Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 605 in window, 79585843 - 79585851, 9 bps 
B D                     Human  aaa----c--t----c-----aag-------------------
B D                     Chimp  aaa----c--t----c-----aag-------------------
B D                   Gorilla  aaa----c--t----c-----aag-------------------
B D                 Orangutan  aaa----c--t----c-----aag-------------------
B D                    Gibbon  caa----c--t----c-----aag-------------------
B D                    Rhesus  aaa----c--t----c-----aag-------------------
B D       Crab-eating macaque  aaa----c--t----c-----aag-------------------
B D                    Baboon  aaa----c--t----c-----aag-------------------
B D              Green monkey  aaa----c--t----c-----aag-------------------
B D                  Marmoset  aaa----c--t----c-----aag-------------------
B D           Squirrel monkey  aaatcacc--t----c-----aag-------------------
B D                  Bushbaby  tca----c--tccaac-----aag-------------------
           Chinese tree shrew  tga----g--t----c-----aag-------------------
B D                  Squirrel  taa----a--a----c-----aag-------------------
       Lesser Egyptian jerboa  tca----g--a----c-----aag-------------------
                 Prairie vole  tca----a--a----c-----aag-------------------
B D           Chinese hamster  tca----a--a----c-----aag-------------------
               Golden hamster  cc-----a--a----c-----aag-------------------
B D                     Mouse  tca----a--a----c-----aag-------------------
B D                       Rat  tca----a--a----c-----aag-------------------
B D            Naked mole-rat  tga----a--a----c-----aag-------------------
B D                Guinea pig  tga----a--a----c-----aag-------------------
                   Chinchilla  tga----a--a----c-----aag-------------------
             Brush-tailed rat  tga----a--a----c-----aag-------------------
B D                    Rabbit  taa----a--a----c-----aag-------------------
B D                      Pika  t-c----a--a----c-----agg-------------------
B D                       Pig  taa----a--a----c-----gag-------------------
B D                    Alpaca  taa----a--a----c-----aag-------------------
               Bactrian camel  taa----a--a----c-----aag-------------------
B D                   Dolphin  tca----a--a----c-----aag-------------------
                 Killer whale  tca----a--a----c-----aag-------------------
             Tibetan antelope  taa----a--a----c-----aag-------------------
B D                       Cow  taa----a--a----c-----aag-------------------
B D                     Sheep  tga----a--a----c-----aag-------------------
                Domestic goat  tga----a--a----c-----aag-------------------
B D                     Horse  taa----c--a----c-----aag-------------------
B D          White rhinoceros  taa----c--a----c-----aag-------------------
B D                       Cat  tca----a--a----c-----gag-------------------
B D                       Dog  cga----a--a----c-----aag-------------------
B D                   Ferret   cga----a--a----c-----aag-------------------
B D                     Panda  cga----a--a----c-----gag-------------------
               Pacific walrus  cga----a--a----c-----aag-------------------
                 Weddell seal  cga----a--a----c-----aag-------------------
             Black flying-fox  taa----a--a----c-----aag-------------------
B D                   Megabat  taa----a--a----c-----aag-------------------
                Big brown bat  taa----c--a----c-----aag-------------------
         David's myotis (bat)  tga----c--a----c-----aag-------------------
B D                  Microbat  taa----c--a----c-----aag-------------------
B D                  Hedgehog  tag----a--a----c-----aag-------------------
B D                     Shrew  aga----acca----c-----aag-------------------
              Star-nosed mole  tga----a--a----c-----aag-------------------
B D                  Elephant  tca----a--a----c-----aag-------------------
          Cape elephant shrew  tca----a--a----c-----aag-------------------
B D                   Manatee  tta----a--a----c-----aag-------------------
             Cape golden mole  tca----a--a----c-----aag-------------------
B D                    Tenrec  tcg----a--a----c-----aag-------------------
                     Aardvark  tcc----a--a----c-----agg-------------------
B D                 Armadillo  cga----a--a----c-----aag-------------------
B D                   Opossum  tga----a--a----tgaatgaaa-------------------
B D           Tasmanian devil  tga----a--a----tgaatgaag-------------------
B D                   Wallaby  tga----a--a----tgaatatag-------------------
  D              Saker falcon  ---------------------aaa-------------------
  D       Collared flycatcher  ---------------------aaa-------------------
  D    White-throated sparrow  ---------------------aaa-------------------
B D       Medium ground finch  ---------------------aaa-------------------
B D               Zebra finch  ---------------------aaa-------------------
           Tibetan ground jay  ---------------------aaa-------------------
B D                Budgerigar  ---------------------aaa-------------------
  D             Scarlet macaw  ---------------------aaa-------------------
  D              Mallard duck  ---------------------aaa-------------------
B D        American alligator  ---------------------aaata-----------------
  D           Green seaturtle  ----------------------aa-----ctcttactcaagta
  D            Painted turtle  ----------------------aa--cccctcttactcaagta
  D  Chinese softshell turtle  ----------------------aa--cctctttctctc-agta
  D    Spiny softshell turtle  ----------------------aa--cctctttctgtc-agta
B D                Coelacanth  ===========================================
                 Spotted gar  ===========================================
B D                    Turkey  ===========================================
B D                   Chicken  ===========================================
    Mexican tetra (cavefish)  ===========================================
B D             X. tropicalis  ===========================================
  D               Rock pigeon  ===========================================
B D                    Lizard  ===========================================
  D          Peregrine falcon  ===========================================
  D                    Parrot  ===========================================
B D                  Platypus  ===========================================

Inserts between block 1 and 2 in window
  D             Saker falcon 1bp
  D      Collared flycatcher 1bp
  D   White-throated sparrow 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 1bp
B D               Budgerigar 1bp
  D            Scarlet macaw 1bp
  D             Mallard duck 1bp

