgcagactcacaagctggcagaccccagaggcccaa
                       Gibbon  ccatggtagggagctgagcttcctgaaggctcagtgc--actcacaagctggcagagcccagaggcccaa
                       Rhesus  ccatggtagggagctgagcttcctgaaggctcagtgcagactcacaagctggcagaccccagaggcccaa
                       Baboon  ccatggtagggagctgagcttcctgaaggctcagtgcagactcacaagctggcagaccccagaggcccaa
                 Green monkey  ccatggtagggagctgagcttcctgaaggttcagtgcagactcacaagctggcagaccccagaggcccaa
             Proboscis monkey  ccatggtagggagctgagcttcctgaaggctcagtgcagactcacaagctggcagaccccagaggcccaa
     Golden snub-nosed monkey  ccatggtacggagctgagcttcctgaaggctcagtgcagactcacaagctggcagaccccagaggcccaa
                     Marmoset  ccatggtagggagctgagcttcctg-----------cagacccacaggctggcagaccccagagggccaa
              Squirrel monkey  ccatggtagggagccgagcttcctg-----------cagacccacaggctggcagaccccagaagcccaa
                      Tarsier  ctgaggcagggagctcggcttccggaaggttctatgcagactcgcagcctggtgga-cccagag------
                  Mouse lemur  ccgaagcaggg-gctctgcttcccgaaggctctatgcaggctcacaggctggcagaccccagaggcctga
                     Bushbaby  ccaaagcagag----------------ggctc------agctcacaggctgacagacctcaggggcctga
                        Mouse  ctgagacaggga-ctgagcttc------------tgttgtgtcccaggtcagca----------------
                          Dog  ccaaggcagggatctcagcttcctgcagactctgtgcagact--cagtccagcagaccccagaggcccga
                   Tree shrew  ======================================================================
          Crab-eating macaque  ======================================================================

                        Human  gagatgctggcttccaactcctt
                        Chimp  gagatgccggcttccaactcctt
                       Bonobo  gagatgccggcttccaactcctt
                      Gorilla  gagatgccggcttccaactcctt
                    Orangutan  gagatgctggcttccaactcctt
                       Gibbon  gagatgctggcttccaactcctt
                       Rhesus  gagatgctggcttccaactcctc
                       Baboon  gagatgctggcttccaactcctc
                 Green monkey  gagatgctggcttccaactcctc
             Proboscis monkey  gagatgctggcttccaactcctt
     Golden snub-nosed monkey  gagatgctggcttccaactcctt
                     Marmoset  gagatgctggcttccaactcctt
              Squirrel monkey  gagatgctggcttccaactcctt
                      Tarsier  --------ggcttccacctccct
                  Mouse lemur  gcgatgctgacttccaactccct
                     Bushbaby  gcaatgctggcttccaactccct
                        Mouse  ----------cctccagat----
                          Dog  gagctactg-cctctaacttcct
                   Tree shrew  =======================
          Crab-eating macaque  =======================

Alignment block 16 of 231 in window, 32611471 - 32611612, 142 bps 
B D                     Human  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaaggtcaccctcacaggttcctggc
B D                     Chimp  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaaggtcaccctcacaggttcctggc
B D                    Bonobo  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaaggtcaccctcacaggttcctggc
B D                   Gorilla  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaaggtcaccctcacaggttcctggc
B D                 Orangutan  ctgtaaccaccagc--gagac----agaggccgggcaccctccccaaggtcatcctcacaggttcctggc
B D                    Gibbon  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaaggtcaccctcacaggttcctggc
B D                    Rhesus  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D       Crab-eating macaque  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D                    Baboon  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D              Green monkey  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D          Proboscis monkey  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D  Golden snub-nosed monkey  ctgtaaccaccagt--gagac----agaggccaggcaccctccccaaggtcaccctcacaggttcctggc
B D                  Marmoset  ctgtaaccaccagt--gagac----agaggctgggcaccctccccaaggccacccttacaggttcctgac
B D           Squirrel monkey  ctgtaaccaccagt--gagac----agaggccgggcaccctccccaagtccacccttacaggttcctggc
B D                   Tarsier  ----------------------------------------------------------------------
B D               Mouse lemur  ctgcag-cgcccgt--gag-c----agagcctgggcaccctctcttaattcaccctcgcaggctcctggt
B D                  Bushbaby  ctgcaattgcccgt--gagac----agaggctgggcacactccccaaggtcaccctcacaggctcctggc
B D                     Mouse  ------------gt--gagacaaaaaaaaaccctgtccagtccccaaggtcaccccta-aacttcctggc
B D                       Dog  ctg----cgccagctggagac----agaggatagacgtcttccccaaggtcacccttacaggttcctggc
B D                Tree shrew  ======================================================================

                        Human  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                        Chimp  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                       Bonobo  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                      Gorilla  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                    Orangutan  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                       Gibbon  tcttccccatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                       Rhesus  tcttccctatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
          Crab-eating macaque  tcttccctatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                       Baboon  tcttccctatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
                 Green monkey  tcttccctatgctgctgc-----------------cccct-ctcctggcaactt-----ccctcct----
             Proboscis monkey  tcttccctatgctgctgc-----------------cccct-ctcctggcaacct-----ccctcct----
     Golden snub-nosed monkey  tcttccctatgctgctgc-----------------cccct-ctcctggcaacct-----ccctcct----
                     Marmoset  tcttcttcatgctgctgcccacctcccgccacccccccca-ccccc-ccaactt-----ccctcct----
              Squirrel monkey  tcttcttcatgctgctgccca--------------cccca-cccctggcaactt-----ccctcct----
                      Tarsier  -----------------------------------------------------------------t----
                  Mouse lemur  tcttcctcgtgccactgt-----------------cccctcctcctggaaacttctcatctctcct----
                     Bushbaby  tcttccctgtgccactgc-----------------cctctcctcctggcaacttctctcctctcct----
                        Mouse  tcttctccatgacactgc-----------------cccctcctcctggtgatttctctcttctcct----
                          Dog  tctccctt-tgccactgc-----------------cccctcctcctggcaactt-----ctcccctctcc
                   Tree shrew  ======================================================================

                        Human  cccatctgcctccctcacataacaa--ttg--cagtcat
                        Chimp  cccatctgcctccctcacataacaa--ttg--cagtcat
                       Bonobo  cccatctgcctccctcacataacaa--ttg--cagtcat
                      Gorilla  cccatctgcctccctcacataacaa--ttg--cagtcat
                    Orangutan  cccatctgcctccctcacataacaa--ttg--cagtcat
                       Gibbon  cccatctgcctccctcacgtaacaa--ttg--cagtcat
                       Rhesus  cccatctgcctccctcacataacaattttg--cagtcat
          Crab-eating macaque  cccatctgcctccctcacataacaattttg--cagtcat
                       Baboon  cccatctgcctccctcacataacaattttg--cagtcat
                 Green monkey  cccatctgcctccctcacataacaattttg--cagtcat
             Proboscis monkey  cccatctgcctccctcacataacaattttg--cagtcat
     Golden snub-nosed monkey  cccatctgcctccctcacataacaattttg--cagtcat
                     Marmoset  tccatctgcctccctcacataacaa--ttg--cagtaat
              Squirrel monkey  tccgtctgcctccctcacataacaa--ttg--cagtaac
                      Tarsier  tgcagcagcctccctcatgcaacaa--tcg--cagccac
                  Mouse lemur  cccatctgcctccctcacataacaa--ggg--caat---
                     Bushbaby  cctatctgcttccctcacataacaa--tca--caat---
                        Mouse  cccacctgcctccctcaccgaccga--ccgatcagtcac
                          Dog  cccatctgcttccctcacataacaa--ttg--caataat
                   Tree shrew  =======================================

Inserts between block 16 and 17 in window
B D                 Marmoset 765bp
B D                    Mouse 2bp

Alignment block 17 of 231 in window, 32611613 - 32611623, 11 bps 
B D                     Human  aataactgaca
B D                     Chimp  aataactgaca
B D                    Bonobo  aataactgaca
B D                   Gorilla  aataactgaca
B D                 Orangutan  aataactgaca
B D                    Gibbon  aataactgaca
B D                    Rhesus  aataactgaca
B D       Crab-eating macaque  aataactgaca
B D                    Baboon  aataactgaca
B D              Green monkey  aataactgaca
B D          Proboscis monkey  aataactgaca
B D  Golden snub-nosed monkey  aataactgaca
B D           Squirrel monkey  gataactgacc
B D                   Tarsier  aatacctggca
B D               Mouse lemur  aatatataact
B D                  Bushbaby  aataactaacc
B D                     Mouse  cagagctaggc
B D                       Dog  aagaactgcca
B D                  Marmoset  ===========
B D                Tree shrew  ===========

Alignment block 18 of 231 in window, 32611624 - 32611684, 61 bps 
B D                     Human  ccatgccgggcactgagctgtgtgcaca-----cggcttactcctttaacaa----cctacagggagggt
B D                     Chimp  ccatgccgggcactgagctgtgtgcaca-----cggcttactcctttaacaa----cctacagggagggt
B D                    Bonobo  ccatgccgggcactgagctgtgtgcaca-----cggcttactcctttaacaa----cctacagggagggt
B D                   Gorilla  ccatgctgggcactgagctgtgtgcaca-----cggcttactcctttaacaa----cctgcagggagggt
B D                 Orangutan  ccaggcagggcactgagctgtgcgcaca-----cggcttactcctttaacaa----cctacaaggagggt
B D                    Gibbon  ccatgccgggcactgagctgtgtgcaca-----cggcttactcctttaacaa----cctacagggagggt
B D                    Rhesus  tcatgccgggcactgagctgtatgcaca-----tggcttacttctttaacaa----cctacagggagggc
B D       Crab-eating macaque  ccatgccgggcactgagctgtatgcaca-----tggcttacttctttaacaa----cctacagggagggt
B D                    Baboon  ccatgccgggcactgagctgtatgcaca-----tggcttacttctttaacaa----cctacagggagggt
B D              Green monkey  ccatgccgggcactgagctgtatgcaca-----tggcttacttctttaacaa----cctacagggagggt
B D          Proboscis monkey  ccatgccgggcactgagctgtatgcaca-----tggcttacttctttaacaa----cttatagggagggt
B D  Golden snub-nosed monkey  ccatgccgggcactgagctgtatgcaca-----cggcttacttctttaacaa----cttacagggagggt
B D           Squirrel monkey  ccatgccggccactgagctgtgt------------gctcactcctttcacaa----cctatagggagggt
B D                   Tarsier  tca-gctgggctctgagctctccccaca-----tttgctcgtccctttacag----cctgtgggaagg--
B D                  Bushbaby  tagttccaggtacctagctctatgcttat----tagcttattccttcaacaa----cctatgaggaaggt
B D                     Mouse  acaagccaagcaatcttttgtgcatcct-----ctctgtgtagctgcaaggaggggcctacaggaccggc
B D                       Dog  ttgtgc-aggtgccgggctctccgtgcatttgcttatttacttctttcaaca----cctgtaaggaagat
B D                  Marmoset  ======================================================================
B D                Tree shrew  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 18 and 19 in window
B D                    Mouse 1bp

Alignment block 19 of 231 in window, 32611685 - 32612068, 384 bps 
B D                     Human  gcc----atttttaatgctgttttcactgggagattattgaggcatgcagcagtaaagagagctccccaa
B D                     Chimp  gcc----atttttaatgctgttttcactgggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                    Bonobo  gcc----atttttaatgctgttttcactgggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                   Gorilla  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                 Orangutan  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                    Gibbon  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                    Rhesus  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D       Crab-eating macaque  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D                    Baboon  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D              Green monkey  gcc----attcttaatgctgttttcacagggagattattgaggcatgcagcagtaaagagagcttcccaa
B D          Proboscis monkey  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagctgtaaagagagcttcccaa
B D  Golden snub-nosed monkey  gcc----atttttaatgctgttttcacagggagattattgaggcatgcagctgtaaagagagcttcccaa
B D                  Marmoset  gtc----atttttaatactgttttcacagggagatgattgaggcatacagcagtaaagaaagcttcctaa
B D           Squirrel monkey  gcc----atttgtaatactgttttcacagggagatgattgaggcatgcagcagtaaagagagcttcccac
B D                   Tarsier  ggc----ttttgcaatcctgcttcca-------------gaggcttggag-agtaa----gatctcccga
B D                  Bushbaby  gcc----atttttaatgttgtttttagagagaaattatcaagacatggagcagcaaggagatcttcccca
B D                     Mouse  gccttcagtctttctcaccactttggcagagagattctagagacccagagcaa-ggagtgatcttcctat
B D                       Dog  gtc----atttcgaatgctgttttcagatcgggaatatcga--cacagagcagtaaagtgatcttcccaa
B D                Tree shrew  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gttctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                        Chimp  gttctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                       Bonobo  gttctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                      Gorilla  gttctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                    Orangutan  attctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                       Gibbon  gttctcctggctgggaagtagtagagcccagaagctccaaacagggccactctgga---cactg-actcc
                       Rhesus  gttctcctggctgggaagtagtacagctcagaagctccaaacgaggccactctgga---cactg-actcc
          Crab-eating macaque  gttctcctggctgggaagtagtacagctcagaagctccaaacgaggccactctgga---cactg-actcc
                       Baboon  gttctcctggctgggaagtagtacagctcagaagctccaaacgaggccactctgga---ccctg-actcc
                 Green monkey  gttctcctggctgggaagtagtacagctcagaagctccaaacgaggccactctgga---caccg-actcc
             Proboscis monkey  gttctcctggctgggaagcagtacagcccagaagctccaaacggggccactctgga---cactg-actcc
     Golden snub-nosed monkey  gttctcctggctgggaagtagtacagcccagaagctccaaacagggccactctgga---cactg-actcc
                     Marmoset  gttctcctggctgggcagtagcacagcccagaagctccaaacagggccactctgga---cactg-actcc
              Squirrel monkey  gttctcctggctgggcagtagcacagcccaggagctccaaacagggccactttgga---ctctg-actcc
                      Tarsier  gttc-ctcagctggtaaatagtacagcctagatgttccaaacagggccaccctggg---tactg-actca
                     Bushbaby  gctcccctggctgataagtagtacagcctagaaactccaaacagaaccactctgag---caccg-actcc
                        Mouse  ctttctct-gctggcaagaagtccagcctggtggtgccaagtggggccaccctgggactccctgaactcc
                          Dog  gttcccctggctgg-cagtaggataacccaggaggtcaaaacggggccactctggg---caccg-cctct
                   Tree shrew  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ttttctttc-cc---------cctcccactaaagatgacc-ccttgagagccaagat-ggtcttattctt
                        Chimp  ttttctttc-cc---------cctcccactaaagaggacc-ccttgagagccaagat-ggtcttattctt
                       Bonobo  ttttctttc-cc---------cctcccactaaagaggacc-ccttgagagccaagat-ggtcttattctt
                      Gorilla  ttttctttc-cc---------cctcccactaaagatgacctccttgagagccaagat-ggtcttattctt
                    Orangutan  ttttctttc-cc---------cctcccactaaagatgacctccttgagagccaagat-ggtcttattctt
                       Gibbon  ttttctttc-cc---------cctcccactaaagatgacctccttgagagccaagat-ggtcttattctt
                       Rhesus  ttttctgtc-cc---------cctcccactaaagatgacctccttgagagccaagat-ggtcttattctt
          Crab-eating macaque  ttttctgtc-cc---------cctcccactaaagatgatctccttgagagccaagat-ggtcttattctt
                       Baboon  ttttctgtc-cc---------cctcccactaaagatgacctccttgagagccaagat-ggtcttattctt
                 Green monkey  ttttctgtc-cc---------cctcccacgaaagatgacctccttgagagccaagat-ggtcttattctt
             Proboscis monkey  ttttctgtc-cc---------cctcccactaaagatgacctccttgagagccacgat-ggtcttattctt
     Golden snub-nosed monkey  ttttctgtc-cc---------cctcccactaaagatgacctccttgagagccacgat-ggtcttattctt
                     Marmoset  ttttctgtc-cc---------cctcccactaaaggtgatctccttgagagccaagat-ggtcttgttctt
              Squirrel monkey  ttttctgtc-cc---------tctcccactaaaggtgacccctttgagagccaagat-ggtc-tgttctt
                      Tarsier  tttcctgtc-ac---------cctccccttaaggatgacttctggaaaggccagggt-ggtctgggtctt
                     Bushbaby  ttttctgtc-tc---------cctcccccaaaggactgtctccttgagggccaggat-agt-tgcttctt
                        Mouse  ttctctgac-tccctgccctgcctgcccttaaaggtgacctc--tgaaagccaagag-aaa-------tc
                          Dog  tcttctgtctcc---------cctccccctgaggatgacc-tcttgatgtcagagatgggtctggtgctt
                   Tree shrew  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ctgtttctccagctctgttcacagaggaggcatggatgcacatttaactttccacgcatgcattc-----
                        Chimp  ctgtttctccagctctgttcacagaggaggcatggatgcacatttaactttccatgcatgcattc-----
                       Bonobo  ctgtttctccagctctgttcacagaggaggcatggatgcacatttaactttccatgcatgcattc-----
                      Gorilla  ctgtttctccagctctgttcacagaggaggcatggatgcacgtttaactttccatgcatgcattc-----
                    Orangutan  ctgtttctccagctctgttcacagaggaggcatggatgcacgtttaactctccatgcatgcattc-----
                       Gibbon  ctgtttctccagctctgtgcacagaggaggcatggatgcacgtttaactttccatgcatgcattc-----
                       Rhesus  ctgtttctccagctctgtgcacagaggaggcacagatgcacatttaactttccatgcatgcatta-----
          Crab-eating macaque  ctgtttctccagctctgtgcacagaggaggcacagatgcacatttaactttccatgcatgcatta-----
                       Baboon  ctgtttctccagctctgtgcacagaggaggcacagatgcacatttaactttccatgcatgcatta-----
                 Green monkey  ctgtctctccagctctgtgcacagaggaggcacagatgcacgtttaactttccatgcatgcatta-----
             Proboscis monkey  ctgtttctccagctctgtgcacagaggaggcacagatgcacatttaactttccatgcatgcatta-----
     Golden snub-nosed monkey  ctgtttctccagctctgtgcacagaggaggcacagatgcacatttaactttccatgcatgcatta-----
                     Marmoset  ttgtctctccagctctgtgcccagaggaggcacagatgcacgtttcattttccaagcatgtgttc-----
              Squirrel monkey  ctgtctctccagctctgtgcccagaggaggcacggatgcacgtttcactttcccagcatgtgttc-----
                      Tarsier  ctgtcttcccaaatctgcatgtaaaggagccacgaacgcac-ttgaactctccatacattcattcacgca
                     Bushbaby  cggtttccccagctctatgcacagagaaggcacataagcacgctcgactttc--------tattt-----
                        Mouse  ctgactcctcggatctgcacacatacaatg--ttaactcacacacaat----cacagccgaatct-----
                          Dog  cagttttgccagctctgtgcata-------ctttcttgttcattcatttacgcatgcatgcattc-----
                   Tree shrew  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---------------attcaatatgcactgagcac------aggcgccgggccctgtgctgagtgaatca
                        Chimp  ---------------attcaatatgcactgagcac------aggtgccgggccctgtgctgagtgaatca
                       Bonobo  ---------------attcaatatgcactgagcac------aggtgccgggccctgtgctgagtgaatca
                      Gorilla  ---------------attcaatatgcactaagcac------aggcgccgggccctgtgctgagtgaatca
                    Orangutan  ---------------attcaatatgcactgagcac------aggcgccgggccctgtgctgagtgaatca
                       Gibbon  ---------------attcaatatgcactgagcac------aggcgccgggccctgtgctgagtgaatca
                       Rhesus  ---------------attcaatatgcactaagcacctctt-atgcgccaggccctgtgctgagtgaatca
          Crab-eating macaque  ---------------attcaatatgcactaagcacctctt-atgcgccaggccctgtgctgagtgaatca
                       Baboon  ---------------attcaatatgcactaagcacctctt-atgcgccaggccctgtgctgagtgaatca
                 Green monkey  ---------------attcaatatgcactaagcacctctt-atgtgccaggccctgtgctgagtgaatca
             Proboscis monkey  ---------------attcaatatgcactaagcacctctt-atgcgccaggccctgtgctgagtgaatca
     Golden snub-nosed monkey  ---------------attcaatatgcactaagcacctctt-atgcgccaggccctgtgctgagtgaatca
                     Marmoset  ---------------actcaacatgcattgagcacctcta-atgcgccatggcctgtgctgggtgaatca
              Squirrel monkey  ---------------actcagcatgcactgagcacctcta-atgtgccagggcctgtgctgggtgaatca
                      Tarsier  tgtgtatattcatgaattcagtgtgcgctgagctcctcctgtggtgccaggacctgggctgggtgagtct
                     Bushbaby  ---------------attcagtctgctttgggctt--ctt-atgtgctgggccctgtgctgggtgaatca
                        Mouse  ---------------actccgcatgctc-------------a---gccaggccctgtgtc---tgattca
                          Dog  ---------------attcactatgccctgagcacccctt-atgtgccacgccctgtgctgggtgaatag
                   Tree shrew  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gtgaaccctcttccccacattgggctatccagagg-ctcaaaagacatttg-cc----ccagggcacaga
                        Chimp  gtgaaccctcttccccacattgggctatccagagg-ctcaaaagacatttg-cc----ccagggcacaga
                       Bonobo  gtgaaccctcttccccacattgggctatccagagg-ctcaaaagacatttg-cc----ccagggcacaga
                      Gorilla  gtgaaccctcttccccacattgggctatccagagg-ctcaaaagacatttg-cc----ccagggcacaga
                    Orangutan  atgaaccctcttccccacattgggctatccagagg-ctcaaaagacatctg-cc----ccagggcacaga
                       Gibbon  atgaaccctcttccccacattgggctatccagggg-ctcaaaagacatctg-cc----ccagggcacaga
                       Rhesus  atgaaccctcttccccacattgggctatccagagg-ctcaaaagacatctg-tt----ccagggcacaga
          Crab-eating macaque  atgaaccctcttccccacattgggctatccagagg-ctcaaaagacatctg-tt----ccagggcacaga
                       Baboon  atgaaccctcttccccacattgggctatccagagg-ctcaaaagacatctg-tt----ccagggcacaga
                 Green monkey  atgaaccctcttccccacattgggctatccagagg-ctcaaaagacatctg-tt----ccagggcacaga
             Proboscis monkey  atgaacccccttccccacattgggctatctagagg-ctcaaaagacatctg-tt----ccagggcacaga
     Golden snub-nosed monkey  atgaaccctcttccccacattgggctatctagagg-ctcaaaagacatctg-tt----ccagggcacaga
                     Marmoset  atgaaccctcttccccacgtagggctatccagagg-ctcaaaagacatctg-tc----tcctggcacaga
              Squirrel monkey  atgaaccctcttccccacgtagggctatccagagg-ctcaaaagacatctg-tc----ccctggcatgga
                      Tarsier  atggacttgctgacccacaccgggcaatcgggagg-ctc---gggcctctg-ac----ccagggcaaaga
                     Bushbaby  gtgggcactcttccctgcagtgggctgtccagagg-ccccggggacatctgacc----tcagtgcacaga
                        Mouse  gtaaa-gctcggtccagaatctgcccatccaggga-ccc-agggacacctg-ctaccaccagtgtacaca
                          Dog  atggatccccttcctcacattggccaatcctgaggtccccaaggacatctgacc----tcagtgcacaga
                   Tree shrew  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ----gattcaaacgaaggat
                        Chimp  ----gattcaaacgaaggat
                       Bonobo  ----gattcaaacgaaggat
                      Gorilla  ----gattcaaacgaaggat
                    Orangutan  ----gattcaaacgaaggat
                       Gibbon  ----gattcaaatgaaggat
                       Rhesus  ----gattcaaatgaaggat
          Crab-eating macaque  ----gattcaaatgaaggat
                       Baboon  ----gattcaaatgaaggat
                 Green monkey  ----gattcaaatgaaggat
             Proboscis monkey  ----gattcaaatgaaggat
     Golden snub-nosed monkey  ----gattcaaatgaaggat
                     Marmoset  ----gattcaaatgagggat
              Squirrel monkey  ----gattcaaacgagggat
                      Tarsier  ----gattcaag-gaaggat
                     Bushbaby  ----gattcaagtgaaagat
                        Mouse  ----atcctgaattagacac
                          Dog  aactaattcaaatgaaggat
                   Tree shrew  ====================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNN

Inserts between block 19 and 20 in window
B D                  Tarsier 241bp
B D                 Bushbaby 1bp