Alignment block 2 of 605 in window, 79585852 - 79585855, 4 bps 
B D                     Human  caca
B D                     Chimp  caca
B D                   Gorilla  caca
B D                 Orangutan  caca
B D                    Gibbon  caca
B D                    Rhesus  caca
B D       Crab-eating macaque  caca
B D                    Baboon  caca
B D              Green monkey  caca
B D                  Marmoset  caca
B D           Squirrel monkey  caca
B D                  Bushbaby  caca
           Chinese tree shrew  caca
B D                  Squirrel  cgca
       Lesser Egyptian jerboa  caca
                 Prairie vole  caca
B D           Chinese hamster  caca
               Golden hamster  caca
B D                     Mouse  caca
B D                       Rat  caca
B D            Naked mole-rat  caca
B D                Guinea pig  caca
                   Chinchilla  caca
             Brush-tailed rat  caca
B D                    Rabbit  caca
B D                      Pika  caca
B D                       Pig  caca
B D                    Alpaca  caca
               Bactrian camel  caca
B D                   Dolphin  caca
                 Killer whale  caca
             Tibetan antelope  caca
B D                       Cow  caca
B D                     Sheep  caca
                Domestic goat  caca
B D                     Horse  caca
B D          White rhinoceros  caca
B D                       Cat  caca
B D                       Dog  caca
B D                   Ferret   caca
B D                     Panda  caca
               Pacific walrus  caca
                 Weddell seal  caca
             Black flying-fox  caca
B D                   Megabat  caca
                Big brown bat  caca
         David's myotis (bat)  caca
B D                  Microbat  caca
B D                  Hedgehog  caca
B D                     Shrew  caca
              Star-nosed mole  caca
B D                  Elephant  caca
          Cape elephant shrew  caca
B D                   Manatee  caca
             Cape golden mole  caca
B D                    Tenrec  caca
                     Aardvark  caca
B D                 Armadillo  caca
B D                   Opossum  tgca
B D           Tasmanian devil  taca
B D                   Wallaby  ttca
B D                  Platypus  caca
B D                Coelacanth  ====
  D    Spiny softshell turtle  ----
                 Spotted gar  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
  D    White-throated sparrow  ====
    Mexican tetra (cavefish)  ====
B D             X. tropicalis  ====
  D            Painted turtle  ----
B D        American alligator  ----
  D             Scarlet macaw  ====
B D                Budgerigar  ====
  D               Rock pigeon  ====
  D       Collared flycatcher  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D                    Parrot  ====
  D           Green seaturtle  ----
  D  Chinese softshell turtle  ----

Alignment block 3 of 605 in window, 79585856 - 79585863, 8 bps 
B D                     Human  tgcaaatc
B D                     Chimp  tgcaaatc
B D                   Gorilla  tgcaaatc
B D                 Orangutan  tgcaaatc
B D                    Gibbon  tgcaaatc
B D                    Rhesus  tgcaaatc
B D       Crab-eating macaque  tgcaaatc
B D                    Baboon  tgcaaatc
B D              Green monkey  tgcaaatc
B D                  Marmoset  tgcaaatc
B D           Squirrel monkey  tgcaaatc
B D                  Bushbaby  tgcaaatc
           Chinese tree shrew  tgcaaatc
B D                  Squirrel  tgcaaatc
       Lesser Egyptian jerboa  tgcaaatc
                 Prairie vole  tgcacatg
B D           Chinese hamster  tgcatatc
               Golden hamster  tgcatatt
B D                     Mouse  tgcatatc
B D                       Rat  tgcatatc
B D            Naked mole-rat  tgcaaatc
B D                Guinea pig  tgcgaatc
                   Chinchilla  tgcaaatc
             Brush-tailed rat  tgcaaatc
B D                    Rabbit  tgcagatc
B D                      Pika  tgcagatc
B D                       Pig  tgcaaatc
B D                    Alpaca  tgcaaatc
               Bactrian camel  tgcagatc
B D                   Dolphin  tgcaaatc
                 Killer whale  tgcaaatc
             Tibetan antelope  tgcaaatc
B D                       Cow  tgcaaatc
B D                     Sheep  tgcaaatc
                Domestic goat  tgcaaatc
B D                     Horse  tgcaaatt
B D          White rhinoceros  tgcaaatt
B D                       Cat  tgcaaatc
B D                       Dog  tgcaaatc
B D                   Ferret   tgcaaatc
B D                     Panda  tgcaaatc
               Pacific walrus  tgcaaatc
                 Weddell seal  tgcaaatc
             Black flying-fox  tgcaaatc
B D                   Megabat  tgcaaatc
                Big brown bat  tgcaaatc
         David's myotis (bat)  tgcaaatc
B D                  Microbat  tgcaaatc
B D                  Hedgehog  tgcaaatc
B D                     Shrew  tgcaaatc
              Star-nosed mole  tgcaaatc
B D                  Elephant  tgcaaatc
          Cape elephant shrew  tgcaaatc
B D                   Manatee  tgcaaatc
             Cape golden mole  tgcaaatc
B D                    Tenrec  tgcaaatg
                     Aardvark  tgcaagtc
B D                 Armadillo  tgcaaatc
B D                   Opossum  tgcaaagg
B D           Tasmanian devil  tgcaaagg
B D                   Wallaby  tgcaaagg
B D                  Platypus  tgcaaaat
  D              Saker falcon  ggctaat-
  D       Collared flycatcher  tgctaaa-
  D    White-throated sparrow  tgctaat-
B D       Medium ground finch  tgctaat-
B D               Zebra finch  tgctaat-
           Tibetan ground jay  tgctaat-
B D                Budgerigar  tgctaat-
  D             Scarlet macaw  tgct-ac-
  D              Mallard duck  tgctaat-
B D                   Chicken  tgcaaag-
B D                    Turkey  tgcaaag-
B D        American alligator  tgcgaat-
  D           Green seaturtle  tgcaaat-
  D            Painted turtle  tgcaaat-
  D  Chinese softshell turtle  tggaaat-
  D    Spiny softshell turtle  tagaaat-
B D                Coelacanth  ========
                 Spotted gar  ========
    Mexican tetra (cavefish)  ========
B D             X. tropicalis  ========
  D               Rock pigeon  ========
B D                    Lizard  ========
  D          Peregrine falcon  ========
  D                    Parrot  ========

Alignment block 4 of 605 in window, 79585864 - 79585864, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
B D                  Squirrel  a
       Lesser Egyptian jerboa  c
                 Prairie vole  g
B D           Chinese hamster  g
               Golden hamster  g
B D                     Mouse  g
B D                       Rat  g
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                    Rabbit  a
B D                      Pika  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  a
B D          White rhinoceros  a
B D                       Cat  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
B D                  Hedgehog  a
B D                     Shrew  a
              Star-nosed mole  a
B D                  Elephant  a
          Cape elephant shrew  a
B D                   Manatee  a
             Cape golden mole  a
B D                    Tenrec  a
                     Aardvark  a
B D                 Armadillo  a
B D                   Opossum  a
B D           Tasmanian devil  a
B D                   Wallaby  a
  D              Saker falcon  g
  D          Peregrine falcon  a
  D       Collared flycatcher  g
  D    White-throated sparrow  g
B D       Medium ground finch  g
B D               Zebra finch  g
           Tibetan ground jay  g
B D                Budgerigar  g
  D             Scarlet macaw  g
  D              Mallard duck  g
B D                   Chicken  g
B D                    Turkey  g
B D        American alligator  g
  D           Green seaturtle  g
  D            Painted turtle  g
  D  Chinese softshell turtle  a
  D    Spiny softshell turtle  a
B D                Coelacanth  =
                 Spotted gar  =
    Mexican tetra (cavefish)  =
B D             X. tropicalis  =
  D               Rock pigeon  =
B D                    Lizard  =
  D                    Parrot  =
B D                  Platypus  -

Alignment block 5 of 605 in window, 79585865 - 79585870, 6 bps 
B D                     Human  aaaat-c
B D                     Chimp  aaaat-c
B D                   Gorilla  aaaat-c
B D                 Orangutan  aaaat-c
B D                    Gibbon  aaaat-c
B D                    Rhesus  aaagt-c
B D       Crab-eating macaque  aaagt-c
B D                    Baboon  aaagt-c
B D              Green monkey  aaagt-c
B D                  Marmoset  aaatt-c
B D           Squirrel monkey  aaatt-c
B D                  Bushbaby  aaaat-c
           Chinese tree shrew  aaaat-c
B D                  Squirrel  aaaat-c
       Lesser Egyptian jerboa  aaaat-c
                 Prairie vole  aagat-c
B D           Chinese hamster  aaaat-c
               Golden hamster  aagat-c
B D                     Mouse  aagat-c
B D                       Rat  aaggt-c
B D            Naked mole-rat  aaaat-c
B D                Guinea pig  aaaat-c
                   Chinchilla  aaaat-c
             Brush-tailed rat  aaaat-c
B D                    Rabbit  aaaat-c
B D                      Pika  aacat-c
B D                       Pig  gaaat-c
B D                    Alpaca  gaaat-c
               Bactrian camel  gaaat-c
B D                   Dolphin  gaaat-c
                 Killer whale  gaaat-c
             Tibetan antelope  gaaat-c
B D                       Cow  gaaat-c
B D                     Sheep  gaaat-c
                Domestic goat  gaaat-c
B D                     Horse  gaaat-c
B D          White rhinoceros  gaaat-c
B D                       Cat  gaaat-c
B D                       Dog  gaaat-c
B D                   Ferret   gaaat-c
B D                     Panda  gaaat-c
               Pacific walrus  gaaat-c
                 Weddell seal  gaaat-c
             Black flying-fox  gaaat-c
B D                   Megabat  gaaat-c
                Big brown bat  gaaag-c
         David's myotis (bat)  gaaag-c
B D                  Microbat  gaaag-c
B D                  Hedgehog  gaaat-c
B D                     Shrew  gaaat-c
              Star-nosed mole  gaaat-c
B D                  Elephant  aaaat-c
          Cape elephant shrew  aaaac-c
B D                   Manatee  aaaat-c
             Cape golden mole  aaaat-c
B D                    Tenrec  gaaat-c
                     Aardvark  aaaat-c
B D                 Armadillo  aaaat-c
B D                   Opossum  ggat--c
B D           Tasmanian devil  gtaggaa
B D                   Wallaby  atag--a
B D                  Platypus  taaat-c
  D               Rock pigeon  aaaat-t
  D              Saker falcon  aaaat-g
  D          Peregrine falcon  aaaat-a
  D       Collared flycatcher  aaaag-g
  D    White-throated sparrow  aaaag-g
B D       Medium ground finch  aaaag-g
B D               Zebra finch  aaaag-g
           Tibetan ground jay  aaaag-g
B D                Budgerigar  aaaat-g
  D             Scarlet macaw  aaaat-g
  D              Mallard duck  aaagt-g
B D                   Chicken  aaatt-g
B D                    Turkey  aaagc-g
B D        American alligator  aaaat-c
  D           Green seaturtle  aaaat-c
  D            Painted turtle  aaaat-c
  D  Chinese softshell turtle  aaaat-a
  D    Spiny softshell turtle  aaaat-a
B D                    Lizard  aaaaa-c
B D                Coelacanth  =======
                 Spotted gar  =======
    Mexican tetra (cavefish)  =======
B D             X. tropicalis  =======
  D                    Parrot  =======