Alignment block 20 of 231 in window, 32612069 - 32612142, 74 bps 
B D                     Human  gaagttactctggcagccattacctcccagca-tctcccattggcc-tgaaaggggcagggcagtgacca
B D                     Chimp  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtgacca
B D                    Bonobo  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtgacca
B D                   Gorilla  gaagttactctggcagccattacctcccagcgctctcccattggcc-tgaaagtggcagggcagtgacca
B D                 Orangutan  gaagttactctggcagccattacctcccagcactctcccattggct-tgaaaggggcagggcagtggcca
B D                    Gibbon  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtggccg
B D                    Rhesus  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtggcca
B D       Crab-eating macaque  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtggcca
B D                    Baboon  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggggcagggcagtggcca
B D              Green monkey  gaagttactctggcagccattacctcccagcactctcccattggct-tgaaaggggcagggcagtggcca
B D          Proboscis monkey  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggagcagggcagtggcca
B D  Golden snub-nosed monkey  gaagttactctggcagccattacctcccagcactctcccattggcc-tgaaaggagcagggcagtggcca
B D                  Marmoset  gaagttactctggcagccagtacctcccagcactctcccattggcc-tgagag--gcagggcagtggcca
B D           Squirrel monkey  g--gttactctggcagccattccctcccagcactctcccactggcc-tgagag--gcagggcagtggcca
B D                  Bushbaby  aaaggcactctggtacccattacgtccttgcactctcccaccagccttgaggaggacaaggcagtggcca
B D                     Mouse  -tatagattcaagccccttctagctgccagcact-tcccagaggcc-tgagatagacagggcaggggcca
B D                       Dog  ----cagtccgggcag----------cctggaagctcccactggcc-ggagggaggcagagcagtggccc
B D                Tree shrew  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  caccct
                        Chimp  caccct
                       Bonobo  caccct
                      Gorilla  caccct
                    Orangutan  caccct
                       Gibbon  caccct
                       Rhesus  caccct
          Crab-eating macaque  caccct
                       Baboon  caccct
                 Green monkey  caccct
             Proboscis monkey  caccct
     Golden snub-nosed monkey  caccct
                     Marmoset  cacctg
              Squirrel monkey  tgcctt
                     Bushbaby  cacctt
                        Mouse  cgccct
                          Dog  tgggct
                   Tree shrew  ======
                  Mouse lemur  NNNNNN
                      Tarsier  ======

Alignment block 21 of 231 in window, 32612143 - 32612167, 25 bps 
B D                     Human  catgttacagc----agaagaaatgaaag
B D                     Chimp  catgttacagc----ggaagaaatgaaag
B D                    Bonobo  catgttacagc----ggaagaaatgaaag
B D                   Gorilla  catgttacagc----agaagaaatgaaag
B D                 Orangutan  catgttacagc----tg-agaaatga---
B D                    Gibbon  tatgttatagc----tgaagaaatgaaag
B D                    Rhesus  catgttacagc----tgaagaaatgaaag
B D       Crab-eating macaque  catgttacagc----tgaagaaatgaaag
B D                    Baboon  catgttacagc----tgaagaaatgaaag
B D              Green monkey  catgttacagc----tgaagaaatgaaag
B D          Proboscis monkey  catgttacagc----tgaagaaatgaaag
B D  Golden snub-nosed monkey  catgttacagc----tgaagaaatgaaag
B D                  Marmoset  catgtttcagc----tgaagaaatgaaag
B D           Squirrel monkey  catgtt-----------------------
B D                  Bushbaby  catgttacagc----tgagacaatggaag
B D                Tree shrew  catgcttcagtacagtgaggaaaagaag-
B D                     Mouse  cgaggcacagt----tgaggaaatgagag
B D                       Dog  -----cacagc----tgtggagatggaa-
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  =============================

Inserts between block 21 and 22 in window
B D                    Mouse 2bp

Alignment block 22 of 231 in window, 32612168 - 32612300, 133 bps 
B D                     Human  ctcagagatatgaggagccctgtcgaaggtcatacagccatgtctcaggtggggcagcctctggaaccca
B D                     Chimp  ctcagagatatgaggagccctgtcgaaggtcatacagctatgtctcaggtggggcagcctctggaatcca
B D                    Bonobo  ctcagagatatgaggagccctgtcgaaggtcatacagctatgtctcaggtggggcagcctctggaatcca
B D                   Gorilla  ctcagagatatgaggagccctgtcgaaggtcatacagctatgtctcaggtggggcagcctctggaatcca
B D                 Orangutan  ----------------------------------------------------------------------
B D                    Rhesus  ctcagagatattaggagcactgcccaaggtcacacagctatgtctcaggtggggaagcctctggaatcca
B D       Crab-eating macaque  ctcagagatattaggagccctgcccaaggtcacacagctatgtctcaggtggggaagcctctggaatcca
B D                    Baboon  ctcagagatattaggagccctgcccaaggtcacacagctatgtctcaggtggggaagcctctggaatcca
B D              Green monkey  ctcagagatattaggagccctgcccaaggtcacacagctatgtctcaggtggggaagcctctggaatcca
B D          Proboscis monkey  ctcagagatattaggagccctgcccaaggtcacacagctatgtctcaggtggggaagcctctggaatcca
B D  Golden snub-nosed monkey  ctcagagatattaggagccctgcccaaggtcacacagctatgtctcagttggggaagcctctggaatcca
B D                  Marmoset  ctcagagacattaggagccctgcccaaggtcacacagatatgtctcaagtgggacagcccctggaatcca
B D           Squirrel monkey  -acagagacactaggagccctgcccaaggtcacacagatatgtctcaagtgggacggcccctggaatcca
B D                  Bushbaby  ctcagagtgattaggggccctgcccaagggcacacagctatgtcccgggtagggtggttcctggagccta
B D                Tree shrew  ctcagagacatatg--accctgcc-aaggtcacacagc-atg----------------ccctggagccca
B D                     Mouse  ctccaag--attaggggac--gttcaaggacacacagctatgtcccatgaggggcaggccctggtgcctg
B D                       Dog  -------------gaggatctgcccaaggtcacac----ttgccccaggtggggaagcccctaggaccca
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ggaattctgca-ccccacagagctcggtcagcagagaagactgcctgcccaggcat-ggggatga
                        Chimp  ggaattctgca-ccccacagagctcggtcagcagagaagactgcctgcccaggcat-ggggatgg
                       Bonobo  ggaattctgca-ccccacagagctcggtcagcagagaagactgcctgcccaggcat-ggggatgg
                      Gorilla  ggaattctgca-ccccatagagctcggtcagcagagaagactgcctgcccaggcat-ggggatgg
                    Orangutan  -----nnnnnn-nnnnacagagctcagtcagcagagaaggctgcctgcccaggcat-ggggatgg
                       Rhesus  ggaattctgca-ccccacagagctcagtcagcagagaaggctgcctgcccaggcat-ggggatgg
          Crab-eating macaque  ggaattctgca-ccccacagagctcagtcagcagagaaggctgcctgcccaggcat-ggggatgg
                       Baboon  ggaattctgca-ccccacagagctcagtcagcagagaaggctgcctgcccaggcat-ggggatgg
                 Green monkey  ggaattctgca-ccccacagagctcagtcagcagagaaggctgcctgcccaggcat-ggggatgg
             Proboscis monkey  ggaattctgca-ccccacagagcttggtcagcagagaaggctgcctgcccaggcat-ggggatgg
     Golden snub-nosed monkey  ggaattctgca-ccccacagagctcggtcagcagagaaggctgcctgcccaggcat-ggggatgg
                     Marmoset  ggaattctgca-ccccatagagctcagtcagcagagtaggctgcctgcccaggcatggggggtgg
              Squirrel monkey  ggaattctgca-ccccatagagctcagtcagcagagaaggctgcctgcccaggcat-gggggtgg
                     Bushbaby  ggaattctgca-ccccacagagcttggacaacagagaaggctgcctgcccaggcct-gaggatcg
                   Tree shrew  ggaatgttgcacccccgcagagcttggtcagcagggaaggctgtcagcccaggcgt-aggggtgg
                        Mouse  gaactgccgta-cctca--------------cacagaaggctgcctgccc-ggcgt--gggatgg
                          Dog  ggaat-ctgca-ccccacagagct--atcagca----------------------t-ggggattg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  =================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 23 of 231 in window, 32612301 - 32612821, 521 bps 
B D                     Human  cttcgctcttg-----------atggaa-------------------------tc--------------c
B D                     Chimp  cttcgctcttg-----------atggaa-------------------------tc--------------c
B D                    Bonobo  cttcgctcttg-----------atggaa-------------------------tc--------------c
B D                   Gorilla  ctttgttcttg-----------atggaa-------------------------tc--------------c
B D                 Orangutan  ctttgttgttg-----------atggaa-------------------------tc--------------c
B D                    Gibbon  ctttgttcttg-----------atggaa-------------------------tc--------------c
B D                    Rhesus  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D       Crab-eating macaque  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D                    Baboon  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D              Green monkey  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D          Proboscis monkey  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D  Golden snub-nosed monkey  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D                  Marmoset  ttttggtcttg-----------atgaaa-------------------------tc--------------c
B D           Squirrel monkey  ctttggtcttg-----------atggaa-------------------------tc--------------c
B D                  Bushbaby  ctttggccttg-----------acagaatgctcacatcagagtgaccagcttgtc--------------c
B D                Tree shrew  ctttggccttgaaatgctcacaataaaa-------------------------tc-------------at
B D                     Mouse  ctttggccttg-----------atagat-------------------------gg---------------
B D                       Dog  ctctggccttg-----------atagag-------------------------tgctctaatagagtggc
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  cagtttgcctgggaccatcacagtttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                        Chimp  cagtttgcctgggaccatcacagtttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                       Bonobo  cagtttgcctgggaccatcacagtttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                      Gorilla  cagtttgcctgggaccatcacagtttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                    Orangutan  cagtttgcctgggaccatcatagtttatacccctcagtctcaggcaggctggacagctggtcatcctaac
                       Gibbon  cagtttgcctgggaccatcacagtttatacccctcagtctcaggcatgctggacagctggtcaccctaac
                       Rhesus  cagtttgcctgggaccatcacag-ttatacccctcagtctcaggcaagctggacagctggtcatcctaac
          Crab-eating macaque  cagtttgcctgggaccatcacag-ttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                       Baboon  cagtttgcctgggaccatcacag-ttatacccctcagtctcaggcaagctggacagctggtcatcctaac
                 Green monkey  cagtttgcctgggaccatcacag-ttacacccctcagtctcaggcaagctggacagctggtcatcctaac
             Proboscis monkey  cagtttgcctgggactttcacag-ttacacccctcagtctcaggcaagctggacagctggtcatcctaac
     Golden snub-nosed monkey  cagtttgcctgggactatcacag-ttacacccctcagtctcaggcaagctggacagctggtcatcctaac
                     Marmoset  cagtttgcctgggaccgtcacgttttatagccctcagtctcaggcaagctgaacagctgctcatcccaac
              Squirrel monkey  cagtttgcctgggaccatcacattttatagccctcagtctcagacaagctggacagctggtcatcccaac
                     Bushbaby  tggtttctctgcgactgtcactgtttgtgctttccagtcccaggaaaacaggacagctggtcactctagc
                   Tree shrew  cagctcgcctgggactgtca----gtccacacctgagtcccaggcaaactggacagttggtcacactggc
                        Mouse  -----------------tcacagtctgcactcctcagggcctggcaaactgaata-ctggtcaccccagc
                          Dog  caacttg----------tcctagtttac-ccccttggcctcaggcaaactggacagtaagtcacccttgc
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  tcaggacctcccaagtgccacaagcccaggctttcgggtccagctacctggtctgggatccaatttccct
                        Chimp  tcaggacctcccaagtgccacaagcccaggctttggggtccagctacctggtctgggatccaatttccct
                       Bonobo  tcaggacctcccaagtgccacaagcccaggctttggggtccagctacctggtctgggatccaatttccct
                      Gorilla  taaggacctcccaagtgccacaatcccaggctttggggtccagctacctggtctgggatccaatttccct
                    Orangutan  ccaggacctcccaagtgccacaagcccaggctttggggtccagctacctggtctgggatccaatttccct
                       Gibbon  ccaggacctcccaagtgccacaagcccaggctttggggtccagctacctggtctgggatccaatttcctt
                       Rhesus  ccaggacctcccaagtgccacgaacccaggctttggggtccagctgcctggtctggcgtttagtttccct
          Crab-eating macaque  ccaggacctcccaagtgccacgaacccaggctttggggtccagctgcctggtctggggtttagtttccct
                       Baboon  ccaggacctcccaagtgccatgaacccagactttggggtccagctgcctggtctggggtctagtttccct
                 Green monkey  ccaggacctcccaagcgccacgaacccaggctttggggtccagctgcctggtctggggtctagtttccct
             Proboscis monkey  ccaggacctcccaagtgccacgaacccaggctttggggtccagctgcctggtctgggatttagtgtccct
     Golden snub-nosed monkey  ccaggacctcccaagtgccacgaacccaggctttggggtccagctgcctggtctgggatctagtgtccct
                     Marmoset  tcagaacctcccaagtgccacaagcccaggctttggggttccactgcctggtctgggatccagtttctct
              Squirrel monkey  tcagaacctcccaagcgccacaagcccaggcttcggagttccactgcctggtctgggatccagtttctct
                     Bushbaby  tccagacttccttggtgctacaaacccaggcttcaaagtcct-cttcttggtctgggatccagtttttct
                   Tree shrew  tcaggacctcctaggtgccacaaacccagg-------------ctggctggcctgggatccag-gtccct
                        Mouse  tcaggggctgc--------acaa----------ttgggtcataccgctccgtgtgggctccag-------
                          Dog  ccaggacctcctaggtgccagggacccaagctttggagtgcaattgcctggtctggaatccaggctccct
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  cccttccaaagactaggatcttggataagggagggctcctctgagcccctggt-cctccctcccccaccc
                        Chimp  cccttccaaagactaggatcttggataagggagggctcctctgagcccctggt-cctccctgccccaccc
                       Bonobo  cccttccaaagactaggatcttggataagggagggctcctctgagcccctggt-cctccctgccccaccc
                      Gorilla  cccttccaaagactaggatcttggataagggagggctcctctgagcccctggt-cctccctgccccaccc
                    Orangutan  cccttccaaagactaagatcatcgataagggagggctcctctgagcccctggt-cctccctgccccaccc
                       Gibbon  cccttccaaagactaggatcttagataagggagggctcctctgagcccctggt-cctccctgccccaccc
                       Rhesus  cccttccaaagactaggatcttggataagggaggactcctctgagcccctggt-cctccctgccccaccc
          Crab-eating macaque  cccttccaaagactaggatcttggataagggaggactcctctgagcccctggt-cctccctgccccaccc
                       Baboon  cccttccaaagactaagatcttggataagggaggactcctctgagcccctggt-cctccctgccccaccc
                 Green monkey  cccttccaaagactaggatcttggataagggaggactcctctgagcccctagt-cctccctgccccaccc
             Proboscis monkey  tccttccaaagactaggatcttggataagggaggactcctctgagcccctggt-cctccctgccccaccc
     Golden snub-nosed monkey  tccttccaaagactaggatcttggataagggaggactcctctgagcccctggt-cctccctgccccaccc
                     Marmoset  ccctttcaaggactaggatcttagataagggatggctccttcgagccccaggt-cctccct---------
              Squirrel monkey  cgctttcaaggac------cttagataagggagggctcctccga--------------------------
                     Bushbaby  ctattccaaggagtgggatcttggataagggagggcccctttgagccctgggt-tctccctgacctgcca
                   Tree shrew  cccttcctaggagagagatcttggaaaagggtgag-tcctctgagccccgggt-ctttcctaccccaccc
                        Mouse  ------------gcaagctctcag-tgtggtgtggctcc-------------------------------
                          Dog  tccttcctgggggtctgatcctgggaaaaggaaggcccttttgagctgggggtgcctcccagg--taccc
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  aaggacctgtgggccccgcctcaggctgccttaacaagttgaagtcagtaggcctatgccagaggagcca
                        Chimp  aaggacctgtgggccccgcctcaggctgccttaacaagttgaagtcagtaggcctatgccagaggagcca
                       Bonobo  aaggacctgtgggccccgcctcaggctgccttaacaagttgaagtcagtaggcctatgccagaggagcca
                      Gorilla  aaggacctgtgggccccgcctcaggctgccttaacaagttgaagtcagtaggcctatgccagaggagcca
                    Orangutan  aaggacctgtgtgccccgcctcaggctgccttaacaagttgaagtcagtaggcctatgccaggggagcca
                       Gibbon  aaggacctgtgggccccgcctcaggctgccttaacaagttgaagtcagtaggcctacaccaggggagcca
                       Rhesus  aaggacctgtgggccccaccccaggctgccttaacaacttgaagtcagtgggcctatgccaggggagcct
          Crab-eating macaque  aaggacctgtggaccccaccccaggctgccttaacaacttgaagtcagtgggcctatgccaggggagcct
                       Baboon  aaggacctgtgggccccaccccaggctgccttaacaacttgaagtcagtgggcctatgccaggggagcct
                 Green monkey  aaggacctgtgggccccaccccaggctgccttaacaacttgaagtcagtgggcctatgccaggggagcct
             Proboscis monkey  aaggacctgtgggccctgccccaggctgctttaacaagttgaagtcagtgggcctatgcc-ggggagcct
     Golden snub-nosed monkey  aaggacccgtgggccctgccccaggctgctttaacaagttgaagtcagtgggcctatgcc-ggggagcct
                     Marmoset  -----------------gccccaggctgccttaacaagttgaagtcaatagctctaggccaggggagcca
              Squirrel monkey  -----------------gccccaggctgccttaacaagttgaagtcaataggtctaggccaggggagcca
                     Bushbaby  agggattcatgggccccacctcaggctattttaacaggttagagtcagtaggtcca-gccaagggagcc-
                   Tree shrew  aaggacttgctagccct-ctccaggctgccttaacaggttggagtcaataggttcctgccaagggagcca
                        Mouse  ---------------------caggctttcttggtaggttggaaccgttctgtctaagctaggggagaca
                          Dog  agggacctgtggtcccc-ctccagactgctgtaacaggttggagtcactaggtctaccccag-ggagaca
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ccaggcctgcccagtt------ccttag-----ggaatgttggctgagcaaggaggcccaaggcctcctt
                        Chimp  ccaggcctgcccagtt------ccttag-----ggaatgttggctgagcaaggaggcccaaggcctcctt
                       Bonobo  ccaggcctgcccagtt------ccttag-----ggaatgttggctgagcaaggaggcccaaggcctcctt
                      Gorilla  ccaggcctgcccagtt------ccttag-----ggaatgttggctgagcaaggaggcccaaggcctcctt
                    Orangutan  ccaggcctgcccagtt------ccttag-----ggaatgttggctgagcaaggaggcccaagtcctcctt
                       Gibbon  ccagacctgcccagtt------ccttag-----ggaacattggctgagcaaggaggcccaaagcctcctt
                       Rhesus  ctaggccttcccagtt------cctcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
          Crab-eating macaque  ctaggccttcccagtt------cctcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
                       Baboon  ctaggcctgcccagtt------cctcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
                 Green monkey  ctaggcctgcccagtt------cctcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
             Proboscis monkey  ctaggcctgcccagtt------cttcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
     Golden snub-nosed monkey  ctaggcctgcccagtt------cctcag-----ggaatgttggctgagcaaggaggcccaaggtctcctt
                     Marmoset  ctgggcctgcccagtt------cctcag-----agaatggtggctgatcaaggaggcccaaggcctccgt
              Squirrel monkey  ccgggcctgccccgtt------cctcag-----agaatggtggctgatcaaggaggcccaaggcctcctt
                     Bushbaby  ctgggcatgcccagttcctgtacctcagggagtggagtgttggctgggcagggaggcccaaggcctcctt
                   Tree shrew  ccaggcctgcccagttcctgttcctcag-----ggaatgctgaccg-gcagggaggccc-aggcctcctt
                        Mouse  ccaggcctacccagtccctattcctcag-----ggactgtgggctggacaagaaggcccaagtcctcttt
                          Dog  ccaggcctgcctggttcctgt-cctcag-----ggaatgctggttgggttgggaggcccaagccctcctt
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  aaagagacaggcacaggctatagccaagctccacatatttaacaggcagctcctgtgagccatgaatcag
                        Chimp  aaagagacaggcacaggctatagccaagctccacatatttaacaggcagctcctgtgagccatgaatcag
                       Bonobo  aaagagacaggcacaggctatagccaagctccacatatttaacaggcagctcctgtgagccatgaatcag
                      Gorilla  aaagagacaggcacaggctatagccaagctccacatatttaacaggcagctcctgtgagccatgaatcag
                    Orangutan  aaagagacaggcacaggctatacgcaagctccacatatttaacaggcagctcctgtgagccatgaatcag
                       Gibbon  aaagaaacaggcacaggctatagccaagctccacatatttaacaggcagctcctatgagccatgaatcag
                       Rhesus  aaagagacaggcacaggctatagccaaactccacatatttaacaggcagctcctgtgagccatgaatcag
          Crab-eating macaque  aaagagacaggcacaggctatagccaaactccacatatttaacaggcagctcctgtgagccatgaatcag
                       Baboon  aaagagacaggcacaggctatagccaaactccacatatttaacaggcagctcctgtgagccgtgaatcag
                 Green monkey  aaagagacaggcacag------gccaaactccacatatttaacaggcagctcctgtgagccatgaatcag
             Proboscis monkey  aaagagacaggcacaggctatagccaaactccacatatttaacaggcagctcctgtgagccatgaatcag
     Golden snub-nosed monkey  aaagagacaggcacaggctatagccaaactccacatatttaacaggcagctcctgtgagccatgaatcag
                     Marmoset  aaagagacaggc------tatagccaagatccacatatttaacagacagctcctgtgagccatgaatcag
              Squirrel monkey  aaagagacaggt------tatagccaagctctgcatatttaacaggcagctcctgtgagccatgaatcag
                     Bushbaby  aaagagacagccacaggctacagccaggctctgcatatctcacaggctgctcctgtgagccatgaatcag
                   Tree shrew  aaagagacaggcacaggctactggcaaaccctgcatacttagcaggcagc-cctgagagccatgaatcag
                        Mouse  aaagggacagacttcagccacagcccaactccacacactgaa---ggaggtgctgtggg-catgaatcag
                          Dog  aaagagacaggcgcaggccatagccaagctctgcatatttaacaggcagctcttgtgagccatgaatcag
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  catcccagg-g-c-cctttggacaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                        Chimp  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                       Bonobo  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                      Gorilla  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                    Orangutan  catcccagg-g-c-cctttggacaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                       Gibbon  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctattgggg
                       Rhesus  catcccagg-g---cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
          Crab-eating macaque  catcccagg-g---cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
                       Baboon  catcccagg-g---cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
                 Green monkey  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
             Proboscis monkey  catcccagg-g-c-ccttcgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
     Golden snub-nosed monkey  catcccagg-g-c-cctttgggcaacacagaagcattttcccagccaggtctctcttgcagctgttgggg
                     Marmoset  caacccagg-g-ctcacttgggcagcacagaagcattttcccagccaggtctctcttgcagctgttgggg
              Squirrel monkey  caacccagg-g-ctcatttgggcagcacagaaacattttcccagccaggtctctgttgcagctgttgggg
                     Bushbaby  catcccgggag-c-cctttgggcagcacagaagcattttcccagctaggcccctcttgcagcca------
                   Tree shrew  catcccagg-ggc-cctttgggcagcaaagaagcgctttcccagccgggcaactcctgcagctg------
                        Mouse  catcccagg-g-c-ccttagaccattacagatgcatgtctccaggcc-gtcccttttgtagtcatgggga
                          Dog  catcccagg-ggc-cttctgggcatcacagaagcattttcctagtcaggcccctcctgcagccattgggg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  tga--gggtgggggtgggacaaggaggc
                        Chimp  tga--gtgtgggggtgggacaagtaggc
                       Bonobo  tga--gtgtgggggtgggacaagtaggc
                      Gorilla  tga--gggtgggggtgggacaaggaggc
                    Orangutan  tga--gggtgggggtgggacaaggaggc
                       Gibbon  tga--gggtgggggtgggacaaggaggc
                       Rhesus  tga--gggtgggggtgggacaaggaggc
          Crab-eating macaque  tga--gggtgggggtgggacaaggaggc
                       Baboon  tga--gggtaggggtgggacaaggaggc
                 Green monkey  tga--gggtgggggtgggacaaggaggc
             Proboscis monkey  tga--gggtgggggtgggacaaggaggc
     Golden snub-nosed monkey  tga--gggtgggggtgggacaaggaggc
                     Marmoset  tga--gggtaggggtgggacaaggaggc
              Squirrel monkey  tga--gggtatgggtggaacaaggaggt
                     Bushbaby  tgg--ggggtggggtgggacaagacagt
                   Tree shrew  tga--gggtgggt---------------
                        Mouse  tgggtgggtagggaccagacagaattat
                          Dog  tg---ggtaaggggtgggacaaggagg-
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ============================