Alignment block 6 of 605 in window, 79585871 - 79585882, 12 bps 
B D                     Human  aagatg-tacc--------tc
B D                     Chimp  aagatg-tacc--------tc
B D                   Gorilla  aagatg-tacc--------tc
B D                 Orangutan  aatatg-tacc--------tc
B D                    Gibbon  aagagg-tacc--------tc
B D                    Rhesus  aagatg-tacc--------tc
B D       Crab-eating macaque  aagatg-tacc--------tc
B D                    Baboon  aagatg-tacc--------tc
B D              Green monkey  aagatg-tacc--------tc
B D                  Marmoset  aagatg-tacc--------tc
B D           Squirrel monkey  aagatg-tacc--------tc
B D                  Bushbaby  aagagg-tacc--------tc
           Chinese tree shrew  aagagg-tacc--------tc
B D                  Squirrel  aagatg-tacc--------tc
       Lesser Egyptian jerboa  aagggg-tacc--------tg
                 Prairie vole  cacgca-tacc--------tg
B D           Chinese hamster  cacgca-tacc--------tg
               Golden hamster  cacgcg-tacc--------tg
B D                     Mouse  caggcgttacc--------tg
B D                       Rat  caggcgttacc--------tg
B D            Naked mole-rat  aagatg-tacc--------tc
B D                Guinea pig  aagctg-tacc--------tc
                   Chinchilla  aagatg-tacc--------tc
             Brush-tailed rat  aagatg-tacc--------tc
B D                    Rabbit  aagatg-tacc--------tc
B D                      Pika  aagatg-tacc--------tc
B D                       Pig  gagatg-tacc--------tc
B D                    Alpaca  aagatg-tacc--------tc
               Bactrian camel  aagatg-tacc--------tc
B D                   Dolphin  aagatg-tacc--------tc
                 Killer whale  aagatg-tacc--------tc
             Tibetan antelope  aagatg-tacc--------tc
B D                       Cow  aagatg-tacc--------tc
B D                     Sheep  aaggtg-tacc--------tc
                Domestic goat  aaggtg-tacc--------tc
B D                     Horse  aagatg-tacc--------tc
B D          White rhinoceros  aaggtg-tacc--------tc
B D                       Cat  aagatg-tacc--------tc
B D                       Dog  gagatg-tacc--------tc
B D                   Ferret   aagaag-tacc--------tc
B D                     Panda  aagatg-tacc--------tc
               Pacific walrus  aagatg-tacc--------tc
                 Weddell seal  aagatg-tacc--------tc
             Black flying-fox  aagatg-tacc--------tg
B D                   Megabat  aagatg-tacc--------tg
                Big brown bat  aagatg-tacc--------tc
         David's myotis (bat)  aagagg-tacc--------tc
B D                  Microbat  aagatg-tacc--------tc
B D                  Hedgehog  aagatg-tacc--------tc
B D                     Shrew  aagctg-tacc--------tc
              Star-nosed mole  aagatg-tacc--------tc
B D                  Elephant  aagatg-tacc--------tc
          Cape elephant shrew  aagatg-tacc--------tc
B D                   Manatee  aagatg-tacc--------tc
             Cape golden mole  aagatg-tacc--------tc
B D                    Tenrec  aagctg-tacc--------tc
                     Aardvark  aagatg-tacc--------tc
B D                 Armadillo  aagatg-tacc--------tc
B D                   Opossum  aaaaag-tacc--------tt
B D           Tasmanian devil  aaaaag-tacc--------tt
B D                   Wallaby  aaaaag-tacc--------tt
B D                  Platypus  aaaatg-tacc--------tt
  D               Rock pigeon  aaaaca-tacc--------tt
  D              Saker falcon  aaaaca-tacc--------tt
  D          Peregrine falcon  aaaaca-ta-----------t
  D       Collared flycatcher  aaaaca-tacc--------tt
  D    White-throated sparrow  aagaca-tacc--------tt
B D       Medium ground finch  aaaaca-tacc--------tt
B D               Zebra finch  aaaaca-tacc--------tt
           Tibetan ground jay  aaaaca-tacc--------tt
B D                Budgerigar  gaaaca-tacc--------tt
  D             Scarlet macaw  aaaaca-tacc--------tt
  D              Mallard duck  aaaaca-tacc-----ttttt
B D                   Chicken  ggaaca-tacc--------tt
B D                    Turkey  ggaaca-tacc--------tt
B D        American alligator  aaaatg-tacc--------tt
  D           Green seaturtle  aaaatg-tacctttttttttt
  D            Painted turtle  aaaatg-tacc------tttt
  D  Chinese softshell turtle  aaaatg-tacc--------tt
  D    Spiny softshell turtle  aaaatg-tacc--------tt
B D                    Lizard  aaattg-tacc--------tt
B D             X. tropicalis  aagacg-tacc--------t-
B D                Coelacanth  =====================
                 Spotted gar  =====================
    Mexican tetra (cavefish)  =====================
  D                    Parrot  =====================

Inserts between block 6 and 7 in window
  D              Rock pigeon 6bp
  D             Saker falcon 14bp
  D         Peregrine falcon 14bp
  D      Collared flycatcher 5bp
  D   White-throated sparrow 5bp
B D      Medium ground finch 5bp
B D              Zebra finch 5bp
          Tibetan ground jay 5bp
B D               Budgerigar 9bp
  D            Scarlet macaw 8bp
  D             Mallard duck 4bp
B D                  Chicken 4bp
B D                   Turkey 4bp
B D       American alligator 1bp
  D          Green seaturtle 2bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 2bp
  D   Spiny softshell turtle 2bp
B D                   Lizard 1bp