Alignment block 24 of 231 in window, 32612822 - 32613086, 265 bps 
B D                     Human  ctgcgagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                     Chimp  ctgcgagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                    Bonobo  ctgcgagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                   Gorilla  ctgtgagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                 Orangutan  ctgcaagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                    Gibbon  ctgcaagaaggggcc---tgggcacaggaaggctgctcctctgccagctgcagggcttccttggggatct
B D                    Rhesus  ttgcaagaaggggcc---tgggcacaagaaggccgctcctctgccagctgcagggcttccttggggatct
B D       Crab-eating macaque  ttgcaagaaggggcc---tggtcacaagaaggccactcctctgccagctgcagggcttccttggggatct
B D                    Baboon  ttgcaagaaggggcc---tgggcacaagaaggccactcctctgccagctgcagggcttccttggggatct
B D              Green monkey  ttgcaagaaggggcc---tgggcacaagaaggctgctcctctgccagctgcagggcttccttggggatct
B D          Proboscis monkey  ttgcaagaaggggcc---tgggcacaagaaagctgctcctctgccagctgcagggcttccttggggatct
B D  Golden snub-nosed monkey  ttgcaagaaggggcc---tgggcacaagaaagctgctcctctgccagctgcagggcttccttggggatct
B D                  Marmoset  ctgcaagaaggggcc---tgggtgcaggaaggctgctccccaccaagctgcagggcttccctggagatct
B D           Squirrel monkey  ctgcaagaaggggcc---cgggtgcaggaaggctgctccccgcccagctgcagggcttccctggagatct
B D                   Tarsier  ctgcaaggaggtgcc---tgagctgaggaaggctgctcccctccaagctgtagggccttcctgcagaagt
B D                  Bushbaby  ctgtaaggagggggcctgtgggcccaggatgtctgctcctctctcaactgcagggcctccttggggatct
B D                Tree shrew  ctgcaaagagggtcc-tgtgggcccaggaaggtcgc---------agctgcagggccttgttgga-atcc
B D                     Mouse  ctgtaaggaaggact---gatgccca-----------------------gcaggacctccttggagatct
B D                       Dog  ctgctaggaggggcc-tgtgggcccaggaaggttacttccctcccagctgcggggcctctttagcaatta
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ataggtgccaggcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                        Chimp  ataggtgccaggcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                       Bonobo  ataggtgccaggcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                      Gorilla  ataggtgccaggcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                    Orangutan  ataggtgccaggcacagttaccaagacacatgcagaaagggctacagtgggaggcatgaggcatctctgg
                       Gibbon  ataggtgccaggcatagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                       Rhesus  acaggtgccacgcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctttctgg
          Crab-eating macaque  acaggtgccacgcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                       Baboon  acaggtgccacgcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                 Green monkey  acaggtgccacacacagttaccaagacacatagagaaagggctgcagtgggaggcatgaggcctctctgg
             Proboscis monkey  ataggtgccacgcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
     Golden snub-nosed monkey  ataggtgccacgcacagttaccaagacacatggagaaagggctgcagtgggaggcatgaggcctctctgg
                     Marmoset  acagg-------------tatcaggacacatggagaaagggctgcagtgggaggtatgaggcccctc---
              Squirrel monkey  acagg-------------aaccaagacacatggagaaagggctgcggtgggaggtagtaggcccctct-g
                      Tarsier  acgcgttccaggcagggtttccaagacacctgcagaaagggctccagtggaaggcacaggggccctctgg
                     Bushbaby  acaggtccctggctgggcttccaagactcgcgcaaaaagggctgcagtaggaggtatggtcatcctctgg
                   Tree shrew  cctggtctcagacaaggcttccaaaacacacacagaaag---cgtagtggggtgcatgggacc-ctctgg
                        Mouse  gcaggaatcaggagtagctttc-tgatacttgccaaaaggcctgcagtagaagattctagg-ctctttta
                          Dog  acaggtcccaggcaggacttctaggagacctgt-gaaggggctgtggtgggaggcatgggggctctctgg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ctccaggcttgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagctttcccaggcctta
                        Chimp  ttccaggcttgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagcttccccaggcctta
                       Bonobo  ttccaggcttgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagcttccccaggcctta
                      Gorilla  ttccaggcctgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagcttccccaggcctta
                    Orangutan  ttccaggcctgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagcttccccaggcctta
                       Gibbon  ttccaggcctgatcctcctgctgcctagtcatgtaatctcagatgggcccctgagcttccccag------
                       Rhesus  ttccaggcctgacactcttgctgcctagtcatgtaatcttagacgggcccctgagcttccccaggcctta
          Crab-eating macaque  ttccaggcctgacgctcttgctgcctagtcatgtaatcttagatgggcccctgagcttccccaggcctta
                       Baboon  ttccaggcctgatgctcttgctgcctagtcatgtaatcttagatgggcccctgagcttccccaggcctta
                 Green monkey  ttccaggcctgatcctcttgctgcctagtcatgtaatcttagatgggtccctgagcttccccaggcctta
             Proboscis monkey  ttccaggcctgatcctcttgctgcctagtcatgtaatcttagatgggcccctgagcttccccaggcctta
     Golden snub-nosed monkey  ttccaggcctgatcctcctgctgcctagtcatgtaatcttagatgggcccctgagcttccccaggcctta
                     Marmoset  ttccaggcctgatccta---ctgcctagtcatgtaatct-gagtgag-ccctgggcttccccaggcctca
              Squirrel monkey  ttccaggcctgatccta------------------------gatgagcccctgagcttccccaggcctca
                      Tarsier  a-ccaagtcccatcctc---ctgcctggccatgtgatctcagatggggctgtgagcttccccaggccttg
                     Bushbaby  ctccaagccaaatcatcttgctgcctggccatgtgatctcagatggggccctgagcttccccaggcctca
                   Tree shrew  ttccaagcgctgtcctcctgctgc-------------ctcagatggggtcctgagtttctacgggcccca
                        Mouse  tgccagacatgattcttct-----------------------attgagccttgagccgatttgggtc---
                          Dog  ttccaggccctatcctcctgcttcttagccgtgtaaccatggacggggacctgagcttctcctggccacg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ctgtccctggaacaatggcatctggcctc-------tgcaact------------gctaa--------gc
                        Chimp  ctgtccctggaacaatggcatctggcctc-------tgcaact------------gctaa--------gc
                       Bonobo  ctgtccctggaacaatggcatctggcctc-------tgcaact------------gctaa--------gc
                      Gorilla  ctgtccctggaacaatggcatctggcctc-------tgcaact------------gctaa--------gc
                    Orangutan  gtgtccttggaacaatggcatctggcctc-------tgcaact------------gctaa--------gc
                       Gibbon  -tgtccctggaacaatggtatctggcctc-------tgcaact------------gctaa--------gc
                       Rhesus  gtgtccctggaacaatggcatctgccttc-------tgcaaca------------gctaa--------gg
          Crab-eating macaque  gtgtccctggaacaatggcatctgccttc-------tgcaacagctaaggcccctgctaa--------gg
                       Baboon  gtgtccctggaacaatggcatctgccttc-------tgcaaca------------gctaa--------gg
                 Green monkey  gtgtccctggaacaatggcacctgccttc-------tgcaaca------------gctaa--------gg
             Proboscis monkey  gtgtccctggaacaatggcatctgccttc-------tgcaaca------------gctaa--------gg
     Golden snub-nosed monkey  gtgtccctggaacaatggcatctgccttc-------tgcaaca------------gctaa--------gg
                     Marmoset  gtgttcctggaaccatggcatctggcgcc-------tgccacc------------tctaa--------gg
              Squirrel monkey  gtgttcctggaaccatggcatctggcccc-------tgccacc------------tctga--------gg
                      Tarsier  gtgtccctgaaacaatggcatctagcctc-------tgtgact------------tctaa--------gg
                     Bushbaby  gtgtccctggattaatggcatctggtctc-------tgtgacc------------tctaa--------gg
                   Tree shrew  gtgtgcctgaaacaatgatgtctggcct--------tgtgacc------------tctca--------ga
                        Mouse  ----acttggggtgacgg--tccaacctcagtgaagtgtgaat------------gccaaccctaatgtg
                          Dog  atgctcctggaacaagggcatcgggcctc-------tg--acc------------tctct--------gg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ccccttctagccttg
                        Chimp  ccccttctagccttg
                       Bonobo  ccccttctagccttg
                      Gorilla  ccccttctaaccttg
                    Orangutan  ccccttctagtcttg
                       Gibbon  ccccttctagccttg
                       Rhesus  ccccttctagccttg
          Crab-eating macaque  ccccttctagccttg
                       Baboon  ccccttctagccttg
                 Green monkey  ccccttctagccctg
             Proboscis monkey  ccccttctagccttg
     Golden snub-nosed monkey  ccccttctagccttg
                     Marmoset  ccccttctagccttg
              Squirrel monkey  ccccctccagccttg
                      Tarsier  tcccatctggccttg
                     Bushbaby  cctttttcagccttg
                   Tree shrew  ccccttctagccttg
                        Mouse  ctccttatgcccctg
                          Dog  ccccttccagccttg
                  Mouse lemur  NNNNNNNNNNNNNNN

Inserts between block 24 and 25 in window
B D                    Mouse 122bp

Alignment block 25 of 231 in window, 32613087 - 32613161, 75 bps 
B D                     Human  ctaagatccactgactgaaaccagtcttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                     Chimp  ctaagatccactgactgaaaccagtcttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                    Bonobo  ctaagatccactgactgaaaccagtcttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                   Gorilla  ctaagatccactgactgaaaccagtcttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                 Orangutan  ctaagatccacggactgaaaccagtcttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                    Gibbon  ctaagatccactgactgaaaccagtcttccagatacccagtgttagctgg-------ctgaatcctagg-
B D                    Rhesus  ctaagatccactgactgaaactggacttccagattcccagtgttagctgg-------ctgaatcctagg-
B D       Crab-eating macaque  ctaagatccactgactgaaactggacttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                    Baboon  ctaagatccactgactgaaactggacttccagattcccagtgttagctgg-------ctgaatcctagg-
B D              Green monkey  ctaagatccactgactgaaactggacttccagattcccagtgttagctgg-------ctgaatcctagg-
B D          Proboscis monkey  ctaagatccgctgactgaaactggacttccacattcccagtgttagctgg-------ctgaatcctagg-
B D  Golden snub-nosed monkey  ctaagatccactgactgaaactggacttccagattcccagtgttagctgg-------ctgaatcctagg-
B D                  Marmoset  ctaagatccactgactgaaactggacttccagattcccagtgacagctgg-------ccgaatcctagg-
B D           Squirrel monkey  ttaagatccgctgactgaaactggacttccagattcccagtgacagctgg-------ctgaatcctagg-
B D                   Tarsier  ctaaactccactaactaaagccagacttccagattcccaggagtagctgt-------ctgaaacctggc-
B D                  Bushbaby  ctaagatcaactaactgaaactggactttctgattcccagtgtcagctggccagttcctggagcctagga
B D                Tree shrew  ctaagctccatgaactgacac-------------------tgatagctgg-------ctgaatcctggg-
B D                       Dog  ctaagattctctaactgaaaccagacttccggattcccagtgagagttgg-------atgaaggctggg-
B D                     Mouse  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -------------------ccttct----ggtccct
                        Chimp  -------------------ccttct----ggtccct
                       Bonobo  -------------------ccttct----ggtccct
                      Gorilla  -------------------ccttct----ggtccct
                    Orangutan  -------------------ccttct----ggtccct
                       Gibbon  -------------------ccttct----ggtccct
                       Rhesus  -------------------ccttct----ggtccct
          Crab-eating macaque  -------------------ccttct----ggtccct
                       Baboon  -------------------ccttct----ggtccct
                 Green monkey  -------------------ccttct----ggttcct
             Proboscis monkey  -------------------ccttct----ggtccct
     Golden snub-nosed monkey  -------------------ccttct----ggtccct
                     Marmoset  -------------------ccttcta---ggcccct
              Squirrel monkey  -------------------cctttta---ggcccct
                      Tarsier  -------------------ccttctctctggtcact
                     Bushbaby  attctgcaccagaattcccacttct----ggtcctt
                   Tree shrew  -------------------ccttga----ggaccct
                          Dog  -------------------ctttct----gatac--
                        Mouse  ====================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 26 of 231 in window, 32613162 - 32613342, 181 bps 
B D                     Human  gggtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                     Chimp  gggtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                    Bonobo  gggtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                   Gorilla  gggtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                 Orangutan  gggtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                    Gibbon  gcgtctcaacactca-----------------gcctgat--a--gagtag--------------------
B D                    Rhesus  gggtctcaaccctca-----------------gcctgat--a--gagtag--------------------
B D       Crab-eating macaque  gggtctcaaccctca-----------------gcctgat--a--gagtag--------------------
B D                    Baboon  gggtctcaaccctca-----------------gcctgat--a--gagtag--------------------
B D              Green monkey  gggtctcaaccctca-----------------gcctgat--a--gagtag--------------------
B D          Proboscis monkey  gggtctcaaccctca-----------------gcctgat--a--gagtag--------------------
B D  Golden snub-nosed monkey  gggtctcaaccctca-----------------gcctgat--a--aagtag--------------------
B D                  Marmoset  gggtctcaacacttg-----------------gcctgat--a--gagtagcagagaagtctgctttctac
B D           Squirrel monkey  gggtctcaacactca-----------------gcgtgtt--a--gagtag--------------------
B D                   Tarsier  gtgtctcaacagtca-----------------gcctgatgca--gggtag--------------------
B D                  Bushbaby  gagtcttaatactta-----------------gcccaataca--gggtag--------------------
B D                Tree shrew  gggtctcaatgctca-----------------acctgat--acccggttg--------------------
B D                     Mouse  agttcttagcacccacacgacagctcataactgcctgta--a--ctctag--------------------
B D                       Dog  -----------ctca-----------------gtctgataca--cagtgg--------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
                        Chimp  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
                       Bonobo  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
                      Gorilla  -atgctgagg----aatgcacag----------------------tagaaa----gatggctggatggat
                    Orangutan  -atgctgagg----aatgcacag----------------------tagaaagatggatggatggatggat
                       Gibbon  -atgctgagg----aatgtacag----------------------tagaaa----aatggatggatggat
                       Rhesus  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
          Crab-eating macaque  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatgcat
                       Baboon  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
                 Green monkey  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
             Proboscis monkey  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
     Golden snub-nosed monkey  -atgctgagg----aatgcacag----------------------tagaaa----gatggatggatggat
                     Marmoset  tgtgctgagg----aatgcacag----------------------tagaga----gatggatgggtggat
              Squirrel monkey  -atgctgagg----aatgcacag----------------------tagaaa----ggtggatgggtggat
                      Tarsier  -gtggcgagg----aaggcagag----------------------tagaag----gatgaatggatggat
                     Bushbaby  -gtggtgaga----aatgcagaa----------------------tagaaa----gatgagcggacggat
                   Tree shrew  -gtgccaagg----aacacaggggaggc-----------------taaagg----aatgcgagagtggat
                        Mouse  -ttccagaggacccaatgccctgggcattctacacatttggtacacagata----tacatgtaggcacat
                          Dog  -gtgctgaga----agcacagaa----------------------tagaaa----gatggatgggtg---
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gaatgggagggtggatgg----------------------------gaggatggatggatagatgaatgg
                        Chimp  gaatgggagggtggatgg----------------------------gaggatggatggatagatgaatgg
                       Bonobo  gaatggga-ggtggatgg----------------------------gaggatggatggatagatgaatgg
                      Gorilla  gaatgggagggtggatgg----------------------------gaggatggatggatagatgaatgg
                    Orangutan  ggatgggagggtggatgg----------------------------gaggatggatggatagatgaatgg
                       Gibbon  gaatgggagggtggatgg----------------------------gaggatggatggatagatgaatgg
                       Rhesus  gaatgggaggatggatggatagatgaatgaatgggtagatggatgagaggctggatggatagatgaatgg
          Crab-eating macaque  gaatgggaggatggatggatagatgaatgaatgggtagatggatgagaggctggatggatagatgaatgg
                       Baboon  gaatgggaggatggatggatagatgaatgaatggatagatggatgagaggctggatggatagatgaatgg
                 Green monkey  gaatgggaggatggatggatagatgcatgaatgggtagatggatgagaggctggatggatagatgaatgg
             Proboscis monkey  gaatgggaggatggatggatagatgaatgaatgggtagatggatgagaggctggatggatagatgaatgg
     Golden snub-nosed monkey  gaatgggaggatggatggatagatgaatgaatgggtagatggatgagaggttggatggatagatgagtgg
                     Marmoset  gaatgggagggtggatgg----------------------------gaggatggagggatagatgaatga
              Squirrel monkey  gaacgggagggtggttgg----------------------------gaggatggagggatagacgaatga
                      Tarsier  aagagggtggagggaggg--------------------gtggaagagaggttaaataggagggtggatgg
                     Bushbaby  ----gggagaatggatgg----------------------------atagatggatgaata---gaatga
                   Tree shrew  ggatgggcggatggacagatg-------------------------gggagtgggagggtggatggatgg
                        Mouse  cacccatatagtagatag----------------------------atacatacatacatatatagacac
                          Dog  --atggatgtgtgaatgg----------------------------gtgaatggatggatgaatggatgg
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  atgggtgggtggatgaat-caatggatggatggatgaatgaataaatggacagatagatgcatgcatgga
                        Chimp  atgggtgggtggatgaat-caatggatggatggatgaatgaataaatggacggatagatgcatgcatgga
                       Bonobo  atgggtgggtggatgaat-caatggatggatggatgaatgaataaatggacggatagatgcatgcatgga
                      Gorilla  atgggtgggtggatgaat-caatggatggatggatgaatgaataaatggatggatagatgcatgcatgga
                    Orangutan  atgggtgggtggatgaat-caatggatggatggatgaatgaataaataaatggatggatagaggcatgga
                       Gibbon  atgggtgggtggatgaat-caatggatggatggattaatgaataaacaaatggatggatagatgcatgga
                       Rhesus  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgcatggataga
          Crab-eating macaque  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgcatggataga
                       Baboon  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgcatggataga
                 Green monkey  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgcatggataga
             Proboscis monkey  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgcatggatgga
     Golden snub-nosed monkey  atgggtgggtggatgaat-caatggatggatgaatgaataaataaatggatggatagatgc---------
                     Marmoset  atgggtagatggatgaga-ggctagatggatagatgaatggatgggtgggtgtataaatc----------
              Squirrel monkey  atgggtagctggatgaga-ggctagatggatagatgaatggatgggtgggtggataattcaatgaataga
                      Tarsier  atggatggatagatggat-ggagggatggg-ggatgggagattaggtgggaaggtggatgga-----ggg
                     Bushbaby  gtagatggatggatgaatagaatgagtggatggatggatggataggaggacgtaaagatgggaggatgga
                   Tree shrew  gaggttgggtgga------gggtgggtggatggatcggtgagtgagaggaaggatg--------------
                        Mouse  atagatagatacatagat-acatagatacatagatagatacatagatggatacatagatggatacataga
                          Dog  atgggcaggtggatggat------gatggttggatgagtgggtagttggatggatggatg-atggataga
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  tg
                        Chimp  tg
                       Bonobo  tg
                      Gorilla  tg
                    Orangutan  tg
                       Gibbon  tg
                       Rhesus  tg
          Crab-eating macaque  tg
                       Baboon  tg
                 Green monkey  tg
             Proboscis monkey  tg
     Golden snub-nosed monkey  --
                     Marmoset  --
              Squirrel monkey  tg
                      Tarsier  tg
                     Bushbaby  ta
                   Tree shrew  --
                        Mouse  tg
                          Dog  tg
                  Mouse lemur  NN

Alignment block 27 of 231 in window, 32613343 - 32613369, 27 bps 
B D                     Human  gatggatggatggatggatggatgg----at
B D                     Chimp  gatggatggatggatggatggatgg----at
B D                    Bonobo  gatggatggatggatggatggatggatgaat
B D                   Gorilla  gatggatggatggatgggaggatgg----gt
B D                 Orangutan  gatggatggatgg----------------at
B D                    Gibbon  gacggatggatggatggatggatgg----at
B D                    Rhesus  gatggatagatggatggatggatgg----at
B D       Crab-eating macaque  gatggatagatggatggatggatgg----at
B D                    Baboon  gatggatagatggatggatggatgg----at
B D              Green monkey  gatggatagatggatggatggattg----gt
B D          Proboscis monkey  gatggatggatggatggatggatgg----at
B D  Golden snub-nosed monkey  -atggatggatggatggatggatgg----ga
B D                  Marmoset  aatggatagatgaatcaatggatga----at
B D                   Tarsier  gacgaatgggtggatggataggagg----ct
B D                  Bushbaby  gatggatggatgaaaggatgggtga----at
B D                Tree shrew  gttggatagacggaaggataga--g----at
B D                     Mouse  gacggacagatgtattggtagatag----at
B D                       Dog  gatggataagtggattcatggatga----ac
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 27 and 28 in window
B D                    Mouse 1451bp

Alignment block 28 of 231 in window, 32613370 - 32613379, 10 bps 
B D                     Human  g-------gatgggagg
B D                     Chimp  g-------gatgggagg
B D                    Bonobo  g-------gatgggagg
B D                   Gorilla  g-------gat----gg
B D                 Orangutan  g-------gatgggagg
B D                    Gibbon  g-------gatggatgg
B D                    Rhesus  g-------gatggatag
B D       Crab-eating macaque  g-------gatggatgg
B D                    Baboon  g-------gatggatgg
B D              Green monkey  g-------gatggatgg
B D          Proboscis monkey  g-------gatggatgg
B D  Golden snub-nosed monkey  g-------gatggatgg
B D                  Marmoset  c-------aatggatgg
B D                   Tarsier  gtgcaggagatgggtgg
B D                  Bushbaby  g-------catgggagg
B D                Tree shrew  a-------tacagaagg
B D                       Dog  -------agatggagag
B D                     Mouse  =================
B D           Squirrel monkey  NNNNNNNNNNNNNNNNN
B D               Mouse lemur  NNNNNNNNNNNNNNNNN

Alignment block 29 of 231 in window, 32613380 - 32613382, 3 bps 
B D                     Human  atg
B D                     Chimp  atg
B D                    Bonobo  cta
B D                   Gorilla  atg
B D                 Orangutan  atg
B D                    Gibbon  atg
B D                    Rhesus  atg
B D       Crab-eating macaque  atg
B D                    Baboon  atg
B D              Green monkey  atg
B D          Proboscis monkey  atg
B D  Golden snub-nosed monkey  atg
B D                  Marmoset  atg
B D                   Tarsier  atg
B D                  Bushbaby  atg
B D                       Dog  agg
B D                     Mouse  ===
B D           Squirrel monkey  NNN
B D                Tree shrew  ---
B D               Mouse lemur  NNN

Alignment block 30 of 231 in window, 32613383 - 32613398, 16 bps 
B D                     Human  ggt----------------------------------------------------gggtggatggatg
B D                     Chimp  ggt----------------------------------------------------ggatggatggatg
B D                    Bonobo  gat----------------------------------------------------ggattaatgggtg
B D                   Gorilla  gat----------------------------------------------------ggatggatggatg
B D                 Orangutan  ggt----------------------------------------------------gggtggatggatg
B D                    Gibbon  gat----------------------------------------------------gga---atggatg
B D                    Rhesus  gatagatgggatgatgggtggatggatggatggatggatggatggatggatggatggatggatggatg
B D       Crab-eating macaque  gat-----------------------------------------------------------------
B D                    Baboon  gat--------ggatagatggatagatgggatgatgggtggatggatggatggatggatggatggatg
B D              Green monkey  gat--------------------------------------------agatggatggatgggaggatg
B D          Proboscis monkey  gat----------------------------------------------------gggaggctggctg
B D  Golden snub-nosed monkey  gat----------------------------------------------------gggaggctggctg
B D                  Marmoset  gat----------------------------------------------------ggatggacaaatg
B D                   Tarsier  aat----------------------------------------------------gggtgggtgggag
B D                  Bushbaby  gag----------------------------------------------------ggatggatgggag
B D                     Mouse  ====================================================================
B D                       Dog  --------------------------------------------------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  --------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 30 and 31 in window
B D                   Rhesus 4bp
B D                   Baboon 4bp
B D             Green monkey 4bp
B D         Proboscis monkey 4bp
B D Golden snub-nosed monkey 4bp

Alignment block 31 of 231 in window, 32613399 - 32613475, 77 bps 
B D                     Human  gatggatggatg----g------------atggatggatggatggatgagaggct---------------
B D                     Chimp  gatggatggatg----gatggatggatgaatggatggatggatggatgagaggct---------------
B D                    Bonobo  aatgtctggatg----a------------atggacaaatggatggatgagaggctgactggctggccagc
B D                   Gorilla  gatggatggatg----g---------------------tggatggatgagaggct---------------
B D                 Orangutan  gatggatggatg----g------------------------atggatgagaggct---------------
B D                    Rhesus  gatggatggatg----gatgagagactggctggctggatggatgaatgagtggct---------------
B D       Crab-eating macaque  -----------g----gatgagagactggctggctggatggatgaatgagtggct---------------
B D                    Baboon  gatggatggttggatggatgagagactggctggctggctggatgaatgagtggct---------------
B D              Green monkey  gatggatggatg----gatggg----tggatggatggatggatggatgggaggat---------------
B D          Proboscis monkey  gatggatggatg----aatgagaggctgcctggctggctggatgaatgagtggct---------------
B D  Golden snub-nosed monkey  gatggatggatg----aatgagaggctgcctggctggctggatgaatgagtggct---------------
B D                  Marmoset  --------------------------------aactgatagatgggaggatggat---------------
B D                   Tarsier  gacggagggatg----g------------gagaatggatggacggatgagaggctaaatagg--------
B D                  Bushbaby  gatggacagttg----g---gagggatgtctaggaggatgga-ggatgagagaat---------------
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -----ggctggatggatgggtggatgaatgaatgaatggatgg
                        Chimp  -----ggctggatggatgggtggatgaatgaatgaatggatgg
                       Bonobo  tggtaggctggctggatgggaaggtggatgggtgaatggatgg
                      Gorilla  -----ggctggatggatgggtggatgaatgaatgaatggatgg
                    Orangutan  -----ggctggatggatgggtggatgaatgaacgaatggatgg
                       Rhesus  -----ggctggatggatgggtggatggatgaatgaatggatga
          Crab-eating macaque  -----ggctggctggatgggtggatggatgaatgaatggatga
                       Baboon  -----ggctggatggatgggtggatggatgaatgaatggatga
                 Green monkey  -----ggatggatggatggatggatggatggatggatggatgg
             Proboscis monkey  -----ggctggctagatgggtggatggatgaatgaatggatga
     Golden snub-nosed monkey  -----agctggctagatgggtggatagatgaatgaatggatga
                     Marmoset  -----ggatggatagatgggaggatggatggatggatggatgg
                      Tarsier  -----aggtaggtggacgggaggatgaacgggaggatggatgg
                     Bushbaby  -----ggatagatggttgggagggtaaatgggaggatagaggg
                        Mouse  ===========================================
                          Dog  -------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  -------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 32 of 231 in window, 32613476 - 32613607, 132 bps 
B D                     Human  acaggagggtgggtggatggatggatga----------------atggatag---atggatggatgggag
B D                     Chimp  acaggagggtgggtggatggatggatga----atggatagatggatggatag---atggatggatgggag
B D                   Gorilla  acaggagggtgggtggatggatggatga----atggatagatggatggatag---atggatggatgggag
B D                 Orangutan  acaggagggtgggtggatggatggatggatgaatggatagatggatggatag---atggatggatgggag
B D                    Rhesus  acaggagggtgggcagatggatggatga----atggatagatggatggatga---atggatagatggatg
B D       Crab-eating macaque  acaggagggtgggcagatggatggatga----atggatagatggatggatga---atggatagatggatg
B D                    Baboon  acaggagggtaggcagatggatggatga----atggatagatggatggatga---atggatagatggatg
B D              Green monkey  atgagaggctgactggctagatagatga----atgagtgactggctggatgg---atgggtggatggatg
B D          Proboscis monkey  acaggagggtgggcagatggatggataa----atggatagatggatggatgatagatggataggtggatg
B D  Golden snub-nosed monkey  acaggagggtgggcagatggatggatga----atggatagatggatggatgatagatggataggtggatg
B D                  Marmoset  acaggaggctagct-gatggaaggagga-------------tggatgggttg---atggatggatggggg
B D                   Tarsier  atgggagattagatgggcaagtggatga----a---------gggtggatgg---atggatggagaagag
B D                  Bushbaby  acaaactagaagatgagtgaatggatgg----atagataaaaggttgagtag---atggatggataggag
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  ----------------------------------------------------------------------
B D                    Bonobo  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gct----------------ggatgaat---ggatagatggatggatagatggatggatggga--------
                        Chimp  gct----------------ggatgaat---ggatagatggatggatagatggatggatggga--------
                      Gorilla  gct----------------ggatgaat---ggatagatggatggatagatggatggatggga--------
                    Orangutan  gct----------------ggatgaat---ggatagatggatggatcgatggatggatggga--------
                       Rhesus  gat--------------------------------gatagatggataggtggatggatggga--------
          Crab-eating macaque  gat--------------------------------gatagatggataggtggatggatggga--------
                       Baboon  gat--------------------------------gatagatggataggtggatggatggga--------
                 Green monkey  aat--------------------------------ga-----------atggatgaacagga--------
             Proboscis monkey  gatgggaggctggatgaatggatggat---ggatagatagatggatggatggatagatgggaggctggct
     Golden snub-nosed monkey  gatgggaggctggatgaatggatggat---ggatagatagatggatggatggatagatgggaggctggct
                     Marmoset  a------------------gaatgaatgggggatggatggatggacaaatgaatggatggga--------
                      Tarsier  gct----------------gtgtagga--------gatggatggatggatggatggatggga--------
                     Bushbaby  gat----------------ggagggat--------ga-agggggataaatgggaggatggag--------
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ----------------------------------------g--------------------gctggatga
                        Chimp  ----------------------------------------g--------------------gctggatga
                      Gorilla  ----------------------------------------g--------------------gctggatga
                    Orangutan  ----------------------------------------g--------------------gctggatga
                       Rhesus  ----------------------------------------g--------------------gctggatga
          Crab-eating macaque  ----------------------------------------g--------------------gctggatga
                       Baboon  ----------------------------------------g--------------------gctggatga
                 Green monkey  ----------------------------------------g--------------------ggtgggagg
             Proboscis monkey  ggctggatggatgaatgaca--------------------ggctggctggctagatgggtggatggatga
     Golden snub-nosed monkey  ggctggatggatgaatgacaggctggctggctagatgggtg--------------------gatggatga
                     Marmoset  ----------------------------------------g--------------------gctagatgg
                      Tarsier  ----------------------------------------g------------------------gacga
                     Bushbaby  ----------------------------------------g--------------------gatggatgg
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  atggatggatgga------------tagatggatggatgg
                        Chimp  atggatggatgga------------tagatggatggatgg
                      Gorilla  atggatggatgga------------tagatggatggatgg
                    Orangutan  atggatggatgga------------tagatggatggatgg
                       Rhesus  atggatggatgga------------tggatggatggatgg
          Crab-eating macaque  atggatggatgga------------tggatggatggatgg
                       Baboon  atggatggatgga------------tggatggatgggagg
                 Green monkey  atgggtggatgga------------tggatggatggatgg
             Proboscis monkey  atgaatggatggacaagagggtgggtggatggatggatgg
     Golden snub-nosed monkey  atgaatggatggacaagagggtgggtggatggatggatgg
                     Marmoset  atgaatgggtgaa------------tggttggataaatgg
                      Tarsier  atggatgcacagg------------aggatggataggagg
                     Bushbaby  gaggatgggcgga------------tagatggatgggcga
                        Mouse  ========================================
                          Dog  ----------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------
                       Bonobo  ----------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 32 and 33 in window
B D                   Rhesus 179bp
B D      Crab-eating macaque 20bp
B D                   Baboon 68bp
B D         Proboscis monkey 31bp
B D Golden snub-nosed monkey 31bp

Alignment block 33 of 231 in window, 32613608 - 32613615, 8 bps 
B D                     Human  acagatgg
B D                     Chimp  acagatgg
B D                   Gorilla  acagatgg
B D                 Orangutan  acagatgg
B D                    Rhesus  acagatgg
B D       Crab-eating macaque  atgaatga
B D                    Baboon  ----acaa
B D              Green monkey  atggatgg
B D          Proboscis monkey  gtggatgg
B D  Golden snub-nosed monkey  gtggatgg
B D                  Marmoset  acaaatag
B D                   Tarsier  gtaggtgg
B D                  Bushbaby  atagaggg
B D                     Mouse  ========
B D                       Dog  --------
B D           Squirrel monkey  NNNNNNNN
B D                Tree shrew  --------
B D                    Bonobo  --------
B D               Mouse lemur  NNNNNNNN
B D                    Gibbon  NNNNNNNN

Inserts between block 33 and 34 in window
B D             Green monkey 1041bp

Alignment block 34 of 231 in window, 32613616 - 32613632, 17 bps 
B D                     Human  gagtctggatggatgaa
B D                     Chimp  gagtctggatggatgaa
B D                   Gorilla  gagtctggatggatgaa
B D                 Orangutan  gagtctggatggatgaa
B D                    Rhesus  gagtctggatggatgaa
B D       Crab-eating macaque  caggctggctggctaga
B D                    Baboon  gagggtgggtggatgga
B D          Proboscis monkey  gaggctggatgaatgga
B D  Golden snub-nosed monkey  gaggctggatgaatgga
B D                   Tarsier  --------atggatgga
B D                  Bushbaby  -----agaatgaatgga
B D                     Mouse  =================
B D                       Dog  -----------------
B D                  Marmoset  -----------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNN
B D                Tree shrew  -----------------
B D                    Bonobo  -----------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNN
B D              Green monkey  =================
B D                    Gibbon  NNNNNNNNNNNNNNNNN

Alignment block 35 of 231 in window, 32613633 - 32613686, 54 bps 
B D                     Human  tcgg---tggaaagatgaa---------------------------------------------------
B D                     Chimp  tggg---tggaaagatgaa---------------------------------------------------
B D                   Gorilla  tggg---tggatagatgaa---------------------------------------------------
B D                 Orangutan  tggg---tggatagatgaa---------------------------------------------------
B D                    Rhesus  tggg---tggatagatgaa---------------------------------------------------
B D       Crab-eating macaque  tggg---tggatggatgaatgaatggatggacaagagggtgggtggatggatggatgaatagatagatgg
B D                    Baboon  tgga---tgaatagataga------------------------------------------------tgg
B D          Proboscis monkey  tgga---tggatagatgga------------------------------------------------tgg
B D  Golden snub-nosed monkey  taga---tggatagatgga------------------------------------------------tgg
B D                   Tarsier  tgggcaatggatagatggg---------------------------------------------------
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  ----------------------------------------------------------------------
B D                  Bushbaby  ----------------------------------------------------------------------
B D                    Bonobo  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D              Green monkey  ======================================================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ------------------------aggatgggaagctggatggatgaatgg-------------------
                        Chimp  ------------------------aggatgggaagctggatggatgaatgg-------------------
                      Gorilla  ------------------------aggatgggaagctggatggatgaatgg-------------------
                    Orangutan  ------------------------aggatgggaagctggatggatgaatgg-------------------
                       Rhesus  ------------------------tggatgggaagctggatggatgaatgg-------------------
          Crab-eating macaque  atggatgatggatggacaggtggctggatgggaggatagatggatagatggatgtatggatgga------
                       Baboon  atggatgatggatggacaggtggctggatgggaagatagatggatagatggatggatggatggatggatg
             Proboscis monkey  atggatgaa---------------cagatgggagtctggatggatgaatgggtggatagatgaatggatg
     Golden snub-nosed monkey  atggatgaa---------------cagatgggagtctggatggatgaatgggtggatagatgaatggatg
                      Tarsier  ------------------------tggataaga----gaatgaatggaagg-------------------
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Green monkey  ======================================================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---------------------ctggctggatg
                        Chimp  ---------------------ctggctggatg
                      Gorilla  ---------------------ctggctggatg
                    Orangutan  ---------------------ctggctggatg
                       Rhesus  ---------------------ctggctggatg
          Crab-eating macaque  ------tgaacagatgggagtctggatggatg
                       Baboon  gg----tgaacagatgggagtctggatggatg
             Proboscis monkey  ggaagctggatggataggg--ctggctggatg
     Golden snub-nosed monkey  ggaagctggatggataggg--ctggctggatg
                      Tarsier  ---------------------ttggagaggag
                        Mouse  ================================
                          Dog  --------------------------------
                     Marmoset  --------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  --------------------------------
                     Bushbaby  --------------------------------
                       Bonobo  --------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Green monkey  ================================
                       Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 36 of 231 in window, 32613687 - 32613715, 29 bps 
B D                     Human  aatggacaaatgcatggatggatgagagg
B D                     Chimp  aatggacaaatgaatggatggatgagagg
B D                   Gorilla  aatggacaaatgcatggatggatgagagg
B D                 Orangutan  aatggacaaatgcatggatggatgagagg
B D                    Gibbon  aatggacaaatgcatggatggatgagagg
B D                    Rhesus  aatggacaaatgcatggatggatgaaagg
B D       Crab-eating macaque  aatgggtggatagatgaatggatgggaag
B D                    Baboon  aatgggtggatagatgaatggatgggaag
B D          Proboscis monkey  aatggacaaatgcatggatggatgagagg
B D  Golden snub-nosed monkey  aatggacaaatgcatggatggatgagagg
B D                   Tarsier  ggtggataaatggacgga-gggcgagaag
B D                     Mouse  =============================
B D                       Dog  -----------------------------
B D                  Marmoset  -----------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  -----------------------------
B D                  Bushbaby  -----------------------------
B D                    Bonobo  -----------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D              Green monkey  =============================

Inserts between block 36 and 37 in window
B D                  Tarsier 715bp

Alignment block 37 of 231 in window, 32613716 - 32614003, 288 bps 
B D                     Human  ctgactggctggccatttggctggatggata-------gga-gggtgcataggaggctggc---------
B D                     Chimp  ctgactggctggccatttggctggatggata-------gga-gggtgcataggaggctggc---------
B D                   Gorilla  ctgactggctggccatttggctggatggata-------gga-gggtgcagaggaggctggc---------
B D                 Orangutan  ctgactggctggccatttggctggatggata-------gga-gggtgcatgggaggctggc---------
B D                    Gibbon  ctgactggctggccatttggctggatggata-------gga-gggtgcatgggaggctggc---------
B D                    Rhesus  ctgactggctggccatttggctggatggagagata---gta-gggtgcatgggaggctggc---------
B D       Crab-eating macaque  ctggatggatgaatggctggctggatgaatggacaaatgcatggatggatgagaggctgactggctggcc
B D                    Baboon  ctggatggatgaatggctggctggatgaatcgacaaatgcatggatggatgagaggctgactggctggcc
B D          Proboscis monkey  ctgattggctggccatttggctggatggatagata---gta-gggtgcatgggaggctggc---------
B D  Golden snub-nosed monkey  ctgaatggctggccatttggctggatggatagata---gta-gggtgcatgggaggctggc---------
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D           Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  ----------------------------------------------------------------------
B D                  Bushbaby  ----------------------------------------------------------------------
B D                    Bonobo  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D              Green monkey  ======================================================================

                        Human  -------tggatgaatggataggaggctgggatggataggtgggtggacggatggatggatgaatgg---
                        Chimp  -------tggatgaatggataggaggctgggatggataggtgggtggacggatggatggatgaatgg---
                      Gorilla  -------tggatgaatggataggaggctgggatggataggtgggtggacggatggatggatgaatggatg
                    Orangutan  -------tggatgaatggatggaaggctgggatggataggtgggtggatggatggatagatgaatgg---
                       Gibbon  -------tggatgaatggatgggaggctgggatggataggtgggtggatggatgggtggatgaatga---
                       Rhesus  ---tgactggatgaatgg-------------atgggaggct----------------------------g
          Crab-eating macaque  atttggctggatggatagatagtagggt-gcatgggaggctggctgactggatgaatggatgggaggctg
                       Baboon  atttggctggatggatggatagtagggt-gcatgggaggctggctgactggacaaatggatgggaggctg
             Proboscis monkey  ---tgactggatgaatggatgggaggct-ggatggataggtggctggctggctggatggatggatgaatg
     Golden snub-nosed monkey  ---tgactggatgaatggatgggagcct-ggatggataggtgggtgg-----------------------
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  -----atgaattaatgaatgaatgagtgaatgaatgaataaataagtggatggatggatggacaggaggc
                        Chimp  -------------atgaatgaatgagtgaatgaatgaataaa----tggatggatggatggacaggaggc
                      Gorilla  aatgaatgaatgaatgaatgaatgagtgaatgaatgaataaataaatggatggatggacggacaggaggc
                    Orangutan  -atgaatgaatgaatgaatgaataagtgaatgaatgaataaataaatggatggatggacggacaggaggc
                       Gibbon  -------------atgaatgaatgagtgagtgaataaataaa----tggatggatggatggacaggaggc
                       Rhesus  gatggataggtgagtggatggatggatgaatgaatgaataaataaatggatggatggatggacaggaggc
          Crab-eating macaque  gatggataggtgagtggatggatggatgaatgaatgaataaataaatggatggatggatggacaggaggc
                       Baboon  gatggataggtgagtggatggatggatgaatgaatgaataaataaatggatggatggatggacaggaggc
             Proboscis monkey  gatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaataaatggatggatggatggacaggaggc
     Golden snub-nosed monkey  -----atggatggatggatgaatgaatgaatgaataaataaataaatggatggatggatggacaggaggc
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  tggctgatgaatggatgggaggatggatggatggatggat----ggatggatg----gatggatga----
                        Chimp  tggctgatgaatggatgggaggatggatggatggatggat----ggatggatgggcagatgggtgg----
                      Gorilla  tggctgatgaatggatgggaggatggatggatggctggat----ggatgaatgggcagatgggtgg----
                    Orangutan  tggctgatgaatggatggaaggatggatggatggatggatggagggatgaatgggcagatgggtgg----
                       Gibbon  tggctgatgaatggatgggaggatggatggatggatggat----ggatgaatgggcagatgggtgg----
                       Rhesus  tgattgatgaatggatgggaggatggatggatgaatgggt----ggatggatgggtggagggatga----
          Crab-eating macaque  tgattgatgaatggatgggaggatggatggatgaatgggt----ggatggatgggtggagggatga----
                       Baboon  tgattgatgaatgaatgggaggatggatggatgaatgggt----ggatggatgggtggagggatgaatgg
             Proboscis monkey  tgattgatgaatggatgggaggatggatggatgaatgggt----ggatggatgggtggagggatga----
     Golden snub-nosed monkey  tgattgatgaatggatgggaggatggatggatgaatgggt----ggatggatgggtggatggatga----
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  ------------atgggcagatgggtggatg----ggcagatggatgg----------------------
                        Chimp  ------------atgggcagatggatggatg--------gatggatgg----------------------
                      Gorilla  ------------atgggcagatg----------------gatggatga----------------------
                    Orangutan  ------------atgggtagatg----------------gatggatga----------------------
                       Gibbon  ------------atgtgtagatggatggatg--------aatggatgg----------------------
                       Rhesus  ------------atgggaagatggatggatgggttgatggatggatga--------------------at
          Crab-eating macaque  ------------atgggaagatggatggatgggttgatggatggatgaatggatggatggatggatggat
                       Baboon  gaagatggatggatgggttgatggatggatgaatggatggatggatgg----atggatggatggatggat
             Proboscis monkey  ------------atgggtggatggatggatgggttgatggatggatgg----------------------
     Golden snub-nosed monkey  ------------atggatgcgaggctagatg---------------------------------------
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  ------attaatggatggatggacgg
                        Chimp  ----------atggatggatggatgg
                      Gorilla  ----------atggatggatggacgg
                    Orangutan  ----------atggatggatggacgg
                       Gibbon  ----------aaggatggatggatgg
                       Rhesus  ggatggatggatggatggatggacgg
          Crab-eating macaque  ggatggatggatggatggatggacgg
                       Baboon  ggatggatgaatggatggatggacag
             Proboscis monkey  --------------------annnnn
     Golden snub-nosed monkey  --------------------------
                        Mouse  ==========================
                          Dog  --------------------------
                     Marmoset  --------------------------
              Squirrel monkey  NNNNNNNNNNNNNNNNNNNNNNNNNN
                   Tree shrew  --------------------------
                     Bushbaby  --------------------------
                       Bonobo  --------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ==========================
                 Green monkey  ==========================

Alignment block 38 of 231 in window, 32614004 - 32614184, 181 bps 
B D                     Human  atgaatggatgggaggctagatggatt--------aatgggggaatggctggatgaatggacaa----at
B D                     Chimp  atgaatggatgggaggctagatggatt--------aatgggtgaatggctggatgaatggacaa----at
B D                   Gorilla  atgaatggatgggaggctagatggatt--------aatgggtgaatgtctggatgaatgggcaaatagat
B D                 Orangutan  atgaatggatgggaggctagatggatt--------aatgggtgaatggctggatgaatggacaaatagat
B D                    Gibbon  atggatggatgggaggctagatggatt--------aatgggtgaatggctggatgaatggacaaataggt
B D                    Rhesus  atgaatggatgggaggctagatggatt----------------aatggctggatgaatggaaaa-tagat
B D       Crab-eating macaque  atgaatggatgggaggctagatggatt----------------aatggctggatgaatggaaaa-tagat
B D                    Baboon  atgaatggatgggaggctagatggatt--------aatgggtgaatggctggatgaatggaaaa-tagat
B D          Proboscis monkey  nnnnntggatgcgaggctagatggatt--------aatgggtgaatggctggatgaatggaaaa-tagat
B D  Golden snub-nosed monkey  -----------------------gatt--------aatgggtgaatggctggatgaatggaaaa-tagat
B D           Squirrel monkey  atgaatggatgggaggctagatggatgaatggatgaatgggtgaatggctggatgaatggagaa----at
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D                Tree shrew  ----------------------------------------------------------------------
B D                  Bushbaby  ----------------------------------------------------------------------
B D                    Bonobo  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D              Green monkey  ======================================================================

                        Human  ggatggatgagaggctgactggctggccagctggtgggctggctggataggaggctggatgggaaggtgg
                        Chimp  ggatggatgagaggctgactggctggccagctggtagcct------------ggctggatgggaaggtgg
                      Gorilla  ggatggatgagaggctgactggctggccagctggtgggctggctggataggaggctggatgggaaggtgg
                    Orangutan  ggatggatgagaagctgactggctggccagctggtgggctggttggataggcggctggatgggaaggtgg
                       Gibbon  ggatggatgagaggctgactggctggccagctggtgggctggctggataggaggctggatgggagggtgg
                       Rhesus  ggatggatgagaggctgactggctggccaggtggttggctggctggataagaggctggttggcagggtgg
          Crab-eating macaque  ggatggatgagaggctgactggctggccagctggttggctggctggataagaggctggttggcagggtgg
                       Baboon  ggatggatgagaggctgactggctggccagctggttggctggctggataagaggctggttggcagggtgg
             Proboscis monkey  ggatggatgagaggctgactggctggcccgctggttggctggctggataggaggctggttggcagggtgg
     Golden snub-nosed monkey  ggatggatgagaggctgactggctggcccgctggttggctggctggataggaggctggttggcagggtgg
              Squirrel monkey  ggatggatgagaggctgacaggctggtcagctggctggctgaaaggacaggaggctggttgggagggtgg
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  atgggtga----atgga------------tggatgggagggtggatgggtgaatgga------------t
                        Chimp  atgggtga----atgga------------tggatgggagggtggatgggtgaatgga------------t
                      Gorilla  atgggtga----atggacggatgggaggctggatgggagggtggatgggtgaatgga------------t
                    Orangutan  atgggtga----atgga------------tggatgggaggatggatgtatgaatgga------------t
                       Gibbon  atgggtga----atgga------------tggatgggagga-----------------------------
                       Rhesus  gtgggtgaatggatgga------------tggatgggaggctggatgagagggttgt-------------
          Crab-eating macaque  gtgggtgaatggatgga------------tggatgggaggctggatgagagggttgt-------------
                       Baboon  gtgggtgaatggatgga------------tggatgggaggctggataagagggttgt-------------
             Proboscis monkey  atgggtga----atgga------------tggatgggaggttggatgagagggttgt-------------
     Golden snub-nosed monkey  atgggtga----atgga------------tggatgggaggttggatgagagggttgt-------------
              Squirrel monkey  atgggtga----atgga------------gggatgggaggctggatgggagggtggttgggtgaatggct
                        Mouse  ======================================================================
                          Dog  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
                   Tree shrew  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                 Green monkey  ======================================================================

                        Human  ggataggaggc
                        Chimp  ggatgggaggc
                      Gorilla  ggatgggagga
                    Orangutan  ggatgggaggc
                       Gibbon  -----------
                       Rhesus  -----------
          Crab-eating macaque  -----------
                       Baboon  -----------
             Proboscis monkey  -----------
     Golden snub-nosed monkey  -----------
              Squirrel monkey  ggataggaggc
                        Mouse  ===========
                          Dog  -----------
                     Marmoset  -----------
                   Tree shrew  -----------
                     Bushbaby  -----------
                       Bonobo  -----------
                  Mouse lemur  NNNNNNNNNNN
                      Tarsier  ===========
                 Green monkey  ===========