Alignment block 7 of 605 in window, 79585883 - 79585985, 103 bps 
B D                     Human  tttgacttcagg-caactgga--tttt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                     Chimp  tttgacttcagg-caactgga--tttt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                   Gorilla  tttgacttcagg-caactgga--tttt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                 Orangutan  tttgacttcagg-caactgga--tttt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                    Gibbon  tttgacttcagg-caactgga--tttt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                    Rhesus  tttgacttcagg-caactgga--tttt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D       Crab-eating macaque  tttgacttcagg-caactgga--tttt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D                    Baboon  tttgacttcagg-caactgga--tttt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D              Green monkey  tttgacttcagg-caactgga--tttt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D                  Marmoset  tttgacttcagg-caactgga--tatt-ttcacatcactgatgtagaggagtcccttgggtacctgattt
B D           Squirrel monkey  tttgacttcagg-caactgga--tatt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                  Bushbaby  tttgacttcagg-caactgga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattc
           Chinese tree shrew  tttgacttcagg-caactgga--t-tt-ttcacatcactgatgtagaagattcccttgggtacctgattc
B D                  Squirrel  tttgacttcagg-caactgga--c-tt-ttcacatcactgatgtagaggactcccttgggtacctgattt
       Lesser Egyptian jerboa  tttgacttcggg-caactgca--t-ct-ctcacatcactgatgtagaagattcccttggatacctgattc
                 Prairie vole  tttgactccagg-caactgct--t-tg-ctcacatcacagatgtagaagagtcccttgggtacctgattc
B D           Chinese hamster  tttgactccggg-caactgct--t-tg-ttcacatcacagatgtagaagagtcccttgggtacctgattc
               Golden hamster  tttgactccggg-caactgct--t-tg-ctcacatcacagatgtagaagagtcccttgggtacctgattc
B D                     Mouse  ttcagcttcggg-caactgct--t-tt-ctcacatcacagatgtagaggagtcccttgggtacctgattc
B D                       Rat  ttcagcttcggg-caactgct--t-tt-ctcacatcacagatgtagaagagtcccttgggtacctgattc
B D            Naked mole-rat  ttcgacttcagg-aacctgga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctaattt
B D                Guinea pig  ttcgacttcagg-caactgga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctgattc
                   Chinchilla  ttcaacttcagg-caactgga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctgattc
             Brush-tailed rat  ttcggcttcagg-caagtggt--t-tt-ctcacatcactgatgtagaggattcccttgggtacctaattc
B D                    Rabbit  ttggacttcagg-caactgga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                      Pika  tttgacttcagg-caactgga--c-gt-ttcacatcactgatgtagaggattcccttgggtacctgattc
B D                       Pig  ttggacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                    Alpaca  tttgacttcagg-caacagga--t-ttgttcacatcactgatgtagaggattcccttggatacctgattt
               Bactrian camel  tttgacttcagg-caacagga--t-ttgttcacatcactgatgtagaggattcccttgggtacctgattt
B D                   Dolphin  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
                 Killer whale  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
             Tibetan antelope  tttgacttcggg-caacagga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctgattc
B D                       Cow  tttgacttcggg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattc
B D                     Sheep  tttgacttcggg-caacagga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctgattc
                Domestic goat  tttgacttcggg-caacagga--t-tt-ctcacatcactgatgtagaggattcccttgggtacctgattc
B D                     Horse  ttggacttcagg-caacagga--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D          White rhinoceros  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                       Cat  tttgacttcagg-caacaggg--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                       Dog  tttgacttcagg-caacaggg--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                   Ferret   tttgacttcagg-caacaggg--t-tt-ttcacatcactgaggcagaggattcccttgggtacctgattt
B D                     Panda  tttgacttcagg-caacaggg--t-tt-ttcacatcactgatgcagagggttcccttgggtacctgattt
               Pacific walrus  tttgacttcggg-caacaggg--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
                 Weddell seal  tttgacttcggg-caacagcg--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
             Black flying-fox  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                   Megabat  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
                Big brown bat  tttgacttcggg-caacagga--g-ct-ttcacatcactgatgtagaggattcccttgggtacctgattc
         David's myotis (bat)  tttgacttccgg-caacagga--g-tt-ttcacatcactgatgtagaggattcccttgggtacctgattc
B D                  Microbat  tttgacttcggg-caacagga--g-tt-ttcacatcactgatgtagaggattcccttgggtacctgattc
B D                  Hedgehog  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                     Shrew  tttgacttcagg-taacaggattt-tt-ttcacatcactgatgtagaagattcccttgggtacctgattt
              Star-nosed mole  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgtagaggattcccttgggtacctgattt
B D                  Elephant  tttaacttcggg-caacagga--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
          Cape elephant shrew  tttgacttcggg-caatgggc--t-tt-ttcacatcacagatgcagaggattcccttgggtacctgattt
B D                   Manatee  tttgacttcggg-caacagga--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
             Cape golden mole  tttgacttcggg-caacagga--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattt
B D                    Tenrec  tttgacttcagaccaacggga--g-tt-ttcacatcactgaggcagaggattcccttgggtacctgattt
                     Aardvark  tttgacttcagg-caacagga--t-tt-ttcacatcactgatgcagaggattcccttgggtacctgattg
B D                 Armadillo  tttgacttcagg-caacaggg--t-tt-ttcacatcactgaggcagaggattcccttgggtacctgattt
B D                   Opossum  ttggacttc-gg-caacagga--a-tt-ctcacatcactgatgtggaggagtctcttggatacctaattt
B D           Tasmanian devil  ttggacttc-gg-caacagga--a-tt-ctcacatcactgatgtggaggagtctcttggatacctaattt
B D                   Wallaby  ttggacttc-gg-caacagga--a-tt-ctcacatcactgatgtggaggagtctcttggatacctaattt
B D                  Platypus  tttgatgtcagg-caacagga--a-tt-ttcacatcactgatgttgaggattctcttggatacctaattt
  D               Rock pigeon  tttgacctcggg-taacaggg--a-tt-ttcacatcaccgttgtagatgattctctcgggtacctgattt
  D              Saker falcon  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagacgattctctcgggtacctaattt
  D          Peregrine falcon  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagacgattctctcgggtacctaattt
  D       Collared flycatcher  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagaggattctctcgggtacctaattt
  D    White-throated sparrow  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagatgattctctcgggtacctaattt
B D       Medium ground finch  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagatgattctctcgggtacctaattt
B D               Zebra finch  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagatgattctctcgggtacctaattt
           Tibetan ground jay  tttgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagatgattctctcgggtacctaattt
B D                Budgerigar  tttgacctcagg-taaca-gg--a-tt-ttcacatcaccgttgtagacgattctctcgggtacctaattt
  D                    Parrot  tttgacctcagg-taaca-ag--a-tt-ttcacatcaccgttgtagacgattctcttgggtacctaattt
  D             Scarlet macaw  tttgacctcagg-taaca-ag--a-tt-ttcacatcaccgttgtagatgattctcttgggtacctaattt
  D              Mallard duck  tttgacctcagg-taacaggg--a-at-ttcacatcaccgttgtagaagattctctcgggtacctaattt
B D                   Chicken  tctgacctcagg-taacgggg--a-tt-ttcacatcaccgttgtagaagattctctcgggtacctaattt
B D                    Turkey  tctgacctcagg-taacaggg--a-tt-ttcacatcaccgttgtagaagattctctcgggtacctaattt
B D        American alligator  tttgacctcagg-caacaggg--a-tt-ttcacatcaccgatgtagaagattctctcgggtacctaattt
  D           Green seaturtle  ttttacttcagg-caacaggc--a-tt-ttcacatcaccgatgtagaagattctcttgggtacctaattt
  D            Painted turtle  ttttacttcagg-caacaggc--a-tt-ttcacatcaccgatgtagaagattctcttgggtacctaattt
  D  Chinese softshell turtle  ttttacttcagg-caataggg--a-tt-ttcacatcactgatgtggaagattctcttgggtacctaattt
  D    Spiny softshell turtle  ttttacttcagg-caataggg--a-tt-ttcacatcactgatgtggaagattctcttgggtacctaattt
B D                    Lizard  tcagacttcagg-taacagga--a-at-ctcacatcactgatgcagaagagtctcttggatacctaattc
B D             X. tropicalis  ttgaacttcagg-catcaatg--a-tt-ttcacatcaccgttgtggaggattcccgtgtgtacctgggcg
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
    Mexican tetra (cavefish)  ======================================================================