Inserts between block 38 and 39 in window
B D          Squirrel monkey 12bp

Alignment block 39 of 231 in window, 32614185 - 32614195, 11 bps 
B D                     Human  tggatgggagg
B D                     Chimp  tggatgggagg
B D                   Gorilla  tggatgggagg
B D                    Gibbon  tggatggg---
B D                    Rhesus  tggatgaaagg
B D       Crab-eating macaque  tggatgaaagg
B D                    Baboon  tggatgaaagg
B D          Proboscis monkey  tggatgaaagg
B D  Golden snub-nosed monkey  tggatgaaagg
B D           Squirrel monkey  tggatgggagg
B D                  Bushbaby  tggatgggaag
B D                     Mouse  ===========
B D                       Dog  -----------
B D                  Marmoset  -----------
B D                Tree shrew  -----------
B D                    Bonobo  -----------
B D               Mouse lemur  NNNNNNNNNNN
B D                   Tarsier  ===========
B D              Green monkey  ===========
B D                 Orangutan  -----------

Alignment block 40 of 231 in window, 32614196 - 32614224, 29 bps 
B D                     Human  gtggatgggtgaatggatggatgggaggc
B D                   Gorilla  atggatgggtgaatggatggatgggaggc
B D                    Gibbon  ----------gaatggatgggtgggagga
B D                    Rhesus  atggatgggtgaatggatggatggg----
B D       Crab-eating macaque  atggatgggtgaatggatggatgggaggc
B D                    Baboon  atggatgggtgaatggatggatgggaggc
B D          Proboscis monkey  atggatgggtgaatggatggatgggaggc
B D  Golden snub-nosed monkey  atggatgggtgaatggatggaagggaggc
B D           Squirrel monkey  gtagatgggtgaatggatggataggaggc
B D                  Bushbaby  atggatgggaggatgtatggatgggagga
B D                     Mouse  =============================
B D                       Dog  -----------------------------
B D                  Marmoset  -----------------------------
B D                Tree shrew  -----------------------------
B D                    Bonobo  -----------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  =============================
B D              Green monkey  =============================
B D                 Orangutan  -----------------------------
B D                     Chimp  -----------------------------

Alignment block 41 of 231 in window, 32614225 - 32614235, 11 bps 
B D                     Human  tgaatgggagg----
B D                   Gorilla  tggatgggagg----
B D                    Gibbon  tggatgggagg----
B D       Crab-eating macaque  tggatgggagg----
B D                    Baboon  tggatgggagg----
B D           Squirrel monkey  tggttgggagg----
B D                  Bushbaby  ----tggaaggataa
B D                     Mouse  ===============
B D                       Dog  ---------------
B D                  Marmoset  ---------------
B D                Tree shrew  ---------------
B D                    Bonobo  ---------------
B D  Golden snub-nosed monkey  ---------------
B D          Proboscis monkey  ---------------
B D               Mouse lemur  NNNNNNNNNNNNNNN
B D                   Tarsier  ===============
B D              Green monkey  ===============
B D                    Rhesus  ---------------
B D                 Orangutan  ---------------
B D                     Chimp  ---------------

Inserts between block 41 and 42 in window
B D                  Gorilla 164bp

Alignment block 42 of 231 in window, 32614236 - 32614247, 12 bps 
B D                     Human  gtggatgggtga--------
B D                   Gorilla  gtggatgggtga--------
B D                    Gibbon  gtggatgggtga--------
B D       Crab-eating macaque  gtgaatgggtga--------
B D                    Baboon  gtgaatgggtga--------
B D           Squirrel monkey  atggctgggtga--------
B D                  Bushbaby  ----atggatgcaaagaggg
B D                     Mouse  ====================
B D                       Dog  --------------------
B D                  Marmoset  --------------------
B D                Tree shrew  --------------------
B D                    Bonobo  --------------------
B D  Golden snub-nosed monkey  --------------------
B D          Proboscis monkey  --------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ====================
B D              Green monkey  ====================
B D                    Rhesus  --------------------
B D                 Orangutan  --------------------
B D                     Chimp  --------------------

Alignment block 43 of 231 in window, 32614248 - 32614254, 7 bps 
B D                     Human  atggatg
B D                   Gorilla  atggatg
B D                    Gibbon  atggatg
B D       Crab-eating macaque  atgggtg
B D                    Baboon  atgggtg
B D                  Marmoset  atggatg
B D           Squirrel monkey  atggagg
B D                  Bushbaby  atgggtg
B D                     Mouse  =======
B D                       Dog  -------
B D                Tree shrew  -------
B D                    Bonobo  -------
B D  Golden snub-nosed monkey  -------
B D          Proboscis monkey  -------
B D               Mouse lemur  NNNNNNN
B D                   Tarsier  =======
B D              Green monkey  =======
B D                    Rhesus  -------
B D                 Orangutan  -------
B D                     Chimp  -------

Alignment block 44 of 231 in window, 32614255 - 32614260, 6 bps 
B D                     Human  gatggg
B D                   Gorilla  gatggg
B D                    Gibbon  gatggg
B D       Crab-eating macaque  gatggg
B D                  Marmoset  gatgag
B D           Squirrel monkey  gatggg
B D                  Bushbaby  gatggg
B D                     Mouse  ======
B D                       Dog  ------
B D                Tree shrew  ------
B D                    Bonobo  ------
B D  Golden snub-nosed monkey  ------
B D          Proboscis monkey  ------
B D               Mouse lemur  NNNNNN
B D                   Tarsier  ======
B D              Green monkey  ======
B D                    Baboon  ------
B D                    Rhesus  ------
B D                 Orangutan  ------
B D                     Chimp  ------

Alignment block 45 of 231 in window, 32614261 - 32614331, 71 bps 
B D                     Human  aggctggatgggagggtggatggctga------------atggatggatgggaggctggatgggagggtg
B D                   Gorilla  aggctgaatgggagggtggatgggtga------------atggatggatgggaggatggatgggagggtg
B D                    Gibbon  aggctggatgggagggtggatgggtga------------atggatggatgggaggctggatgggtgaatg
B D                    Rhesus  aggctggatgggagggtgaatgggtga------------atgggtggatgggtgaatgggtggatgggtg
B D                  Marmoset  aggctgacaggctggccagatggctgg------------ctgaaaggataggaggctggttgggagggtg
B D           Squirrel monkey  aggctggttgggagggtggctgggtga------------atggagggatgggaggctggttgggagggtg
B D                  Bushbaby  aggatggatggaagaatgtgtggatgatgagaggctaggaagatgggataggagaatggatgaatgggag
B D                     Mouse  ======================================================================
B D                       Dog  ----------------------------------------------------------------------
B D                Tree shrew  ----------------------------------------------------------------------
B D                    Bonobo  ----------------------------------------------------------------------
B D  Golden snub-nosed monkey  ----------------------------------------------------------------------
B D          Proboscis monkey  ----------------------------------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D              Green monkey  ======================================================================
B D                    Baboon  ----------------------------------------------------------------------
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                 Orangutan  ----------------------------------------------------------------------
B D                     Chimp  ----------------------------------------------------------------------

                        Human  gatgggtg----gctgc
                      Gorilla  gatgggtgaatggatgg
                       Gibbon  gatgg------------
                       Rhesus  aatg-------------
                     Marmoset  gatgggtgaatgggggg
              Squirrel monkey  gctgggtgaatggaggg
                     Bushbaby  gatgagtggatgg----
                        Mouse  =================
                          Dog  -----------------
                   Tree shrew  -----------------
                       Bonobo  -----------------
     Golden snub-nosed monkey  -----------------
             Proboscis monkey  -----------------
                  Mouse lemur  NNNNNNNNNNNNNNNNN
                      Tarsier  =================
                 Green monkey  =================
                       Baboon  -----------------
          Crab-eating macaque  -----------------
                    Orangutan  -----------------
                        Chimp  -----------------

Alignment block 46 of 231 in window, 32614332 - 32614336, 5 bps 
B D                     Human  atggg
B D                    Bonobo  atggg
B D                   Gorilla  atggg
B D                    Gibbon  atggg
B D                  Marmoset  atggg
B D           Squirrel monkey  atggg
B D                  Bushbaby  atggg
B D                     Mouse  =====
B D                       Dog  -----
B D                Tree shrew  -----
B D  Golden snub-nosed monkey  -----
B D          Proboscis monkey  -----
B D               Mouse lemur  NNNNN
B D                   Tarsier  =====
B D              Green monkey  =====
B D                    Baboon  -----
B D       Crab-eating macaque  -----
B D                    Rhesus  -----
B D                 Orangutan  -----
B D                     Chimp  -----

Alignment block 47 of 231 in window, 32614337 - 32614356, 20 bps 
B D                     Human  agggtggatgggt------------------------gaatgga
B D                    Bonobo  agggtggatgggt------------------------gaatgga
B D                   Gorilla  agggtggataggt------------------------gaatgga
B D                    Gibbon  aggc----------------------------------------
B D                    Rhesus  --ggtggatgggt------------------------gaatggg
B D              Green monkey  aggatggatgggt------------------------gaatgga
B D                  Marmoset  aagctgaatgaaa-------------------------------
B D           Squirrel monkey  aggctggttgggaggctggctgggagggtggatgggtgaatgga
B D                  Bushbaby  gaggtggatggat------------------------ggatgga
B D                     Mouse  ============================================
B D                       Dog  --------------------------------------------
B D                Tree shrew  --------------------------------------------
B D  Golden snub-nosed monkey  --------------------------------------------
B D          Proboscis monkey  --------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ============================================
B D                    Baboon  --------------------------------------------
B D       Crab-eating macaque  --------------------------------------------
B D                 Orangutan  --------------------------------------------
B D                     Chimp  --------------------------------------------

Inserts between block 47 and 48 in window
B D                 Marmoset 3bp

Alignment block 48 of 231 in window, 32614357 - 32614367, 11 bps 
B D                     Human  tggatgggagg
B D                    Bonobo  tggatgggagg
B D                   Gorilla  tggatgggagg
B D                 Orangutan  tggatgggaag
B D                    Gibbon  tggatgggagg
B D                    Rhesus  tggat------
B D              Green monkey  tggatgggagg
B D           Squirrel monkey  gggatgggagg
B D                  Bushbaby  tagatgaatgg
B D                     Mouse  ===========
B D                       Dog  -----------
B D                  Marmoset  ===========
B D                Tree shrew  -----------
B D  Golden snub-nosed monkey  -----------
B D          Proboscis monkey  -----------
B D               Mouse lemur  NNNNNNNNNNN
B D                   Tarsier  ===========
B D                    Baboon  -----------
B D       Crab-eating macaque  -----------
B D                     Chimp  -----------

Inserts between block 48 and 49 in window
B D                   Bonobo 12bp
B D          Squirrel monkey 24bp

Alignment block 49 of 231 in window, 32614368 - 32614396, 29 bps 
B D                     Human  ---------gtggat----gggtgaatggatggatgggagga
B D                     Chimp  ---------gtggat----gggtgaatggatggatgggagga
B D                    Bonobo  ---------gtggat----gggtgaatggatggatgggagga
B D                   Gorilla  ---------gtggat----gggtgaatggatggatgggaggc
B D                 Orangutan  ---------gtggat----gggtgaatggatggatgggagga
B D                    Gibbon  ---------ctggat----gggtgaatggatggatgggaggc
B D                    Rhesus  -------------------gggtgaatgggtggatgggtgaa
B D              Green monkey  ---------ctggatgggagggtgaatgggtgaatgggtgga
B D                  Marmoset  ---------gtggat----ggttgaatggatggataggaggc
B D           Squirrel monkey  ---------gtggat----gggtgaatggagggataggaggc
B D                  Bushbaby  atgggagaggagaat----gaatgaatagatggctgagaggg
B D                     Mouse  ==========================================
B D                       Dog  ------------------------------------------
B D                Tree shrew  ------------------------------------------
B D  Golden snub-nosed monkey  ------------------------------------------
B D          Proboscis monkey  ------------------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ==========================================
B D                    Baboon  ------------------------------------------
B D       Crab-eating macaque  ------------------------------------------

Inserts between block 49 and 50 in window
B D          Squirrel monkey 4bp

Alignment block 50 of 231 in window, 32614397 - 32614400, 4 bps 
B D                     Human  tgga
B D                     Chimp  tgga
B D                    Bonobo  tgga
B D                   Gorilla  tgga
B D                 Orangutan  tgga
B D                    Gibbon  tgga
B D                    Rhesus  tgg-
B D              Green monkey  tggg
B D          Proboscis monkey  tgga
B D  Golden snub-nosed monkey  tgga
B D                  Marmoset  tggt
B D           Squirrel monkey  tggt
B D                  Bushbaby  tgaa
B D                     Mouse  ====
B D                       Dog  ----
B D                Tree shrew  ----
B D               Mouse lemur  NNNN
B D                   Tarsier  ====
B D                    Baboon  ----
B D       Crab-eating macaque  ----

Alignment block 51 of 231 in window, 32614401 - 32614410, 10 bps 
B D                     Human  tgggagggtg
B D                     Chimp  tgggaggacg
B D                    Bonobo  tgggaggacg
B D                   Gorilla  tgggagggtg
B D                 Orangutan  tgggagggtg
B D                    Gibbon  tgggagggtg
B D                    Rhesus  -------gtg
B D       Crab-eating macaque  tgaatgggtg
B D              Green monkey  tgaatggttg
B D          Proboscis monkey  tgggagggtg
B D  Golden snub-nosed monkey  tgggagggtg
B D                  Marmoset  tgggagggtg
B D           Squirrel monkey  tgggaggttg
B D                  Bushbaby  tgggaaggtg
B D                     Mouse  ==========
B D                       Dog  ----------
B D                Tree shrew  ----------
B D               Mouse lemur  NNNNNNNNNN
B D                   Tarsier  ==========
B D                    Baboon  ----------

Alignment block 52 of 231 in window, 32614411 - 32614438, 28 bps 
B D                     Human  ----gatgggtgaatggatggatggagagaag
B D                     Chimp  ----gatgggtgaatggatggatggagagaag
B D                    Bonobo  ----gatgggtgaatggatggatggagagaag
B D                   Gorilla  ----gatgggtgaatggatggatggagagaag
B D                 Orangutan  ----gatgcgtgaatggatggatggagagaag
B D                    Gibbon  ----gatgggtgaatggatggatggagagaag
B D                    Rhesus  ----gatgggtgaatggatggatggagagaag
B D       Crab-eating macaque  ----gatgggtgaatggatggatggagagaag
B D                    Baboon  ----gatgggtgaatggatggatggagaggag
B D              Green monkey  ----gatgggtgaatggatggatggagagaag
B D          Proboscis monkey  ----gatgggtgaatggatggatggagagaag
B D  Golden snub-nosed monkey  ----gatgggtgaatggatggatggagagaag
B D                  Marmoset  ----gatgggtgaatggatggatggagagaag
B D           Squirrel monkey  ----gttgggtgaatggtgggatgcagagaag
B D                  Bushbaby  gttggatgtatggatgaatggatagaaagaag
B D                     Mouse  ================================
B D                       Dog  --------------------------------
B D                Tree shrew  --------------------------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ================================

Alignment block 53 of 231 in window, 32614439 - 32614455, 17 bps 
B D                     Human  ggtccctgaactggtag
B D                     Chimp  ggtccctgaactggtag
B D                    Bonobo  ggtccctgaactggtag
B D                   Gorilla  ggtccctgaactggtag
B D                 Orangutan  ggtccctgaactggtag
B D                    Gibbon  ggtccctgaactggtag
B D                    Rhesus  ggcccctgaactggtag
B D       Crab-eating macaque  ggcccccgaactggtag
B D                    Baboon  ggcccctgaactggtag
B D              Green monkey  ggcccctgaactggtag
B D          Proboscis monkey  ggcccctgaactggtag
B D  Golden snub-nosed monkey  ggcccctgaactggtag
B D                  Marmoset  ggcctctgaactggtag
B D           Squirrel monkey  ggcccctgaactggtag
B D                  Bushbaby  gacccctaagctggtgg
B D                       Dog  gacccctgggccagcag
B D                     Mouse  =================
B D                Tree shrew  -----------------
B D               Mouse lemur  NNNNNNNNNNNNNNNNN
B D                   Tarsier  =================

Alignment block 54 of 231 in window, 32614456 - 32614535, 80 bps 
B D                     Human  actcctt--agtgcccagcatgagctctgc-ctgattccacttaggtaaagggaaattca-----atggg
B D                     Chimp  actcctt--agtgcccagcatgagctctgc-ctggttccacttaggtaaagggcaattta-----atggg
B D                    Bonobo  actcctt--agtgcccagcatgagctctgc-ctggttccacttaggtaaagggcaattta-----atggg
B D                   Gorilla  actcctt--agtgcccagcatgagctctgc-ctagttccacttaggtaaagggcaattta-----atggg
B D                 Orangutan  actcttttaagtgcccagcatgagctctgc-ctggttccacttaggtaaagggcaattaannnnnnnnnn
B D                    Gibbon  actcctt--agtgcccagcatgtgctctgc-ctggttccacttaggtaaagggcaattta-----atggg
B D                    Rhesus  actcctt--agtgcccagcatgagccctgc-ctggttccacttaggtaaggggcaattta-----gtggg
B D       Crab-eating macaque  actcctt--agtgcccagcatgagccctgc-ctggttccacttaggtaaggggcaattta-----gtggg
B D                    Baboon  actcctt--agtgcccagcatgagccctgc-ctggttccacttaggtaaggggcaattta-----gtggg
B D              Green monkey  actcctt--agtgcccagcatgagccctgc-ctgattccacttaggtaaagggcaattta-----gtggg
B D          Proboscis monkey  actcctt--agtgcccaacatgagacctgc-ctggttccacttaggtaaagggtaattta-----atggg
B D  Golden snub-nosed monkey  actcctt--agtgcccaacatgagccctgc-ctggttccacttaggtaaagggcaattta-----atggg
B D                  Marmoset  atgcctc--agtgcccagcatgggccttgcactggttccacttgggtaaaaggcaa-tta-----atggg
B D           Squirrel monkey  actcctc--agtgcccagcatgggctctgc-ctggttccacttgggtaaagggcaattta-----atggg
B D                  Bushbaby  actcctc--agtgcccaacacaagccctgc-c----tccacttgcgtaa-gggcaatttg-----gtggg
B D                Tree shrew  actcctc--agtg-ccaacacaagtcctgc-ctggctccacttgagtaaaagtcaa--------------
B D                       Dog  actcctc--agtacccaa-------------c---------------aaaggacaactca-----gtggg
B D                     Mouse  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  caaatgagtccttcactc
                        Chimp  caaatgagtccttcactc
                       Bonobo  caaatgagtccttcactc
                      Gorilla  caaatgagtccttcactc
                    Orangutan  caaatgagtccttcactc
                       Gibbon  caaatgagtccttcactc
                       Rhesus  caaaggagcccttcactc
          Crab-eating macaque  caaaggagcccttcactc
                       Baboon  caaatgagcccttcactc
                 Green monkey  caaatgagcccttcactc
             Proboscis monkey  caaatgagcccttcactc
     Golden snub-nosed monkey  caaatgagcccttcactc
                     Marmoset  -aaatgagctcttcactc
              Squirrel monkey  -aaatgagctcttcactc
                     Bushbaby  cgaa--------------
                   Tree shrew  ------------------
                          Dog  tgaatgaatgcttgactt
                        Mouse  ==================
                  Mouse lemur  NNNNNNNNNNNNNNNNNN
                      Tarsier  ==================

Alignment block 55 of 231 in window, 32614536 - 32615238, 703 bps 
B D                     Human  cttccttgctctcagttctcatatccactctactcccagagcc--catctattttacctctaactctctc
B D                     Chimp  cttccttgctctcagttctcatatccactctactcccagagcc--catctattttacctctaactctctc
B D                    Bonobo  cttccttgctctcagttctcatatccactctactcccagagcc--catctattttacctctaactctctc
B D                   Gorilla  cttccttgctctcagttctcatatccactcttctcccagggcc--catctattttacctctaactctctc
B D                 Orangutan  cttccttgctctcagttctcatatacactctactcccagggcc--catctatgttacctctaaatctctc
B D                    Gibbon  cttccttgctctcagttctcatatacactctactcccagggcc--catctattttacctctaactctctc
B D                    Rhesus  ctcccttgctcttagttctcatatccactctactcccagggcc--catctattttacctctaactctctc
B D       Crab-eating macaque  ctcccttgctcttagttctcatattcactctactcccagggcc--catctattttacctctaactctctc
B D                    Baboon  ctcccttgctcttagttctcatatccactctattcccagggcc--catctattttacctctaactctctc
B D              Green monkey  ctcccttgctcttagttctcatatccactctactcccagggcc--catctattttacctctaactctctc
B D          Proboscis monkey  ctcccttgctcttagttctcatacccactccactcccagggcc--catctattttacctctaactctctc
B D  Golden snub-nosed monkey  ctcccttgctcttagttctcatatccactctactcccagggcc--catctattttacctctaactctctc
B D           Squirrel monkey  ctcctttgccctcagttctcatgtccactctattcccagggcc--catctcttttacctctaa----ctc
B D                  Bushbaby  -ttccctgctctcagctctcatattcattgtccctccagggcctatatctgttttacctctaactctctc
B D                Tree shrew  ----cttggttttagccctcatgctcactctctccccagggcc--c------tctacctccaact-tgtc
B D                       Dog  ctcccttggtcttagc-cttgcattcactctaccttcagggcc---atccatttaacctctaactttctt
B D                     Mouse  ======================================================================
B D                  Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  tccaactcccctaccacctcccaacaaaggccactaccccctctagcctggac-ac-cgcagcacccatc
                        Chimp  tccaactcccctaccacctcccaacaaaggccactatcccctctagcctggac-ac-cgcagcacccatc
                       Bonobo  tccaactcccctaccacctcccaacaaaggccactatcccctctagcctggac-ac-cgcagcacccatc
                      Gorilla  tccaactcccctaccacgttccaacaaaggccactaccccctctagcctggac-ac-cgcagcacccatc
                    Orangutan  tccaactcccctaccacctcccaacaaaggccactaccccctctagcctggac-ac-cacagcacccatc
                       Gibbon  tccaactcccctaccacctcccaacaaaggccactaccccctctagcccggac-ac-cacagcacccatc
                       Rhesus  tccaactcccctaccacctcccaactaaggcc-ctaccccctctaacgtggac-ac-cacagcaccca--
          Crab-eating macaque  tccaactcccctaccacctcccaactaaggcc-ctaccccctctaacctggac-ac-cacagcaccca--
                       Baboon  tccaactcccctaccacctcccaactaaggcc-ctaccccctctaacctggac-ac-cacagcaccca--
                 Green monkey  tccaactcccctaccacctcccaactaaggcc-ctaccccctctaacctggac-ac-catagcaccca--
             Proboscis monkey  tccaactcccctaccacctcccaactaaggcc-ctacctccgctaacctggac-gc-cacagcaccca--
     Golden snub-nosed monkey  tccaactcccctaccacctcccaactaaggcc-ctacctcctctaacctggac-gc-cacagcaccca--
              Squirrel monkey  tccaactccccgaccacctcccgactaaggccactacccccactagcctggac-ac-catgacacccatc
                     Bushbaby  tccacctcctctgtcacctcccagcaaagctg-ccaccgtcactagcatggac-ac-caccgcactcatc
                   Tree shrew  tccatctc----------tcctggctaagacccccaccctctgtagcctgggt-gtgcacagtacctgtc
                          Dog  ttcatctcccctgctacctcctggctaaggacactatcctctttatcctggacaac-catagcacagttc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  tcacta-ggctccctgctgccttccaaacc-------ctacttcaggtcattctctgagggcagtaggag
                        Chimp  tcacta-ggctccctgctgccttccaaacc-------ctacttcaggtcattctctgagggcagtaggag
                       Bonobo  tcacta-ggctccctgctgccttccaaacc-------ctacttcaggtcattctctgagggcagtaggag
                      Gorilla  tcacta-ggctccctgctgccttccaaacc-------ctacttcaggtcattctctgagggcagtaggag
                    Orangutan  tcacta-ggctccctgctgccttccagacc-------ctacttcaggccattctttgagggcagtaggag
                       Gibbon  tcacta-gtctccctgctgccttccagacc-------ctacttcaggtcattccctgagggcagtaggag
                       Rhesus  tcactagggctccccactgccttccagacc-------ctacttcaggtcattctctgagagcagtaggaa
          Crab-eating macaque  tcactagggctccccactgccttccagacc-------ctacttcaggtcattctctgagagcagtaggag
                       Baboon  tcactagggctccccactgccttccagacc-------ctacttcaggtcattctctgagagcagtaggag
                 Green monkey  tcactagggctccctgctgccttccagacc-------ttacttcaggtcattctctgagagcagtaggag
             Proboscis monkey  tcactagggct-cccgctgccttccagacc-------ctgcttcaggtcattctctgagagcagtaggag
     Golden snub-nosed monkey  tcactagggctccccgctgccttccagacc-------ctgcttcaggtcattctctgagagcagtaggag
              Squirrel monkey  tcacta-ggctcgctgctgcctttcagacc-------ctacttcagatcattctctgagggcagtaggag
                     Bushbaby  ttactg-ggctccctatcacctccctcacc-------ctactctgagtcattctctgaggggagca-gag
                   Tree shrew  tccct--ggctcccagctgcctccctcgcc---------acttcaggtcattccctgcgggcag------
                          Dog  tcactg-ggctccctgctgcctccctcacctctttacccctttcagctcattctccaagagcaa---gaa
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gagttatgatgtaaattagcacctacttcccaccgcctcaaatctcccactggctctcctggagct----
                        Chimp  gagttatgatgtaaattagcacctacttcccaccgcctcaaatctcccactggctctcctggagct----
                       Bonobo  gagttatgatgtaaattagcacctacttcccaccgcctcaaatctcccactggctctcctggagct----
                      Gorilla  gagttatgatgtaaattagcacctacttcccaccgccttaaatctcccactggctctcctggagct----
                    Orangutan  gagttatgatgtaaattagcacccacttcccactgcctcaaatctctcactggctctcctggagct----
                       Gibbon  gagttacgatgtaaattagcacccacttcccacggcctcaaatctcccactggctctcctggagct----
                       Rhesus  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
          Crab-eating macaque  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
                       Baboon  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
                 Green monkey  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
             Proboscis monkey  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
     Golden snub-nosed monkey  gagttatgatgtaaattagcccccacttcccactgcctcaagtctcccactggctatcctggagct----
              Squirrel monkey  gagttatgatgtaaattagcccccgcttcccactgcctcaaatctcccactggctttcctggagct----
                     Bushbaby  gagttatgatgtaaattagcctgcacattccactccctcaaatctgcccccagccctcttggagtt----
                   Tree shrew  gagttaggacataaactagctccctcttcctgctgcctcagacctcccgcacgccgtcctggggcc----
                          Dog  gagccaggatagaagttagctcccactaccccctgcctcaactctccccct-gccctcctcaccctggtc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ------cctaactgggact-------gagtt-------ac---------ctctggacctcatcttccact
                        Chimp  ------cctaactgggact-------gagtt-------ac---------ctctggacctcatcttccact
                       Bonobo  ------cctaactgggact-------gagtt-------ac---------ctctggacctcatcttccact
                      Gorilla  ------cctaactgggact-------gaatt-------ac---------ctctggacttcatcttccact
                    Orangutan  ------cctaactgggact-------gagtt-------ac---------ctctggacctcatcttccact
                       Gibbon  ------cctaactgggact-------gagtt-------ac---------ctctagacctcatcttccact
                       Rhesus  ------ccttactgggact-------gagtt-------ac---------ctctggccctcgtcttccact
          Crab-eating macaque  ------ccttactgggact-------gagtt-------ac---------ctctggccctcgtcttccact
                       Baboon  ------ccttactgggact-------gagtt-------ac---------ctctggccctcgtcttccact
                 Green monkey  ------ccttactgggact-------gagtt-------ac---------ctctggccctcgtcttccact
             Proboscis monkey  ------ccttactgggact-------gagtt-------ac---------ctctggacctcattttccact
     Golden snub-nosed monkey  ------ccttactgggact-------gagtt-------ac---------ctccggacctcattttccact
              Squirrel monkey  ------ccttactgggact-------gagct-------ac---------ctccagacctcctcttccgct
                     Bushbaby  ------ccctactgtcatcta---tagagct-------tcccacaactgctctggacctcacctcccact
                   Tree shrew  -----------ctcggtctcatcctcagggc-------cc---------ctgtggacctcatctcccacc
                          Dog  cacaggcctcac-atgatt-------gagctcccagtcac---------ctctggacctcacctcctgcc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gccttcacgcaa--tctccgatccctctgtgctctgctattaagtggtctccttgctgtctccaacaggc
                        Chimp  gccttcacgcaa--tctccgatccctccgtgctctgctattaagtggtctccttgctgtctccaacaggc
                       Bonobo  gccttcacgcaa--tctccgatccctccgtgctctgctattaagtggtctccttgctgtctccaacaggc
                      Gorilla  gccttcacgcaa--tctccgatccctccgtgctctgctattaagtggtctccttgctgtctccaacaggc
                    Orangutan  gccttcacacaa--tctcccatccctccgtgctctgctattaagtggtctccttgctgtccccaacaggc
                       Gibbon  gccttcacgcca--tctctgatccctccgtgctctgccattaagtggtctccttgcagtccc-------c
                       Rhesus  gcctgcacacaa--tctctgatccctccatgctctgctattacgtggtctccttgcagtccccaacaggc
          Crab-eating macaque  gcctgcacacaa--tctctgatccctccatgctctgctattacgtggtctccttgcagtccccaacaggc
                       Baboon  gcctgcacacaa--tctctgatccctccatgctctgctattacgtggtctccttgcagtccccaacaggc
                 Green monkey  gcctgcacacaa--tctctgatccctccatgctctgctattacgtggtctccttgcagtccccaacaggc
             Proboscis monkey  gccttcacacaa--tctctgatccctctatgctctgctgttaagtggtcttcttgcagtccccaacaggc
     Golden snub-nosed monkey  gccttcacacaa--tctctgatccctctatgctctgctgttaagtggtcttcttgcagtccccaacaggc
              Squirrel monkey  gccctcacccaa--tccctgatccctccacgctctgccactgactggt---cttgctgcccccaaaaggc
                     Bushbaby  -cctccacctaa---cccagatctctccatgctctgtcactgactggtctccttgccagttcccacatgc
                   Tree shrew  accccgagccaag-tcctagatatcttcatgct----------------------------tccgcacgc
                          Dog  cccgccacacacacctcccaatctctccatgctct--------------------------tccacactg
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  accatgctctcaccca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
                        Chimp  accatgctctcaccca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
                       Bonobo  accatgctctcaccca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
                      Gorilla  accatgctctcaccca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
                    Orangutan  accatgctctcaccca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
                       Gibbon  accatgctctcaccca-ctccaagacttagaacactcctttgccacccatccctagcctcagagccaaca
                       Rhesus  accacgctctcaccca-ctccaaggcttagaacactcctccgccacccatccccagcctcaaagccaaca
          Crab-eating macaque  accacgctctcaccca-ctccaaggcttagaacactcctccgccacccatccccagcctcaaagccaaca
                       Baboon  accacgctctcatcca-ctccaaggcttagaacactcctccgtcacccatccccagcctcagagccaaca
                 Green monkey  accatgatctcatcca-ctccaaggcttagaacactcctctgccacccatccccagcctcagagccaacg
             Proboscis monkey  accatgttttcatcca-ctccaagacttagaacactcctccgccacccatccccagcctcagagccaaca
     Golden snub-nosed monkey  accatgctttcatcca-ctccaagacttagaacactcctctgccacccatccccagcctcagagccaaca
              Squirrel monkey  ac-----------cca-ctccaaggcttagaacactcctccaccacccgtcctcagcctcagagcgaaca
                     Bushbaby  acca-gctcccacccatctctgaggctgggatcactcttccatcacccatccacagccctagaactaaca
                   Tree shrew  accgagcttgcgtcta-cagc-aggctcgtgacactctttcactgtgtgtccccagccccataaccaatg
                          Dog  actgggctccagtcca-ct-------------------------gtccagccccttaatcacagc--acc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  tacccacatttcacccacctacttcctactccccttcagatctcaagtcagcagccacttccacaaagaa
                        Chimp  cacccacatttcacccacctacttcctactccccttcagatctcaagtcagcagccacttccacaaagaa
                       Bonobo  cacccacatttcacccacctacttcctactccccttcagatctcaagtcagcagccacttccacaaagaa
                      Gorilla  cacccacatttcacccacctacttcctactccgcttcagatctcaagtcagcagccgcttccacaaagaa
                    Orangutan  cacccacacttcacccacctacctcctactccccttcagatctcaagtcagcagctgcttccacaaagaa
                       Gibbon  cacccacacttcacccacctacctcctactccccttcagatctcaagtcagcagccgcttccacaaagaa
                       Rhesus  catccacactttacccacctacctcctactccccttcagatctcaagtcagcagttgcttccacaaagaa
          Crab-eating macaque  catccacactttacccacctacctcctactccccttcagatctcaagtcagcagttgcttccacaaagaa
                       Baboon  cacccacacttcacccacctacctccta-tccccttcagatctcaagtcagcagttgcttccacaaagaa
                 Green monkey  cacccacacttcacccacctacctcctactccccttcagatctcaagtcagcagttgcttccacaaagaa
             Proboscis monkey  catccacacttcacccacctacctcctactccccttcagatctcaagtcagcagttgcttccacaaagaa
     Golden snub-nosed monkey  catccacacttcacccacctacctcctactccccttcagatctcaagtcagcagttgcttccacaaagaa
              Squirrel monkey  tacccacacttcacccacttacctcctactccccctcagatcccaagtcagcagccacttccacaaagag
                     Bushbaby  cacccccaccacacccatttccctcc-------ctgaagatctcggcctggcagccaattcctcaagaga
                   Tree shrew  tgcccacaccttacccacctacccccagctccccctcagagctccgatcagcagccacttccccaagaac
                          Dog  cacactcacttcaccagcttacctcctactcccttccaaatctcagctaagcagccgcttcctcaaagaa
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gccctccttgac------------------cccca-----------------------------------
                        Chimp  gccctccttgac------------------cccca-----------------------------------
                       Bonobo  gccctccttgac------------------cccca-----------------------------------
                      Gorilla  gccctccttgac------------------cccca-----------------------------------
                    Orangutan  gccctccttgac------------------cccca-----------------------------------
                       Gibbon  gccctccttgac------------------cccca-----------------------------------
                       Rhesus  gccctcctggac------------------cgcca-----------------------------------
          Crab-eating macaque  gccctcctggac------------------cgcca-----------------------------------
                       Baboon  gccctcctggac------------------cccca-----------------------------------
                 Green monkey  gccctccttgac------------------cccca-----------------------------------
             Proboscis monkey  gccctccttgac------------------cccca-----------------------------------
     Golden snub-nosed monkey  gccctccttgac------------------cccca-----------------------------------
              Squirrel monkey  gccctgcttgac------------------cccca-----------------------------------
                     Bushbaby  gcccatcttgactctgtcctgagcagggcactcca------------------tcacgtgctcacatagc
                   Tree shrew  accctcggtgac------------------cccagcctgcacc-ggcac-ccgtcgaatgctcccatagt
                          Dog  gccctcctggac------------------cccagccggtgccaggcactcccctgtatactcccacagc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gcctggacttttattttacagctcttcttacagctgcaggcatgtgcttgcatggttagtaacatctgtc
                        Chimp  gcctggacttttattttacagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                       Bonobo  gcctggacttttattttacagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                      Gorilla  gcctggacttttattttacagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                    Orangutan  gcctggacttttattttatagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                       Gibbon  gcctggacttttattttatagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                       Rhesus  gcctggacttgta-tttatagttcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
          Crab-eating macaque  gcctggacttgta-tttatagttcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
                       Baboon  acctggacttgta-tttatagttcttcttacagctgcaggcgtgtgcttgcatgattagtaacatctgtc
                 Green monkey  gcctggacttgta-tttatagttcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
             Proboscis monkey  gcctggacttgta-tttatagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
     Golden snub-nosed monkey  gcctggacttgta-tttacagctcttcttacagctgcaggcatgtgcttgcatgattagtaacatctgtc
              Squirrel monkey  gcctggactttcattttatagctcttcttacagctgcaggcatgtgcttgcatgattagtaacacctgtc
                     Bushbaby  actcagacttttattttataactcttcttgcaactgtaggcacatgcttgtgtgactaataacatctgtc
                   Tree shrew  gcccggacctttgttttagcgctcttcctgcagctgcacgtgtctgcttatgtgattaacagcgtctgtc
                          Dog  tcccgaaccttgagtttacagttccccttccagctgcaggaatgtgcttgtgtgactaataccatctgtc
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ccccaggacacaaaccagcatgggcctggggctctgtctgtcccattccccgctagg-cccctgt---ac
                        Chimp  ccccaggacacaaaccagcatgggcctggggctctgtctgtcccattccccgctagg-cccctgt---ac
                       Bonobo  ccccaggacacaaaccagcatgggcctggggctctgtctgtcccattccccgctagg-cccctgt---ac
                      Gorilla  ccccaggacacaaaccagcatgggcctggggctctgtctgtcccattcgccgctagg-cccctgt---ac
                    Orangutan  ccccaggacacaaaccagcatgggcctggggctctgtctgtcccattcccccctagg-cccctgt---ac
                       Gibbon  ccccaggacacaaaccggcatgggcctggggctctgtctgtcccattcccccctagg-cccctgt---ac
                       Rhesus  ccccgggactcgaaccggcatgggcctaggg--ctgtctgtcccattcttccatagg-cccctgt---ac
          Crab-eating macaque  ccccgggactcgaactggcatgggcctaggg--ctgtctgtcccattcttccatagg-cccctgt---ac
                       Baboon  ccccgggactcgaaccggcatgggcctaggg--ctgtctgtcccattcttccatagg-cccctgt---ac
                 Green monkey  ccccaggactcgaaccggcaggggcctaggg--ctgtctgtcccattcccccgtagg-cccctgt---ac
             Proboscis monkey  ccccgggactcgaaccggcatgggcctgggg--ctgtctgtcccattcccccgtagg-cccctgt---ac
     Golden snub-nosed monkey  ccccgggactcgaaccgtcatgggcctgggg--ctgtctgtcccattcccccatagg-cccctgt---ac
              Squirrel monkey  ccccagtacacgaaccggcatgggcccaggg----------ctcatttcccc-tagg-cccctgt---ac
                     Bushbaby  ccccagtgcacagacctacatgggcccaggc-----tctgactcaccctccactggt-cccctgtaccac
                   Tree shrew  ctccag-------------------ctggggtcctaactgtctcactgcccacagggtcccctgc---ac
                          Dog  ctcag-----tggacctgagtggg--tgggg----ccctgtctcattccctcctgggccccctgc---ac
                        Mouse  ======================================================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ctagcatagcatctggcac-taagtcaa-------gctcattgagt
                        Chimp  ctagcatagcatctggcac-taagtcaa-------gctcattgagt
                       Bonobo  ctagcatagcatctggcac-taagtcaa-------gctcattgagt
                      Gorilla  ctagcatagcatctggcac-taagtcaa-------gctcattgagt
                    Orangutan  ctagtacagcatctggcac-taagtcaa-------gctcattgagt
                       Gibbon  ctagcacagcatctggaac-taagtcaa-------gctcattgagt
                       Rhesus  ctagcacagcatctgggac-taagtcaa-------gctcattgagt
          Crab-eating macaque  ctagcacagcatctgggac-taagtcaa-------gctcattgagt
                       Baboon  ctagcacagcatctgggac-taagtcaa-------gctcattgagt
                 Green monkey  ctagcacagcatctggcac-taagtcaa-------gctcattgagt
             Proboscis monkey  ctagcacagcatctggcac-taagtcaa-------gctcattgagt
     Golden snub-nosed monkey  ctagcacagcatctggcac-taagtcaa-------gctcattgagt
              Squirrel monkey  ctagcacagcatctggcac-taagtcaa-------gctcatttagt
                     Bushbaby  ccagcacaggggctggcac-ggggcgggggggggcgctcattgagc
                   Tree shrew  ccagcacagggtctcccac-atagttggg------gcttgttgaat
                          Dog  tcagcacaggggctggcacataggtaag-------acttacagagg
                        Mouse  ==============================================
                     Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ==============================================

Inserts between block 55 and 56 in window
B D               Tree shrew 63bp

Alignment block 56 of 231 in window, 32615239 - 32615241, 3 bps 
B D                     Human  att
B D                     Chimp  att
B D                    Bonobo  att
B D                   Gorilla  att
B D                 Orangutan  att
B D                    Gibbon  att
B D                    Rhesus  att
B D       Crab-eating macaque  att
B D                    Baboon  att
B D              Green monkey  att
B D          Proboscis monkey  att
B D  Golden snub-nosed monkey  att
B D           Squirrel monkey  att
B D                  Bushbaby  att
B D                       Dog  att
B D                     Mouse  ===
B D                  Marmoset  NNN
B D                Tree shrew  ===
B D               Mouse lemur  NNN
B D                   Tarsier  ===

Inserts between block 56 and 57 in window
B D                      Dog 167bp

Alignment block 57 of 231 in window, 32615242 - 32615242, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                    Bonobo  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D          Proboscis monkey  a
B D  Golden snub-nosed monkey  a
B D           Squirrel monkey  g
B D                  Bushbaby  t
B D                     Mouse  =
B D                       Dog  =
B D                  Marmoset  N
B D                Tree shrew  =
B D               Mouse lemur  N
B D                   Tarsier  =

Inserts between block 57 and 58 in window
B D          Squirrel monkey 320bp

Alignment block 58 of 231 in window, 32615243 - 32615245, 3 bps 
B D                     Human  gtt
B D                     Chimp  gtt
B D                    Bonobo  gtt
B D                   Gorilla  gtt
B D                 Orangutan  gtt
B D                    Gibbon  gtt
B D                    Rhesus  g--
B D       Crab-eating macaque  g--
B D                    Baboon  g--
B D              Green monkey  gtt
B D          Proboscis monkey  gtt
B D  Golden snub-nosed monkey  gtt
B D           Squirrel monkey  gtt
B D                  Bushbaby  gtt
B D                     Mouse  ===
B D                       Dog  ===
B D                  Marmoset  NNN
B D                Tree shrew  ===
B D               Mouse lemur  NNN
B D                   Tarsier  ===

Inserts between block 58 and 59 in window
B D                 Bushbaby 137bp

Alignment block 59 of 231 in window, 32615246 - 32615309, 64 bps 
B D                     Human  tatttattttaaatataaaggttttaaataaactg-----------cacacaggctggagtgcaatagtg
B D                     Chimp  tatttattttaaatataaaggttttaaataaactg-----------cacaccggctggagtgcaatagtg
B D                    Bonobo  tatttattttaaatataaaggttttaaataaactg-----------cacgccggctggagtgcaatagtg
B D                   Gorilla  tatttattttaaatataaaggttttaaataaagtg-----------cacacaggctggactgcaatagtg
B D                 Orangutan  tatttattttaaatataaaggttttaaataaactg-----------cactcaggctggagtgcaatagtg
B D                    Gibbon  tatttattttaaatagaaaggttttaaataaactg-----------cactcaggctggagtgcaatagtg
B D                    Rhesus  --tttattttaaatataaaagttttaaataaactg-----------cactcaggctggaatgcaatagtg
B D       Crab-eating macaque  --tttattttaaatataaaagttttaaataaactg-----------cactcaggctggaatgcaatagtg
B D                    Baboon  --tttattttaaatataaaggttttaaataaactg-----------cactcaggctggaatgcaatagtg
B D              Green monkey  tatttattttaaatataaaggttttaaataaactg-----------cactcaggctggaatacaatagtg
B D          Proboscis monkey  tatttattttaaatataaaggttttaaataaactg-----------cactcaggctggaatgcaatagtg
B D  Golden snub-nosed monkey  tatttattttaaatataaaggttttaaataaattc-----------cactcaggctggaatgcaatagtg
B D           Squirrel monkey  tatttatttttaat-----tattttagagacagggtctccttctgcccctcaggctggagtgcaatagtg
B D                     Mouse  ======================================================================
B D                       Dog  ======================================================================
B D                  Marmoset  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  tgatc
                        Chimp  tgatc
                       Bonobo  tgatc
                      Gorilla  tgatc
                    Orangutan  tgatc
                       Gibbon  tgatc
                       Rhesus  tgatc
          Crab-eating macaque  tgatc
                       Baboon  tgatc
                 Green monkey  tgatc
             Proboscis monkey  tgatc
     Golden snub-nosed monkey  tgatc
              Squirrel monkey  tgatc
                        Mouse  =====
                          Dog  =====
                     Marmoset  NNNNN
                   Tree shrew  =====
                     Bushbaby  =====
                  Mouse lemur  NNNNN
                      Tarsier  =====