                        Human  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                        Chimp  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                      Gorilla  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                    Orangutan  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                       Gibbon  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                       Rhesus  agt--aaatatatt-aaaataa----acaaagggtaattaataa
          Crab-eating macaque  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                       Baboon  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                 Green monkey  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                     Marmoset  agt--aaatatatt-aaaataa----acaaagggtaattaataa
              Squirrel monkey  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                     Bushbaby  agt--aaatatatc-gagataa----acaaagggtaattaataa
           Chinese tree shrew  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                     Squirrel  agc--aaatatatt-aaaataa----acaaagggtaattaataa
       Lesser Egyptian jerboa  agt--agatatatt-aaaataa----acaaagggtaattaataa
                 Prairie vole  agt--aaatatatt-aaaataa----acaaagggtgattaatat
              Chinese hamster  agt--aaatatatt-aaaataa----acaaagggtgattaatat
               Golden hamster  aat--aaatatatt-aaaataa----acaaagggtggttaatat
                        Mouse  agt--agatatatt-aaaataa----acaaagggtgattaatat
                          Rat  ggt--aaatatatt-aaaataaac--acaaaaggtgattaattt
               Naked mole-rat  agt--aaatacatt-aaaataa----acaaaaggtaattaataa
                   Guinea pig  agt--aaatacatt-aaaataa----acaaaaggtaattaataa
                   Chinchilla  agt--aaatacatt-aaaataa----acaaaaggtaattaataa
             Brush-tailed rat  agt--aaatacatt-aaaataa----acaaaagggaattaataa
                       Rabbit  aat--aaatatatt-aaaataa----acaaagggtaattaataa
                         Pika  aat--aaatatatt-aaaataa----acaaagggtaattaataa
                          Pig  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                       Alpaca  agt--aaatatatt-aaaataa----acaaaggcttgttaataa
               Bactrian camel  agt--aaatatatt-aaaataa----acaaaggcttgttaataa
                      Dolphin  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                 Killer whale  agt--aaatatatt-aaaataa----acaaagggtcattaataa
             Tibetan antelope  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                          Cow  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                        Sheep  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                Domestic goat  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                        Horse  agc--aaatatatt-aaaataa----acaaagggtaattaataa
             White rhinoceros  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                          Cat  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                          Dog  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                      Ferret   agt--aaatatatt-gaaataa----acaaagggtaattaataa
                        Panda  agt--aaatatatt-aaaataa----acaaagggtaattaataa
               Pacific walrus  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                 Weddell seal  agt--aaatatatt-aaaataa----acaaagggtaattaataa
             Black flying-fox  agt--aaatacatt-aaaataa----acaaaggataattaataa
                      Megabat  agt--aaatacatt-aaaataa----acaaaggataattaataa
                Big brown bat  agt--aaatatatt-aaaataa----acaaaggctcattaataa
         David's myotis (bat)  agt--aaatatatt-aaaataa----acaaagggtcattaatag
                     Microbat  agt--aaatatatt-aaaataa----acaaagggtcattaataa
                     Hedgehog  agc--aaatatatt-aaaataa----acaaagggtaattaataa
                        Shrew  agt--aaatatatt-aaaataa----acaaagggtaattaataa
              Star-nosed mole  agt--aaatatatt-aagataa----acaaagggtaattaataa
                     Elephant  tgt--aaataaatt-aaaataa----acaaagggtaattaataa
          Cape elephant shrew  cgt--aaatatatt-aaaataa----acaaagggtaattaataa
                      Manatee  tgt--aaatatatt-aaaataa----acaaagggtaattaataa
             Cape golden mole  tgt--aaatatatt-aaaataa----acaaagggtaattaataa
                       Tenrec  tgt--aaatatatt-aaaataa----acaaagggtcattaataa
                     Aardvark  tgt--aaatatatt-aaaataa----acaaagggtaattaataa
                    Armadillo  agt--aaatatatt-aaaataa----acaaagggtaattaataa
                      Opossum  agc--aaatatatt-aaaataa----acaaaatgaa--taataa
              Tasmanian devil  ggc--aaatatatt-aaaataa----acaaattgaaattaataa
                      Wallaby  ggc--aaatatatt-aaaataa----acaaaatgaaattaataa
                     Platypus  agc--aaatatatt-aaaaaaa----acaaagcttagataataa
                  Rock pigeon  agt--aaatatagt-aaaataa----ac----cgttattaaaag
                 Saker falcon  agt--aaatatatt-aaaataa----ac----cattattaaaag
             Peregrine falcon  agt--aaatatatt-aaaataa----ac----cattattaaaag
          Collared flycatcher  agt--aaatatatt-aaaataa----ac----tattattaaaag
       White-throated sparrow  agt--aaatatatt-aaaataa----ac----tattattaaaag
          Medium ground finch  agt--aaatatatt-aaaataa----ac----tattattaaaag
                  Zebra finch  agt--aaatatatt-aaaataa----ac----tattattaaaag
           Tibetan ground jay  agt--aaatatatt-aaaataa----ac----tattattaaaag
                   Budgerigar  agt--aaatagattaaaaataa----aa----cattattagaat
                       Parrot  agt--agatagattaaaaataa----aa----cattattagaag
                Scarlet macaw  agt--aaatagattaaaaataa----aa----cattattagaag
                 Mallard duck  agt--aaatatatt-aaaatat----gc----cattattaaaag
                      Chicken  agt--aaatacatt-aaaagat----gc----cgttattaaaag
                       Turkey  agt--aaatacatt-aaaatat----gc----tgttattaaaag
           American alligator  agt--aaatatatt-aaaataaacatac----cgttactaagaa
              Green seaturtle  agt--aaatatatt-aaaataa----acaaaacataattaata-
               Painted turtle  agt--aaatatatt-aaaataa----acaaaacataattaata-
     Chinese softshell turtle  agt--aaatatatt-aaaataa----acaaaacataattaata-
       Spiny softshell turtle  agt--aaatatatt-aaaataa----acaaaacataattaata-
                       Lizard  cataaaaatacacc-aaaacaa----acaaagcatgattaataa
                X. tropicalis  agc--atatatatc-aaaagaa----acaagaggtcatgaatat
                   Coelacanth  ============================================
                  Spotted gar  ============================================
     Mexican tetra (cavefish)  ============================================

Inserts between block 7 and 8 in window
  D              Rock pigeon 12bp
  D             Saker falcon 12bp
  D         Peregrine falcon 12bp
  D      Collared flycatcher 12bp
  D   White-throated sparrow 12bp
B D      Medium ground finch 12bp
B D              Zebra finch 12bp
          Tibetan ground jay 12bp
B D               Budgerigar 8bp
  D                   Parrot 182bp
  D            Scarlet macaw 31bp
  D             Mallard duck 12bp
B D                  Chicken 12bp
B D                   Turkey 12bp
B D       American alligator 197bp