Alignment block 60 of 231 in window, 32615310 - 32615805, 496 bps 
B D                     Human  atagctcactgtagcctcaaacttctgggctcaagaaattctcctgtctcagcccc-c--caagtagctg
B D                     Chimp  atagctcactgtagcctcaaacttctgggctcaagaaattctcctgtctcagcccc-c--caagtagctg
B D                    Bonobo  atagctcactgtagcctcaaacttctgggctcaagaaattctcctgtctcagcccc-c--caagtagctg
B D                   Gorilla  atagctcactgtagcctcaaacttctgggctcaagaaattctcctgtctcagcccc-c--caagtagctg
B D                 Orangutan  atagcttactgtagcctcaaacttctgggctcaagaaattctcctgcctcagcccc-c--caagtagctg
B D                    Gibbon  atagctcactgtagcctcaaacttctgggctcaagaaattctcctgcctcagcccc-c--caagtagcta
B D                    Rhesus  atagctcactgcagcctcaaacttctgggctcaagaaattttcctgcctcagcccc-c--caaatagcgg
B D       Crab-eating macaque  atagctcactgcagcctcaaacttctgggctcaagaaattttcctgcctcagcccc-c--caaatagctg
B D                    Baboon  atagctcactgcagcctcaaacttctgggctcaagaaattttcctgcctcagcccc-c--caaatagctg
B D              Green monkey  atagctcactgcagcctcaaacttctgggctcaagaaattttcctgcctcagcccc-c--caaatagctg
B D          Proboscis monkey  atagctcactgcagcctcaaacttctgggctcaagaaattcccctgcctcagcccc-ccgcaaatagctg
B D  Golden snub-nosed monkey  atagctcactgcagcctcaaacttctgggctcaagaaattcccctgcctcagcccc-cc-caaatagctg
B D                  Marmoset  acagctcactgcagcctcaaacttctgggctca----gttctcctgcctcagcccc-c--taaaaggctg
B D           Squirrel monkey  acagctcactgtagcctcaaacttctggactcaagacattctcctgcctcagccccac--taaaaggctg
B D                     Mouse  ======================================================================
B D                       Dog  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  gaactactggcatatgccatcatacctggctaatttttttacttttttttttttttttttttttttttgt
                        Chimp  gaactactggcatatgccatcatacctggctaatttttttac---tttttttttttttttttttttttgt
                       Bonobo  gaactactggcatatgccatcatacctggctaattcttttac----------------ttttttttttgt
                      Gorilla  gaactactggcatatgccatcatacctggctaatatttttac---tttttttttttttttttttttttgt
                    Orangutan  gaactactggcatgtgccatcatacctggctaatttttttac------tttttttgtttgcttgttttgt
                       Gibbon  gaactatcggcatgtgccatcatacctggctaatttttttac---------------tttttttttttgt
                       Rhesus  gaactactggaatgtgccaccttgcctggctaat--ttttac--------------ttttttttttttgt
          Crab-eating macaque  gaactactggcatgtgccaccttgcctggctaat--ttttac----------------ttttttttttgt
                       Baboon  gaactactggcatgtgccaccttgcctggctaat--ttttac------------ttttttttttttttgt
                 Green monkey  gaactactggcatgtgccaccttgcctggctaat--ttttac-----tttttttttttttttttttttgt
             Proboscis monkey  gaactactggcatgtgccaccttgcctggctaat--ttttac-----------tttttttttttttttgt
     Golden snub-nosed monkey  gaactactggcatgtgccaccttgcctggctaat--ttttac------ctttttttttttttttttttgt
                     Marmoset  ggactattggcatgtgccatcctgcctggctaattttttttt-----------tttttttttttttttgt
              Squirrel monkey  ggactattggcatgtgccatcttgcctggctaa-ttttttac-----------tttttttttttttttgt
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  agagacagggtctcactacgttgctcagactggccttgaactcgtgggctcaagagatcctcccttggct
                        Chimp  agagacagggtctcactacgttgctcagactggccttgaactcctgggctcaagagatcctcccttggct
                       Bonobo  agagacagggtctcactacgttgctcagactggccttgaactcctgggctcaagagatcctcccttggct
                      Gorilla  agagacagggtctcactgtgttgctcagactggccttgaactcctgggctcaagagatcctcccttggct
                    Orangutan  agagacagggtctcactacattgctcagactggtcttgaactcctgggctcaagagatcctcccttggct
                       Gibbon  agagacagggtctcactacgtttctcagactggtcttgaactcctgggctcaagaaatcctcccttggct
                       Rhesus  agagacagggtctcactacgttgctcagacgggtcttgaactcctgggctcaagagatcctcccctggct
          Crab-eating macaque  agagacagggtctcactacgttgctcagacgggtcttgaactcctgggctcaagagatcctcccctggct
                       Baboon  agagacagggtctcactacgttgctcagacgggtcttgaactcctgggctcaagagatcctcccctggct
                 Green monkey  agagacaaggtctcactacgttgctcagatgggtcttgaactcctgggctcaagagatcctcccctggct
             Proboscis monkey  agagacagggtctcactacgttgctcagactggtcttgaactcctgggctcaagagatcctcccttggct
     Golden snub-nosed monkey  agagacagggtctcactacgttgctcagactggtcttgaactcctgggctcaagagatcctcccttggct
                     Marmoset  agagacagggtcttactatgttgctcagactggtc-tgaattcctgggcttaagagatcctccctcagct
              Squirrel monkey  agagatagggtcttactatgttgctcagactggtcttgaattcctgggctcaagagatcctccctcagct
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gggtgcagtggctcatgcctgtaatcccagcactttgtgaggtcaaggcaggcagatcacctgaggtcag
                        Chimp  gggtgcagtggctcatgcctgtaatcccagcactttgtgaggccaaggcaggcagatcacctgaggccag
                       Bonobo  gggtgcagtggctcatgcctgtaatcccagcactttgtgaggccaaggcaggcagatcacctgaggtcag
                      Gorilla  gggtgcagtggctcatgcctgtaatcccagcactttgtgaggccaaggcaggcagatcacctgaggtcag
                    Orangutan  gggtacagtggctcatgcctgtaatcccagcactttgtgaggccaaggcaggcagatcacctgaggtcag
                       Gibbon  gggtgcagtggctcatgtctgtaatcccagcactttgtgaggccaaggcaggcagatcacctgaggtcag
                       Rhesus  gggcacggtggctcacgcctgtaatcccagcaatttgggaggccaaggcaggcagataacctgagggcag
          Crab-eating macaque  gggcacggtggctcacgcctgtaatcccagcaatttgggaggccaaggcaggcagataacctgagggcag
                       Baboon  gggcacggtggctcacgcctgtaatcccagcaatttgggaggccaaggcaggcagataacctgagggcag
                 Green monkey  gggcacggtggctcacgcctgtaatgccagcaatttgggaggccaaggcaggcagataacctgagggcag
             Proboscis monkey  gggcatggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggncag
     Golden snub-nosed monkey  gggcacggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgagggcaa
                     Marmoset  gagtgctgtagctcactcctgtaatcccaacactttgggaggccaaggcaggccgataacctgaggtcag
              Squirrel monkey  gagcacagtagctcacacctgtaatcccaacactttgggaggccaaggtgggccgataacctgaggtcag
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gagttcaagaccagcctggtcaacatggcgaaaccccatctctactaaaaatac--aaaaa-----ttag
                        Chimp  gagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacagaaaaa-----ttag
                       Bonobo  gagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacagaaaaa-----ttag
                      Gorilla  gagttcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatac--aaaaa-----ttag
                    Orangutan  gagttcaagaccagcctggtcaacatggtgaaacctcatctctactaaaaatac--aaaaa-----tcag
                       Gibbon  gagttaaagaccagcctggtcaacatggtgaaaccccatctctactaaaaatac--aaaac-----ttag
                       Rhesus  gagtgcaggaccagcctggtcaacatggtgaaacc-catctctactaaaaatac--aaaaa-----ttag
          Crab-eating macaque  gagtgcaggaccagcctggtcaacatggtgaaacc-catctctactaaaaatac--aaaaa-----ttag
                       Baboon  gagtgcaggaccagcctggtcaacatggtgaaacc-catctctactaaaaatac--aaaaa-----ctag
                 Green monkey  gagtgcaagaccagcctggtcaacatggtgaaacc-catctctactaaaaatac--aaaaa-----ttag
             Proboscis monkey  gagttcaagaccagcctggncaacatggtgaaacc-catctctactaaaaatac--aaaaa-----ttag
     Golden snub-nosed monkey  gagttcaagaccagcctggtcaacatggtgaaacc-catctttactaaaaatac--aaaaa-----ttag
                     Marmoset  gagttccagaccagcctggccaacatggtgaaaccccatctctactaaaaatac--aaaaa-----ttag
              Squirrel monkey  gggttccaaaccagcctggccaacatgatgaacgcccatctctactaaaaatac--aaaaaaaaacttag
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ccaggcacagtggcacacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                        Chimp  ctgggtgtggtggagggcacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                       Bonobo  ctgggtgtggtggagggcacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                      Gorilla  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                    Orangutan  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                       Gibbon  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                       Rhesus  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaactt
          Crab-eating macaque  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaactt
                       Baboon  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
                 Green monkey  ccaggcacagtggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactt
             Proboscis monkey  ccaggcacagtggcgcacgcctgtaatcccagctactcaggaggctaaggcaggagaattgcttgaactt
     Golden snub-nosed monkey  ccaggcacagtggcgcacgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaactt
                     Marmoset  ccagggatgatggcactcaactgtaatcccagctactcgggagactgaggcaggagaattgcttgaactc
              Squirrel monkey  ctgggtgtggtggcacatgcctgtagtcccaactactcaggaggctgaggcaggagaacttcttgaaccc
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  gggaggcaggggttgcagtgagccaagatcgtaccgctggacttcagcct-gggtgacagagccagattc
                        Chimp  gggaggcaggggttgcagtgagccaagatcgtaccgctggacttcagcct-gggtgacagagccagattc
                       Bonobo  gggaggcaggggttgcagtgagccaagatcgtaccgctggacttcagcct-gggtgacagagccagattc
                      Gorilla  gggaggcaggggttgcagtgagccaagatcgtactgctggacttcagcct-gggtgacagagccagattc
                    Orangutan  gggaggcagaggttgcagtaagccaagatcgtaccgctggacttcagcct-gggtgacagagccagactc
                       Gibbon  gggaggcagaggttgcagtaagccaagatcataccactggacttcagcct-gggtgacagacccagactc
                       Rhesus  gggaggcagaatttgcagtgagccaagatcacaccactggacttcagtgtggggtgacagagccagactc
          Crab-eating macaque  gggaggcagaatttgcagtgagccaagatcacaccactggacttcagtgtggggtgacagagccagactc
                       Baboon  gggaggcagaagttgcagtgagccaagatcacaccactggacttcagtgtggggtgacagagccagactc
                 Green monkey  gggaggcagaagttgcagtgagccaagatcacaccactggacttcagtctggggtgacagagccagactc
             Proboscis monkey  gggaggcagaagttgtagtgagccaagatcacaccactggacttcagtctagggtgacagagccagactc
     Golden snub-nosed monkey  gggaggcagaagttgtagtgagccaagatcacaccactggacttcagtctagggtgacagatccagactc
                     Marmoset  aggaggtagaggttgtagtgagccaagatcaagccagtacactctagtct-gggtggtagaatgagactg
              Squirrel monkey  aggaggcagagattgcagtgaactgagatcacgccactgcactacagcct-gggcgacagtgcaagactc
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================

                        Human  ttgtctc-aaaaaaaaga-------------------------------------
                        Chimp  ttatccc-aaaaaaaaga-------------------------------------
                       Bonobo  ttatctc-aaaaaaaaga-------------------------------------
                      Gorilla  ttatctc-aaaaaaaaga-------------------------------------
                    Orangutan  ttacctc-aaaaaaaaga-------------------------------------
                       Gibbon  -tatctc-aaaaaaagaa-------------------------------------
                       Rhesus  -tatctc-aaaaaaagga-------------------------------------
          Crab-eating macaque  -tatctc-aaaaaaagga-------------------------------------
                       Baboon  -tatctc-aaaaaaagga-------------------------------------
                 Green monkey  -tatctcaaaaaaaagga-------------------------------------
             Proboscis monkey  -tatctc-aaaaaaaaga-------------------------------------
     Golden snub-nosed monkey  -tatctc-aaaaaaagga-------------------------------------
                     Marmoset  ---tcaa-gaaagaaagaaaggagggagggagggaaggagaaagaaagagaaaga
              Squirrel monkey  ---tgtc-gaaagaaagaaa----------------------------agaaaga
                        Mouse  =======================================================
                          Dog  =======================================================
                   Tree shrew  =======================================================
                     Bushbaby  =======================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  =======================================================

Inserts between block 60 and 61 in window
B D                    Chimp 711bp
B D                Orangutan 4bp
B D                   Gibbon 3bp
B D                   Rhesus 3bp
B D      Crab-eating macaque 3bp
B D                   Baboon 3bp
B D             Green monkey 3bp
B D         Proboscis monkey 3bp
B D Golden snub-nosed monkey 3bp

Alignment block 61 of 231 in window, 32615806 - 32615865, 60 bps 
B D                     Human  aaa-------------------------------------------------aagatagagatcctccct
B D                     Chimp  aaa-------------------------------------------------gagatagagaacctccct
B D                    Bonobo  aaa-------------------------------------------------aagatagagatcctccct
B D                   Gorilla  aaa-------------------------------------------------aagatagagatcctccct
B D                 Orangutan  aga-------------------------------------------------aagaaagagatactcccc
B D                    Gibbon  aga-------------------------------------------------aagaaagagatcctccct
B D                    Rhesus  aga-------------------------------------------------aagaaagggatcctccct
B D       Crab-eating macaque  aga-------------------------------------------------aagaaagggatcctccct
B D                    Baboon  aga-------------------------------------------------aagaaagggatcctccct
B D              Green monkey  aga-------------------------------------------------aagaaagggatcctccct
B D          Proboscis monkey  aga-------------------------------------------------aagaaagggatcctccct
B D  Golden snub-nosed monkey  aga-------------------------------------------------aagaaagggatcctccct
B D                  Marmoset  aaaaaaagaaagaaggaaggaaggaaggagggagggaaggaaggagggaaggaaggaagggtttc-----
B D           Squirrel monkey  aaa-------------------------------------------------aagaaagagtttc-----
B D                     Mouse  ======================================================================
B D                       Dog  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================

                        Human  cttcggcttcccaaagtgctgggattacaggtgtgagcc
                        Chimp  cttcgtcgtcccaaggtgctgggattacaagtttgagcc
                       Bonobo  cttcggcttcccaaagtgctgggattacaggtgtgagcc
                      Gorilla  cttcggcttcccaaagtgctgggattacaggtgtgagcc
                    Orangutan  cttcggcttcccaaagtgctgggattacaggtgtgagcc
                       Gibbon  gttcggcttcccaaagtgctgggattacaggtgtgagcc
                       Rhesus  cttcggcttcccaaagtgctgggattacaggtgcgagcc
          Crab-eating macaque  cttcggcttcccaaagtgctgggattacaggtgcgagcc
                       Baboon  cttcggcttcccaaagtgctgggattacaggtgcgagcc
                 Green monkey  cttcggcttcccaaagtgctgggattacaggtgcgagcc
             Proboscis monkey  cttcagcttcccaaagtgctaggattacaggtgcaagcc
     Golden snub-nosed monkey  cttcggcttcccaaagtgctaggattacaggtgcaagcc
                     Marmoset  --------tttcaaagtgttgggattacaggtgagagcg
              Squirrel monkey  --------ttccaaagtgctgggattacaggtgagagca
                        Mouse  =======================================
                          Dog  =======================================
                   Tree shrew  =======================================
                     Bushbaby  =======================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  =======================================

Alignment block 62 of 231 in window, 32615866 - 32616334, 469 bps 
B D                     Human  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaatagatg
B D                     Chimp  agta-----------------tataggttg--------aaagaat----gggtgtggaaatgaatagatg
B D                    Bonobo  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaatagatg
B D                   Gorilla  actg-----------------tatttattg--------agtgaat----gaatgaacaaatgaatagatg
B D                 Orangutan  accg-----------------tatttgttg--------cgtgaat----gaatgaacaaatgaatagatg
B D                    Gibbon  cctg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaatagatg
B D                    Rhesus  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaacagatg
B D       Crab-eating macaque  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaacagatg
B D                    Baboon  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaacagatg
B D              Green monkey  actg-----------------tatttgtta--------agtgaat----gaatgaacaaatgaacagatg
B D          Proboscis monkey  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaacagatg
B D  Golden snub-nosed monkey  actg-----------------tatttgttg--------agtgaat----gaatgaacaaatgaacagatg
B D                  Marmoset  accgtgcctgacctcattgactatctgttg--------agtgaat----gaatgaacaaatgaatagatg
B D           Squirrel monkey  actgtgcctggcctcactgactatttgttgagtgaacaagtgaat----gaatgaacaaatgaatagatg
B D                   Tarsier  acag-----------------tatttgtta--------aatgaatgaaggaatgagcaaataaagagaca
B D                     Mouse  ======================================================================
B D                       Dog  ======================================================================
B D                Tree shrew  ======================================================================
B D                  Bushbaby  ======================================================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gaagcctgcatgaatgggagggtgaa--ggatggatggagagaagcagagtaaggagccaggagggagag
                        Chimp  gaagcctgcatgaatgggagggtgaa--ggatggatggagagaagcagattaaggagccaggagggagag
                       Bonobo  gaagcctgcatgaatgggagggtgaa--ggatggatggagagaagcagagtaaggagccaggagggagag
                      Gorilla  gaagcctgcatgaatgggagggtgaa--ggatggatggagagaagcagagtaaggagccaggagggatag
                    Orangutan  gaagcccgcatgaatgggagggtgaa--ggatggatggagagaagcagagtaaggagccagaagggagag
                       Gibbon  gaagcctgcatgaatgggagggtgaa--ggatggatgaagagaagcagagtaaggagccagaagggagag
                       Rhesus  gaagcctggatgaatgggagggtgaa--ggatggctgaagagaagcagagtaaggagccagaagggagaa
          Crab-eating macaque  gaagcctggatgaatgggagggtgaa--ggatggctgaagagaagcagagtaaggagccagaagggagaa
                       Baboon  gaagcctggatgaatgggagggtgaa--ggatggctgaagagaagcagagtaaggagccagaagggagaa
                 Green monkey  gaagcctggatgaatgggagcgtgaa--ggatggctggagagaagcagagtaagaagccagaagggagaa
             Proboscis monkey  gaagcctggatgaatgggagggtgaa--gaatgactggagagaagcagagtaaggagccagaagggagag
     Golden snub-nosed monkey  gaagcctggatgaatgggagggtgaa--gaatgactggagagaagcagagtaaggagccagaagggagag
                     Marmoset  g-aagccggatgaatgggagggtgat--ggatggatggagagaaccagagtaaggagccagaagagagag
              Squirrel monkey  gaaagccggatgaatgggagggtgaa--ggatggatggcgagaaccagagt-aggagccagaagagagag
                      Tarsier  gaaggctggatgggcatgggggtggaggggacggactggtggaagcagagtacggagccagaagctgaag
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ggtgagggaaaagctgttttcacagggtggctgaaggtggaggagccattctcaaaggaggtaacatctg
                        Chimp  ggtgagggaaaagctgttttcacacgggggctggaggtggaggagccattctcaaaggaggtaacatctg
                       Bonobo  ggtgagggaaaagctgttttcacacggtggctggaggtggaggagccattctcaaaggaggtaacatctg
                      Gorilla  ggtgagggaaaagctgttttcacagggtggctggaggtggaggagccattctcaaaggaggtaacatctg
                    Orangutan  ggtgagggaaaagctgttttcacagggtggctggaggtggaggagccattctcaaaggaggtaacatctg
                       Gibbon  ggtgagggaaaagctgttttcacagggtggctggaggtggaggagccattctcaaaggaggtaacatctg
                       Rhesus  ggtgagggaaaggctgtttccacagggtggctgggggtggaggagcttttctcaaaggaggtaacatctg
          Crab-eating macaque  ggtgagggaaaggctgtttccacagggtggctgggggtggaggagcttttctcaaaggaggtaacatctg
                       Baboon  ggtgagggaaaggctgtttccacagggtggctgggggtggaggagcttttctcaaaggaggtaacatctg
                 Green monkey  ggtgagggaaaggctgtttccacagggtggctgggggtggaggagcttttctcaaaggaggtaacatctg
             Proboscis monkey  ggtgagggaaaggctgtttccacagggtggctgggggtggaggagccattctcaaaggaggtaacatctg
     Golden snub-nosed monkey  ggtgagggaaaggctgtttccacagggtggctgggggtggtggagccattctcaaaggaggtaacatctg
                     Marmoset  ggtgatggaaaggctgttttcacaaggtggctgcgggt---ggagacattctcaaaggaggtaatatctg
              Squirrel monkey  ggtgatggaaaggctgtttccacaaggtggctgtgggtggaggagacattctcaaaggaggtgatatccg
                      Tarsier  gatgagggccgggct-------------------------------------------------------
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  agaagaatcgggggccatgggctatggctcacgcctgtaatcccagcactttgggaggctgaggcaggag
                        Chimp  agaagaatcgggggccacgggctatggctcacgcctgtaatcccagcactttgggaggctgaggcaggag
                       Bonobo  agaagaatcgggggccacgggctatggctcacgcctgtaatcccagcactttgggaggctgaggcaggag
                      Gorilla  agaagaatcgggggccatgggctgtggctcacgcctgtaatcccggcactttgggaggctgaggcaggag
                    Orangutan  agaagaatcgggggccatgcgctatggctcacgcctgtaatcccagcactttgggaggctgaggcaggag
                       Gibbon  agaagaatcgggggcaatgggctatggctcacgcctataatcccagcactttgggaggctgaggcaggag
                       Rhesus  agaagaattgggggccatggactgtgtctcatgcttgtaatcccagcactttgggaggctgaggcagtag
          Crab-eating macaque  agaagaatcgggggccatggactgtgtctcatgcttgtaatcccagcactttgggaggctgaggcagtag
                       Baboon  agaagaatcaggggccatggactgtgtctcatgcttgtaatcccagcactttgggaggctgaggcagtag
                 Green monkey  agaagaatcgggggccatggactgtggctcatgcttgtaatcccagcactttgggaggctgaggcagtag
             Proboscis monkey  agaagaatcaggggccatggactgtggctcatgcttgtaatcccagcactttgggaggctgaggcagtag
     Golden snub-nosed monkey  agaagaattgggggccatggactgtggctcatgcttgtaatcccagcactttgggaggctgaggcagtag
                     Marmoset  agaagaaccaagggccgtgggctatggctaacacctgtaatcccagcagtttgagaggctgagggaggag
              Squirrel monkey  agaagaatcaggggccatgggctatggcttaca-ctgtaatcccagcactttgggaggctgagggaggag
                      Tarsier  ---------------------tggtggctcatgccagtctttccagcacttcgggagactgaggcgggaa
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gattgtgggaggccagtagtt-agagaccag-ctggacaacatagtgagaccctgcctctac-------a
                        Chimp  gattgcgggaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgcctctac-------a
                       Bonobo  gattgcgggaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgcctctac-------a
                      Gorilla  gattgtgggaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgcctctac-------a
                    Orangutan  gattgccggaggccaggagttaagagaccag-ccggacaacatagtgagaccctacctctac-------a
                       Gibbon  gattgccggaagccaggagtt-agagaccag-ctggacaacatagcgagaccctgcctctac-------a
                       Rhesus  gattgccagaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgtctgtag-------a
          Crab-eating macaque  gattgccagaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgtctgtag-------a
                       Baboon  gattgccagaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgtctgtag-------a
                 Green monkey  gattgccagaggccaggagtt-agagaccag-ctggacaacatagtgagaccctgtctgtag-------a
             Proboscis monkey  gattgccagaggccaggagtt---agaccag-ctggacaacatagtgagaccctgtctgtag-------a
     Golden snub-nosed monkey  gattgccagaggccaggagtt---agaccag-ctggacaacatagtgagaccctgtctgtag-------a
                     Marmoset  gattgccagaggacaagagtt-caagaccag-ctggacaacatagtgagaccctatctctac-------a
              Squirrel monkey  gattgccaaaggacaagagtt-caagaccag-ctggacaacatagcgaaaccctatctctac-------a
                      Tarsier  gattgcttgaggccaggagtg-tggtactagcctgagcaacatagcaaggtcccatctctaccaacaaac
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  aaacatgaaaaagttagctggtcgtactggtgcacacccgtagtcccagatactcaggaggctgaggcaa
                        Chimp  aaacatgaaaaagttagctggtcgtactggtgcacacccgtagtcccagatactcaggaggctgaggcaa
                       Bonobo  aaacatgaaaaagttagctggtcgtactggtgcacacccgtagtcccagatactcaggaggctgaggcaa
                      Gorilla  aaacatgaaaaagttagctggtcgtactggagcacacccatagtcccagatactcaggaggctgaggcaa
                    Orangutan  aaacaggaagaagttagctggtcgtactggtgcacacccgtagtcccagatactcaggaggctgaggcaa
                       Gibbon  aaacatgaaaaacttagctggtcgtactggtgcgcacccgtagtcccagatactcaggaggctgaggcaa
                       Rhesus  aaacatgaaaaagttagctggtcatactggtgcgcacccgtagtcccagatactcaggaggctgaggcag
          Crab-eating macaque  aaacatgaaaaagttagctggtcatactggtgcgcacccgtagtcccagatactcaggaggctgaggcag
                       Baboon  aaacatgaaaaagttagctggtcatactggtgcgcacccgtagtcccagatactcaggaggctgaggcag
                 Green monkey  aaacatgaaaaagttagctggtcatactggtgcgcacccgtagtcccagatactcaggaggctgaggcag
             Proboscis monkey  aaacaggaaaaagttagctggtcatactggtgcgcacccgtagtcccagatactcaggaggctgaggcag
     Golden snub-nosed monkey  aaaaaggaaaaagttagctggtcatactggtgtgcacctgtagtcccagatgctcaggaggctgaggcag
                     Marmoset  aaatatgaaaaagttagccagttgcggtggtgcatacctatagtcccagatactcaggaggctgaggcag
              Squirrel monkey  aaatatgaaaa----aaccagttgtggtgatgcatacctgtagtcccagatactcaggaggctgaggcag
                      Tarsier  aaacgaacaaaaatgagccgggtgtagtgacacacacctatagtcccagctagtt-tgaggctgacgcag
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gaggatcacttgagcccaggagttcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                        Chimp  gaggatcacttgagcccaggagttcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                       Bonobo  gaggatcacttgagcccaggagttcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                      Gorilla  gaggatcacttgagcccaggagttcaaggggctagtgaaccatgattgtgccactgcacctcagcctggg
                    Orangutan  gaggatcacttgagcccaggagttcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                       Gibbon  gggtatcacttgagcccaggagttcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                       Rhesus  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
          Crab-eating macaque  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
                       Baboon  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcaccccagcctagg
                 Green monkey  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcaccccagcctggg
             Proboscis monkey  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcacccaagcctggg
     Golden snub-nosed monkey  gaggatcacttgagcccaggaactcaaggctgcagtgaaccatgattgtgccactgcacccaagcctgga
                     Marmoset  gaagatcacttgagcccaggatttcaaggctgcagtgaaccatgattatacagcttcaccccagcctggg
              Squirrel monkey  gaagatcacttgagcccaggagttcaaggctgcagtgaaccatgattatacagctgcaccccagcctggg
                      Tarsier  gaggattgtttgagcccatgagttggagtctgcagtgagctatgatcgcaccactgccctctagcctggg
                        Mouse  ======================================================================
                          Dog  ======================================================================
                   Tree shrew  ======================================================================
                     Bushbaby  ======================================================================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ccacagagcaataccctgt
                        Chimp  ccacagagcaataccctgt
                       Bonobo  ccacagagcaataccctgt
                      Gorilla  ccacagagcaataccttgt
                    Orangutan  ccacagagcaataccctgt
                       Gibbon  ccacagagcaataccctgt
                       Rhesus  ctacagagcaataccctgt
          Crab-eating macaque  ctacagagcaataccctgt
                       Baboon  ctacagagcaataccctgt
                 Green monkey  ctacagagcaataccctgt
             Proboscis monkey  ctacagagcaataccctgt
     Golden snub-nosed monkey  ctacagagcaataccctgt
                     Marmoset  ccacagagaaataccctgt
              Squirrel monkey  ccacagagcaatatcctgt
                      Tarsier  caacagagcaagaccctgt
                        Mouse  ===================
                          Dog  ===================
                   Tree shrew  ===================
                     Bushbaby  ===================
                  Mouse lemur  NNNNNNNNNNNNNNNNNNN

Alignment block 63 of 231 in window, 32616335 - 32616352, 18 bps 
B D                     Human  ctgaa------------agagagagagag----------------a
B D                     Chimp  ctgaa------------agagagagagag----------------a
B D                    Bonobo  ctgaa------------agagagagagag----------------a
B D                   Gorilla  ctgaa------------aaagagagagag----------------a
B D                 Orangutan  ctgaa------------aaagagagagaa----------------a
B D                    Gibbon  ccgaa------------aaagagagagag----------------a
B D                    Rhesus  ctgaa--------------agagagagag----------------a
B D       Crab-eating macaque  ctgaa--------------agagagagag----------------a
B D                    Baboon  ctgaaagagagagagagagagagagagag----------------a
B D              Green monkey  ctgaa------------agagagagagag----------------a
B D          Proboscis monkey  cagag------agagagagagagagagag----------------a
B D  Golden snub-nosed monkey  cagag------agagagaaagagagagag----------------a
B D                  Marmoset  ctcaa------------agagagagagac----------------a
B D           Squirrel monkey  ctcag------------agagagagagactgagagtaagagagaga
B D                   Tarsier  cgaaa---------gaaagaaagaaaaag----------------a
B D                Tree shrew  ctaga------------aggaagggaaag----------------a
B D                     Mouse  ==============================================
B D                       Dog  ==============================================
B D                  Bushbaby  ==============================================
B D               Mouse lemur  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 64 of 231 in window, 32616353 - 32616358, 6 bps 
B D                     Human  -gagag--a
B D                     Chimp  -gagag--a
B D                    Bonobo  -gagag--a
B D                   Gorilla  -gagag--a
B D                 Orangutan  -gagag--a
B D                    Gibbon  -cagag--a
B D                    Rhesus  -gagag--a
B D       Crab-eating macaque  -gagag--a
B D                    Baboon  -gagag--a
B D              Green monkey  -gagag--a
B D          Proboscis monkey  -gagagaca
B D  Golden snub-nosed monkey  -gagag--a
B D                  Marmoset  -gagag--a
B D           Squirrel monkey  -gagag--a
B D                   Tarsier  -gagag--a
B D                  Bushbaby  -gagaa--g
B D                Tree shrew  tgatga---
B D                     Mouse  =========
B D                       Dog  =========
B D               Mouse lemur  NNNNNNNNN

Inserts between block 64 and 65 in window
B D                    Chimp 2bp
B D                   Bonobo 2bp
B D                  Gorilla 14bp
B D                Orangutan 6bp
B D                   Gibbon 34bp
B D                   Rhesus 5bp
B D      Crab-eating macaque 5bp
B D                   Baboon 5bp
B D             Green monkey 5bp
B D         Proboscis monkey 5bp
B D Golden snub-nosed monkey 5bp
B D                 Marmoset 23bp
B D          Squirrel monkey 25bp
B D                  Tarsier 16bp

Alignment block 65 of 231 in window, 32616359 - 32616391, 33 bps 
B D                     Human  -aagcatcaag-ggggaggaggga-ggggcct--------tgtg
B D                     Chimp  -aagcatcaag-ggggaggaggga-ggggcct--------tgtg
B D                    Bonobo  -aagcatcaag-ggggaggaggga-ggggcct--------tgtg
B D                   Gorilla  -aagcatcaag-ggggaggaggga-ggggcct--------tgtg
B D                 Orangutan  -aagcatcaag-ggggaggaggga-ggggcct--------agtg
B D                    Gibbon  -gagcatcaag-ggggaggaggga-ggggcct--------tgtg
B D                    Rhesus  -aagcatcaagagggaaggaggga-agggcct--------tgtg
B D       Crab-eating macaque  -aagcatcaagagggaaggaggga-agggcct--------tgtg
B D                    Baboon  -aagcattaagagggaaggaggaa-agggcct--------tgtg
B D              Green monkey  -aagcatcaagagggaaggaggga-agggcct--------tgtg
B D          Proboscis monkey  -aagcatcaagagggaaggaggga-agggcct--------tgtg
B D  Golden snub-nosed monkey  -aagcatcaagagggaaggaggga-agggcct--------tgtg
B D                  Marmoset  -aagaatcaggaggggaggaggga-gggacct--------tgtg
B D           Squirrel monkey  -aagaatcaggaggcgaggaggga-gggaact--------tgtg
B D                   Tarsier  -tgatatgaag-actgaggtggag-gaggctt--------ggta
B D               Mouse lemur  -aagagtcgagaaggcaggaggga-gcggcta--------tgtg
B D                  Bushbaby  ----aatcatgaaggcaggagggagggggcca--------tgtg
B D                Tree shrew  aggctgtttagacaggggaattga-ggagcctcagcagggtggg
B D                     Mouse  ============================================
B D                       Dog  ============================================

Alignment block 66 of 231 in window, 32616392 - 32616834, 443 bps 
B D                     Human  ag-------cgct-------------------gg------------------------------------
B D                     Chimp  ag-------cgct-------------------gg------------------------------------
B D                    Bonobo  ag-------cgct-------------------gg------------------------------------
B D                   Gorilla  ag-------cgct-------------------gg------------------------------------
B D                 Orangutan  ag-------cgct-------------------gg------------------------------------
B D                    Gibbon  ag-------cact-------------------gg------------------------------------
B D                    Rhesus  ag-------cgct-------------------gg------------------------------------
B D       Crab-eating macaque  ag-------cgct-------------------gg------------------------------------
B D                    Baboon  ag-------cgct-------------------gg------------------------------------
B D              Green monkey  ag-------cgct-------------------gg------------------------------------
B D          Proboscis monkey  ag-------cgct-------------------gg------------------------------------
B D  Golden snub-nosed monkey  ag-------cgct-------------------gg------------------------------------
B D                  Marmoset  ag-------tgct-------------------gg------------------------------------
B D           Squirrel monkey  ag-------tgct-------------------gg------------------------------------
B D                   Tarsier  agaaggggacact-------------------tgagaagagtcaggaaggcagaaggcatgagggttcca
B D               Mouse lemur  gg-------tgtc-------------------tg------------------------------------
B D                  Bushbaby  gg-------catc-------------------ca------------------------------------
B D                Tree shrew  gg-------cacttgacagggacatggagacagg------------------------------------
B D                       Dog  ag-------catc-------------------ta------------------------------------
B D                     Mouse  ======================================================================

                        Human  g---gcagaggacacggcattgcaaggatctgccccacct------ggggccagca----caca------
                        Chimp  g---gcagaggacacggcattgcaaggatctgccccacct------ggggccagca----caca------
                       Bonobo  g---gcagaggacacggcattgcaaggatctgccccacct------ggggccagca----caca------
                      Gorilla  g---gcagaggacacggcattgcaaggacctgccccacct------ggggccagca----caca------
                    Orangutan  g---gcagaagacacagcattgcaaggacctgccccacct------ggggccagca----caca------
                       Gibbon  g---gcagaggacacggcattgcaaggacctgccccaccg------agggccagca----caca------
                       Rhesus  g---gcagaggacactgcattgcaaggacctgccccaccc------agggccagca----caca------
          Crab-eating macaque  g---gcagaggacactgcattgcaaggacctgccccaccc------agggccagca----caca------
                       Baboon  g---gcagaggacactgcattgcaaggacctgccccaccc------agggccagca----caca------
                 Green monkey  g---gcagaggacactgcattgcaaggacctgccccaccc------agggccagca----caca------
             Proboscis monkey  g---gcagaggacactgcattgcaaggacct-ccccaccc------ggggccagca----caca------
     Golden snub-nosed monkey  g---gcagaggacactgcattgcaaggacctgccccaccc-----tggggccagca----caca------
                     Marmoset  g---gcagaggacactgcaccgcacggacctgccccaccc------agggccggca----caca------
              Squirrel monkey  g---gcagaggacactgcattgcatggacctgccccaccc------agggccagca----caca------
                      Tarsier  g---gcagaggtcactatattgcagcaacccacaccaccc----agagagccagca----gaca------
                  Mouse lemur  g---gcagaggacggtgcattacaaggacccacgccaccc------agggctggca----caca------
                     Bushbaby  ggcagcagaagacactgggttgcaatgacccaccccactt------ggggccagca----caca------
                   Tree shrew  a---acagaggacatcaaattgcaatgat-----tcacat------gggactggga----caca------
                          Dog  a---gcagagggatgagcattgccacctccccccccccccccaggagaggccagcaccagcacaccctgc
                        Mouse  ======================================================================

                        Human  -----tctggtacaaccaaaggacgcaggagtaagcaaggaggagcagggtactggagaggccagcaagg
                        Chimp  -----tctagtacaaccaaaggacgcaggagtaagcaaggaggagcagggtactggagaggccagcaagg
                       Bonobo  -----tctagtacaaccaaaggacggaggagtaagcaaggaggagcagggtactggagaggccagcaagg
                      Gorilla  -----tctggtacaaccagaggacgcaggagtaagcaaggaggagcagggtactggagaggccagcaagg
                    Orangutan  -----tctggtacaaccagaggacgcaggagtaagcgaggagaagcaaggtactggagaggccagcaagg
                       Gibbon  -----tctggtacaaccagaggacgcaggagtaagtgaggaggagcagggtactggagaggccagcaagg
                       Rhesus  -----tctggtacatccaaaggatacaggagtaagcgaggaggagcagggtactggagaggccagcaagg
          Crab-eating macaque  -----tctggtacatccaaaggatacaggagtaagcgaggaggagcagggtactggagaggccagcaagg
                       Baboon  -----tctggtacatccaaaggatacaggagtaagcgaggaggagcagggtactggagaggccagcaagg
                 Green monkey  -----tctggtacatccagaggatacaggagtaagcgaggaggagtagggtactggagaggccagcaagg
             Proboscis monkey  -----tctggtacatccagaggatacaggagtaagcgaggaggagcagggtactggagaggccagcaagg
     Golden snub-nosed monkey  -----tctggtacatccagaggatacaggagtaagcgaggaggagcagggtactggagaggccagcaagg
                     Marmoset  -----cctggtatgtccggaggatgcaggaaggagtgaggaggagcaggggactggagaggccagtaagg
              Squirrel monkey  -----cctggcacgcccagaggacacaggaaggagtgaggaggagca-gggactggagaggccagtaagg
                      Tarsier  -----cctgacacgt-caaaggacacaggagggagtgaggagaagctgggcgccggaggt----------
                  Mouse lemur  -----cctggcatgcccaaaggacacacgagggatcggg-------------------------------
                     Bushbaby  -----cctggcatgtccaacaggcacaagagggattgga-------------------------------
                   Tree shrew  -----cctggtacatccaaaggactcaggaaggcattagaaggagcgtggggtcggggaggcctgagaag
                          Dog  cctgccccagtgtgttccaaggccatgagagt----gagaaggagcacaggaccagaaagagtggtgagg
                        Mouse  ======================================================================

                        Human  ggtca-gcagagcccctgggccctggggctggtcccaagggtgataggaggagccaatcaagggcctggg
                        Chimp  ggtca-gcagagcccctgggccctggggctggtcccaagggtgataggaggagccaatcaagggcctggg
                       Bonobo  ggtca-gcagagcccctgggccctggggctggtcccaagggtgataggaggagccaatcaagggcctggg
                      Gorilla  ggtca-gcagagcccctgggccctgggtctggtcccaagggtgataggaggagccaatcaagggcctggg
                    Orangutan  ggtca-gcagagcccctgggccctggggctggtcccaagggtgataggaggagccaatcaagggcctggg
                       Gibbon  ggtca-gcagag-ccctgtgccctggggctggtcccaagggtgatgggaggagccagtcaagggcctggg
                       Rhesus  gatca-acagagccccagggccctgaggctggtcccaagggtgatgggaggagccagtcgagggcctggg
          Crab-eating macaque  gatca-acagagccccggggccctgaggctggtcccaagggtgatgggaggagccagtcgagggcctggg
                       Baboon  gatca-acagagccctggggccctgaggctggtcccaagggtgatgggaggagccagtcgagggcctggg
                 Green monkey  gatca-acagagccccggggccctgaggctggtcccaagggtgatgggaggagccagtcgagggcctggg
             Proboscis monkey  gatca-acagagccccggggccctggggctggtcccaagggtgatgggaggagccagtcgagggcctggg
     Golden snub-nosed monkey  gatca-acagagccccggggccctggggctggtcccaagggtgatgggaggagccagtcgagggcctggg
                     Marmoset  ggtca-gcagagctcctg----------------ccaggggcaatgggaggagccattcgagggcctggg
              Squirrel monkey  ggtca-gcagagcccgtg----------------ccagaggcgatgggaggagccatttgcagtcctgag
                      Tarsier  -------ccgagctcctga--ccctgggctggtcccgagtgtga---gagcagccgtgtgagggcctggg
                  Mouse lemur  -------cagagcccgtggacc-cggggctggtcccaaggatgatgggaggaggcttcggagggc-gtgg
                     Bushbaby  -------cagagcctgaggactatggggctagtcccaagggtgatgagaggaggtttacaagggctgggg
                   Tree shrew  ggtag-gca-aacctgtgggccctggagggtatcgctagcaag-taggaggagccttccatgggc-tgtg
                          Dog  ggccaggcagggcctgtggactctgcagcttgtcccaagtgtgatggggggagcctttt--gtgccctga
                        Mouse  ======================================================================

                        Human  acagagcaaga-ctttgtc------tgactttctcccctg--------agtagaacataagttcagggag
                        Chimp  acagagcaaga-atttgtc------tgactttctcccctg--------agtagaacataagttcagggag
                       Bonobo  acagagcaaga-ctttgtc------tgactttctcccctg--------agtagaacataagttcagggag
                      Gorilla  acagagcaaga-ctttgtc------tgactttctcccctg--------agtagaacgtaagttcagggag
                    Orangutan  acagagcaagg-ctttgtc------tgactttctcccctg--------agtagaacgtaagttcagggag
                       Gibbon  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
                       Rhesus  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
          Crab-eating macaque  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
                       Baboon  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
                 Green monkey  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
             Proboscis monkey  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
     Golden snub-nosed monkey  acagagcaagg-ctttgtc------tgtctttctcccctg--------agtagaacataagttcagggag
                     Marmoset  acagagcaagg-ctttgt----------ctttctcccctg--------agtagaacataa----------
              Squirrel monkey  acagagcaagg-ctttgt----------ctttctcccctg--------agtagaacataa----------
                      Tarsier  gcagagcaagg--tgtgt-------tggttttctcccctg--------agtgaaacgtaagcccagtgag
                  Mouse lemur  gcagagcaagg-ctgccgc------tgcttgtctccactg---------------------ctcagcgag
                     Bushbaby  gcagagcaagt-cttcatc------tgtttttctccactg---------------------ctccgtgag
                   Tree shrew  acagaggaaggacttggtt------tggttttctccccca--------gcttgggcagaagcttggtgag
                          Dog  acagagcgtgg-ctttgtccacttgttccttccccctctgccccccgcaggggaatataggcccagtgag
                        Mouse  ======================================================================

                        Human  ggcaggccctggt--gt-cttgtttgtggttgtgtat---gcacctagtgc-------------------
                        Chimp  ggcaggccctggt--gt-cttgtttgtggttgtgtat---gcacctagtgc-------------------
                       Bonobo  ggcaggccctggt--gt-cttgtttgtggttgtgtat---gcacctagtgc-------------------
                      Gorilla  ggcaggccctggt--gt-cttgtttgtggttgtgtat---gcacgtagtgc-------------------
                    Orangutan  ggcaagccctggt--gt-cttgtttgtggctgtgtatgcagcacctagtgt-------------------
                       Gibbon  ggcaggccctggt--gt-cttgtttgtggctgtgtatgcagcacctcgtgc-------------------
                       Rhesus  ggcaggccctggt--gt-cctgtgtgtggctgtgtatgcagcacctagtgc-------------------
          Crab-eating macaque  ggcaggccctggt--gt-cctgtgtgtggctgtgtatgcagcacctagtgc-------------------
                       Baboon  ggcaggccctggt--gt-cctgtgtgtggctgtgtatgcagcacctagtgc-------------------
                 Green monkey  ggcaggccctggt--gt-cctgtgtgtggctgtgtatgcagcacctagtgc-------------------
             Proboscis monkey  ggcaggccctggt--gt-cccgtgtgtggctgtgtatgcagcacctagt-c-------------------
     Golden snub-nosed monkey  ggcaggccctggt--gt-cccgtgtgtggctgtgtatgcagcacctagt-c-------------------
                     Marmoset  ----------ggt--gt-cttgtttgtggctgtgtatgcagcacctagtgc-------------------
              Squirrel monkey  ----------ggt--gt-cctgtttgtggctgtgtatgcagcacctagtgc-------------------
                      Tarsier  gcccagttctggt--ctgcctgttcacagctgtgtccttggcacccagtgc-------------------
                  Mouse lemur  ggca-gccctggtccgt-ctt-------gctcagtgcccggcacctagagc-------------------
                     Bushbaby  ggcaggccctgct----------------ctctgtacacagcacctagagcaggggtcctcaaacttttt
                   Tree shrew  ggcaggccctggccggc-cttggctgctg-tgtgcatgcagcacctagtac-------------------
                          Dog  ggcaggcccgggtctgc-cctgcttgctgctgtgtatgtggcacctgtggc-------------------
                        Mouse  ======================================================================

                        Human  ----------------------------------------t---------------------gagttcag
                        Chimp  ----------------------------------------t---------------------gagttcag
                       Bonobo  ----------------------------------------t---------------------gagttcag
                      Gorilla  ----------------------------------------t---------------------gagttcag
                    Orangutan  ----------------------------------------t---------------------gagttcag
                       Gibbon  ----------------------------------------t---------------------gagttcag
                       Rhesus  ----------------------------------------t---------------------gagttcag
          Crab-eating macaque  ----------------------------------------t---------------------gagttcag
                       Baboon  ----------------------------------------t---------------------gagttcag
                 Green monkey  ----------------------------------------t---------------------gagttcaa
             Proboscis monkey  ----------------------------------------t---------------------gagttcaa
     Golden snub-nosed monkey  ----------------------------------------t---------------------gagttcaa
                     Marmoset  ----------------------------------------t---------------------gagttgag
              Squirrel monkey  ----------------------------------------t---------------------gagttgag
                      Tarsier  ----------------------cgctcagcgtggcgactgt---------------------ggatccag
                  Mouse lemur  ----------------------cactcaaagtactgaacgt---------------------gagtt-gg
                     Bushbaby  aaactgggggccagttcactgtccctcagaccgctggagggtcagactgcaggcctcgggaagagtt-gg
                   Tree shrew  ----------------------ctttcgtcgtagtaaatca---------------------gggctccg
                          Dog  ----------------------cactcacaggactagctgt---------------------gggctggg
                        Mouse  ======================================================================

                        Human  ----tgagtgg---------------------------------------------cagagtggattcta
                        Chimp  ----tgagtgg---------------------------------------------cagagtggattcta
                       Bonobo  ----tgagtgg---------------------------------------------cagagtggattcta
                      Gorilla  ----tgagtgg---------------------------------------------cagagtggatccta
                    Orangutan  ----tgagtgg---------------------------------------------cagagtggattcta
                       Gibbon  ----tgagtgg---------------------------------------------c-gagtggattcta
                       Rhesus  ----tgagtgg---------------------------------------------cagagtggattcta
          Crab-eating macaque  ----tgagtgg---------------------------------------------cagagtggattcta
                       Baboon  ----tgagtgg---------------------------------------------cagagtggattcta
                 Green monkey  ----tgagtgg---------------------------------------------cagagtggattcta
             Proboscis monkey  ----tgagtgg---------------------------------------------cagagtggattcta
     Golden snub-nosed monkey  ----tgagtgg---------------------------------------------cagagtggattcta
                     Marmoset  ----tgagtgg---------------------------------------------cagagtggattcta
              Squirrel monkey  ----tgagtgg---------------------------------------------cagagtggattcta
                      Tarsier  ----ggggcga---------------------------------------------c-----tgaccctg
                  Mouse lemur  ----tgagtga---------------------------------------------ctgagtggacccca
                     Bushbaby  ctgctaagcgggatgggcagtggcagcaaaaacacccggtgggctggataaatgtcctaggtgggccgca
                   Tree shrew  ----cgagtgg---------------------------------------------ccgagt-gacacag
                          Dog  ----ggagcag---------------------------------------------ctgagttgtcctta
                        Mouse  ======================================================================

                        Human  -------caccggcgtcgga---ggacacatc-------------tgccacccctgctc-----cccaat
                        Chimp  -------caccagcgtcgga---ggacatatc-------------tgccacccctgctc-----cccaat
                       Bonobo  -------caccggcgtcgga---ggacacatc-------------tgccacccctgctc-----cccagt
                      Gorilla  -------caccagcgtcgga---ggacacatc-------------tgccacccctgctc-----cccaat
                    Orangutan  -------caccagcgtcaga---ggacacatc-------------tgccacccctgctc-----cccagt
                       Gibbon  -------caccggcgtctga---ggacacatc-------------tgccacccctgctc-----cccagt
                       Rhesus  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccaat
          Crab-eating macaque  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccaat
                       Baboon  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccaat
                 Green monkey  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccaat
             Proboscis monkey  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccagt
     Golden snub-nosed monkey  -------cactggcatctga---ggacacatc-------------tgccacccctactc-----cccagt
                     Marmoset  -------catgggcatctga---gggcacatc-------------tgccacccctgctc-----cccgat
              Squirrel monkey  -------catgggcatctga---gggcacatc-------------tgccacccctgctc-----cccgat
                      Tarsier  -------caacgtcgt-tgg---gggcacatc-------------tgtcacactcactc-----------
                  Mouse lemur  -------cacaggtttccaa---ggagacatc-------------cgccacccccgctc-----cctgac
                     Bushbaby  tgtggcccacggggccgtagtttgaagacgcctggtgagtggctgtgtgaaccttgcacaggtgcctgct
                   Tree shrew  -------cgcaggcatcgaa---ggggacatc-------------tgccgtccctgctc-----cctggc
                          Dog  -------tgcaggcatctaa---ggagacatc-------------cgccatctct-cgc-----cctgat
                        Mouse  ======================================================================

                        Human  acaacccatttcctg--cccagcagtcacaggggttcttctaaaacaggtggtgtctttcctctgcttca
                        Chimp  acagcccatttcctg--cccagcagtcacaggggttcctctaaaaccggtggtgtctttcctctgcttca
                       Bonobo  acagcccatttcctg--cccagcagtcacaggggttcttctaaaaccggtggtgtctttcctctgcttca
                      Gorilla  acagcccatttcctg--cccagcagtcacaggggttcttctaaaacaggtggtgtctttcctctgcttca
                    Orangutan  acagcccatttcctg--cccagcagtcacaggggttcttctaaaacaggtggtgtctttcctctgcttca
                       Gibbon  acagcccatttcctg--cccagcagtcacaggggttcttctaaaacaggtggtgtctttcctctgcttca
                       Rhesus  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacaggtggtgtctttcctctgcttca
          Crab-eating macaque  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacaggtggtgtctttcctctgcttca
                       Baboon  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacaggtggtgtctttcctctgcttca
                 Green monkey  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacaggtggtgtctttcctttgcttca
             Proboscis monkey  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacgggtggtgtctttcctctgcttca
     Golden snub-nosed monkey  acagcccatttcctg--cccagcagtcacaggagttcttctaaaacaggtggtgtctttcctctgcttca
                     Marmoset  atagcccccttcctg--cccagcagttgcaggggttcttctaaaactgatgttatctttcctctgcttcg
              Squirrel monkey  acag-cccctgcctg--cccagcagtctcaggggttcttctaaaacagatggtatctttcctctgctttg
                      Tarsier  -----ccgtttccca--cccagcagccccagggctgctttcaaagcaggtcacatcctttccctgcttac
                  Mouse lemur  acagcccctttccca--ctcagcagccacagggggtcatttaaaacaggtcatgtccttcttctacttaa
                     Bushbaby  atagcccatcccccacccccagtagccacggagattcttttgaaacaggtcatgtctttcccctgcttag
                   Tree shrew  acagcccatctcaca--cccagcag-cacggggactctt-tcaaacaggtcacgtcctccctctgcttaa
                          Dog  acagcccattttcca--cctagt----------------------cgggtcataccttccttctgcttaa
                        Mouse  ======================================================================

                        Human  agccctctcc
                        Chimp  agccctctcc
                       Bonobo  agccctctcc
                      Gorilla  agccctctcc
                    Orangutan  agccctctcc
                       Gibbon  agccctctcc
                       Rhesus  agccctctcc
          Crab-eating macaque  agccctctcc
                       Baboon  agccctctcc
                 Green monkey  agccctctcc
             Proboscis monkey  agccctctcc
     Golden snub-nosed monkey  agccctctcc
                     Marmoset  atccctccca
              Squirrel monkey  agccctccca
                      Tarsier  agccctctc-
                  Mouse lemur  aaccctcccc
                     Bushbaby  aagcctcccc
                   Tree shrew  agccctccca
                          Dog  aaccctccct
                        Mouse  ==========

Inserts between block 66 and 67 in window
B D              Mouse lemur 1953bp

Alignment block 67 of 231 in window, 32616835 - 32616839, 5 bps 
B D                     Human  tggct
B D                     Chimp  tggct
B D                    Bonobo  tggct
B D                   Gorilla  tggct
B D                 Orangutan  tggct
B D                    Gibbon  tggct
B D                    Rhesus  cagct
B