Alignment block 8 of 605 in window, 79585986 - 79585991, 6 bps 
B D                     Human  ccacg--a
B D                     Chimp  ccacg--a
B D                   Gorilla  ccacg--a
B D                 Orangutan  ccacg--a
B D                    Gibbon  ccacg--a
B D                    Rhesus  ccacg--a
B D       Crab-eating macaque  ccacg--a
B D                    Baboon  ccacg--a
B D              Green monkey  ccacg--a
B D                  Marmoset  ccacg--a
B D           Squirrel monkey  ccacg--a
B D                  Bushbaby  ccatg--a
           Chinese tree shrew  ccagg--a
B D                  Squirrel  ccatg--a
       Lesser Egyptian jerboa  ccagg--a
                 Prairie vole  ccagg--a
B D           Chinese hamster  ccagg--a
               Golden hamster  ccaag--a
B D                     Mouse  ccagg--a
B D                       Rat  ccagg--a
B D            Naked mole-rat  ccatg--a
B D                Guinea pig  ccacg--a
                   Chinchilla  ccacg--a
             Brush-tailed rat  ctctg--a
B D                    Rabbit  ccatg--a
B D                      Pika  ccatg--a
B D                       Pig  ccacg--a
B D                    Alpaca  ccatg--a
               Bactrian camel  ccatg--a
B D                   Dolphin  ccatg--a
                 Killer whale  ccatg--a
             Tibetan antelope  ccacg--a
B D                       Cow  ccagg--a
B D                     Sheep  ccacg--a
                Domestic goat  ccacg--a
B D                     Horse  ccatg--a
B D          White rhinoceros  ccacg--a
B D                       Cat  ccatg--a
B D                       Dog  ccatg--a
B D                   Ferret   gcacg--a
B D                     Panda  ccgtg--a
               Pacific walrus  ccatg--a
                 Weddell seal  ccatg--a
             Black flying-fox  -catg--a
B D                   Megabat  -catg--a
                Big brown bat  ccacg--c
         David's myotis (bat)  ccacg--c
B D                  Microbat  ccacg--c
B D                  Hedgehog  ccatg--g
B D                     Shrew  ccagg--a
              Star-nosed mole  ccatg--a
B D                  Elephant  ccatg--a
          Cape elephant shrew  ccacg--a
B D                   Manatee  ccacg--a
             Cape golden mole  ccacg--a
B D                    Tenrec  ccatg--c
                     Aardvark  ctgca--a
B D                 Armadillo  ccagg--a
B D                   Opossum  tcatt--a
B D           Tasmanian devil  tcatt--a
B D                   Wallaby  taattaaa
B D                  Platypus  tcgtt--g
  D               Rock pigeon  ttgta--a
  D              Saker falcon  ttgta--a
  D          Peregrine falcon  ttgta--a
  D       Collared flycatcher  tcata--a
  D    White-throated sparrow  tcata--a
B D       Medium ground finch  tcata--a
B D               Zebra finch  tcata--a
           Tibetan ground jay  tcgta--a
  D              Mallard duck  ttgta--a
B D                   Chicken  ttgta--a
B D                    Turkey  ctgta--a
  D           Green seaturtle  ----a--a
  D            Painted turtle  ----a--a
  D  Chinese softshell turtle  ----a--a
  D    Spiny softshell turtle  ----a--a
B D                    Lizard  -------a
B D             X. tropicalis  tcaca--a
B D                Coelacanth  ========
                 Spotted gar  ========
    Mexican tetra (cavefish)  ========
B D        American alligator  ========
  D             Scarlet macaw  ========
B D                Budgerigar  ========
  D                    Parrot  ========

Inserts between block 8 and 9 in window
B D            X. tropicalis 1481bp

Alignment block 9 of 605 in window, 79585992 - 79586000, 9 bps 
B D                     Human  agaa-tgttt
B D                     Chimp  agaa-tgttt
B D                   Gorilla  agaa-tgttt
B D                 Orangutan  agaa-tgttt
B D                    Gibbon  agaa-tgttt
B D                    Rhesus  agaa-tgttt
B D       Crab-eating macaque  agaa-tgttt
B D                    Baboon  agaa-tgttt
B D              Green monkey  agaa-tgttt
B D                  Marmoset  agaa-tgttt
B D           Squirrel monkey  agaa-tgttt
B D                  Bushbaby  agaagtgtta
           Chinese tree shrew  agat-tggtt
B D                  Squirrel  agaa-tgttt
       Lesser Egyptian jerboa  aggg-tgttt
                 Prairie vole  agag-tcttt
B D           Chinese hamster  aaag-tcttt
               Golden hamster  aaag-ccttt
B D                     Mouse  agag-ccttt
B D                       Rat  agag-ccttc
B D            Naked mole-rat  agaa-tgttt
B D                Guinea pig  agaa-tagtt
                   Chinchilla  agaa-tgttt
             Brush-tailed rat  agaa-cattt
B D                    Rabbit  agaa-cgttt
B D                      Pika  aaaa-c----
B D                       Pig  agag-ggctt
B D                    Alpaca  aggg-ggttt
               Bactrian camel  aggg-ggttt
B D                   Dolphin  agag-ggctt
                 Killer whale  agag-ggctt
             Tibetan antelope  agag-ggctt
B D                       Cow  agag-ggctt
B D                     Sheep  agag-ggctt
                Domestic goat  agag-ggctt
B D                     Horse  aaaa-ggttt
B D          White rhinoceros  agag-ggttt
B D                       Cat  agaa-ggttt
B D                       Dog  agaa-ggttt
B D                   Ferret   agaa-ggttt
B D                     Panda  agaa-ggttt
               Pacific walrus  agaa-ggttt
                 Weddell seal  agaa-ggttt
             Black flying-fox  agag-gcttt
B D                   Megabat  agag-gcttt
                Big brown bat  agag-ggctt
         David's myotis (bat)  agag-ggtgt
B D                  Microbat  agag-ggttt
B D                  Hedgehog  agaa-ggttt
B D                     Shrew  agag-ggttt
              Star-nosed mole  agag-gggtt
B D                  Elephant  tgag-tgttt
          Cape elephant shrew  agac-tgttg
B D                   Manatee  tgag-tgttt
             Cape golden mole  agag-tgttt
B D                    Tenrec  aggg-ggttt
                     Aardvark  agag-tgctt
B D                 Armadillo  agag-gggtt
B D                   Opossum  aaac-atttt
B D           Tasmanian devil  aaac-atttt
B D                   Wallaby  aaac-atttt
B D                  Platypus  a-at-ttttt
  D               Rock pigeon  aaca-tgt--
  D              Saker falcon  aaca-tgtct
  D          Peregrine falcon  aaca-tgtct
  D       Collared flycatcher  agcc-tgtct
  D    White-throated sparrow  agcc-tgtct
B D       Medium ground finch  agcc-tgtct
B D               Zebra finch  agcc-tgtct
           Tibetan ground jay  agcc-tgtct
  D              Mallard duck  aaca-tgt--
B D                   Chicken  aaca-tgt--
B D                    Turkey  aacg-cgt--
  D           Green seaturtle  gaaa-ttt--
  D            Painted turtle  gaat-ttt--
  D  Chinese softshell turtle  acat-ttt--
  D    Spiny softshell turtle  taat-ttt--
B D                    Lizard  gacg-ttctt
B D                Coelacanth  ==========
                 Spotted gar  ==========
    Mexican tetra (cavefish)  ==========
B D             X. tropicalis  ==========
B D        American alligator  ==========
  D             Scarlet macaw  ==========
B D                Budgerigar  ==========
  D                    Parrot  ==========

Inserts between block 9 and 10 in window
  D              Rock pigeon 926bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp
  D      Collared flycatcher 4bp
  D   White-throated sparrow 4bp
B D      Medium ground finch 4bp
B D              Zebra finch 187bp
          Tibetan ground jay 4bp
  D             Mallard duck 962bp
B D                  Chicken 6652bp
B D                   Turkey 15462bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp

Alignment block 10 of 605 in window, 79586001 - 79586001, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                  Squirrel  c
       Lesser Egyptian jerboa  g
                 Prairie vole  g
B D           Chinese hamster  t
               Golden hamster  g
B D                     Mouse  g
B D                       Rat  g
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  c
                Domestic goat  t
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                  Hedgehog  c
B D                     Shrew  c
              Star-nosed mole  c
B D                  Elephant  c
          Cape elephant shrew  c
B D                   Manatee  c
             Cape golden mole  c
B D                    Tenrec  c
                     Aardvark  c
B D                 Armadillo  c
B D                   Opossum  c
B D           Tasmanian devil  c
B D                   Wallaby  c
B D                  Platypus  c
B D                    Lizard  t
B D                      Pika  -
B D                Coelacanth  =
  D    Spiny softshell turtle  =
                 Spotted gar  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D             X. tropicalis  =
  D            Painted turtle  =
B D        American alligator  =
  D             Scarlet macaw  =
B D                Budgerigar  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D                    Parrot  =
  D           Green seaturtle  =
  D  Chinese softshell turtle  =

Inserts between block 10 and 11 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp

Alignment block 11 of 605 in window, 79586002 - 79586003, 2 bps 
B D                     Human  -aa
B D                     Chimp  -aa
B D                   Gorilla  -aa
B D                 Orangutan  -aa
B D                    Gibbon  -aa
B D                    Rhesus  -aa
B D       Crab-eating macaque  -aa
B D                    Baboon  -aa
B D              Green monkey  -aa
B D                  Marmoset  -aa
B D           Squirrel monkey  -aa
B D                  Bushbaby  -aa
           Chinese tree shrew  -aa
B D                  Squirrel  -aa
       Lesser Egyptian jerboa  -aa
                 Prairie vole  -aa
B D           Chinese hamster  -aa
               Golden hamster  -ga
B D                     Mouse  -aa
B D                       Rat  -aa
B D            Naked mole-rat  -aa
B D                Guinea pig  -aa
                   Chinchilla  -aa
             Brush-tailed rat  -aa
B D                    Rabbit  -gt
B D                       Pig  -aa
B D                    Alpaca  -aa
               Bactrian camel  -aa
B D                   Dolphin  -aa
                 Killer whale  -aa
             Tibetan antelope  -aa
B D                       Cow  -aa
B D                     Sheep  -aa
                Domestic goat  -aa
B D                     Horse  -aa
B D          White rhinoceros  -aa
B D                       Cat  -aa
B D                       Dog  -aa
B D                   Ferret   -aa
B D                     Panda  -ga
               Pacific walrus  -aa
                 Weddell seal  -aa
             Black flying-fox  -aa
B D                   Megabat  -aa
                Big brown bat  -aa
         David's myotis (bat)  -aa
B D                  Microbat  -aa
B D                  Hedgehog  -aa
B D                     Shrew  -aa
              Star-nosed mole  -aa
B D                  Elephant  -aa
          Cape elephant shrew  -aa
B D                   Manatee  -aa
             Cape golden mole  -aa
B D                    Tenrec  -aa
                     Aardvark  -aa
B D                 Armadillo  -ta
B D                   Opossum  -aa
B D           Tasmanian devil  -aa
B D                   Wallaby  -aa
B D                  Platypus  -aa
  D              Saker falcon  ca-
  D          Peregrine falcon  ca-
  D           Green seaturtle  -a-
  D            Painted turtle  -a-
  D  Chinese softshell turtle  -a-
  D    Spiny softshell turtle  -a-
B D                    Lizard  -a-
B D                      Pika  ---
B D                Coelacanth  ===
                 Spotted gar  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D              Mallard duck  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
    Mexican tetra (cavefish)  ===
B D             X. tropicalis  ===
B D        American alligator  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
  D               Rock pigeon  ===
  D       Collared flycatcher  ===
B D       Medium ground finch  ===
  D                    Parrot  ===

Inserts between block 11 and 12 in window
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp
B D                   Lizard 1bp

Alignment block 12 of 605 in window, 79586004 - 79586010, 7 bps 
B D                     Human  gaacag-t
B D                     Chimp  gaacag-t
B D                   Gorilla  gaacag-t
B D                 Orangutan  gaacag-t
B D                    Gibbon  gaacag-t
B D                    Rhesus  gaacag-t
B D       Crab-eating macaque  gaacag-t
B D                    Baboon  gaacag-c
B D              Green monkey  gaacag-t
B D                  Marmoset  gaacag-t
B D           Squirrel monkey  gaacag-t
B D                  Bushbaby  ggacag-t
           Chinese tree shrew  ggacag-t
B D                  Squirrel  ggacag-t
       Lesser Egyptian jerboa  ggacaa-t
                 Prairie vole  ggacag-t
B D           Chinese hamster  ggacag-t
               Golden hamster  ggacag-t
B D                     Mouse  ggacag-t
B D                       Rat  ggacag-c
B D            Naked mole-rat  ggacag-t
B D                Guinea pig  ggacag-t
                   Chinchilla  ggacag-t
             Brush-tailed rat  ggacag-t
B D                    Rabbit  gtacag-t
B D                       Pig  ggacag-t
B D                    Alpaca  ggacag-t
               Bactrian camel  ggacag-t
B D                   Dolphin  ggacag-t
                 Killer whale  ggacag-t
             Tibetan antelope  ggacag-c
B D                       Cow  ggacag-c
B D                     Sheep  ggacag-c
                Domestic goat  ggacag-c
B D                     Horse  ggacag-t
B D          White rhinoceros  gcacag-c
B D                       Cat  ggacag-t
B D                       Dog  ggacag-t
B D                   Ferret   ggacag-t
B D                     Panda  ggacag-t
               Pacific walrus  ggacag-t
                 Weddell seal  ggacag-t
             Black flying-fox  ggacag-t
B D                   Megabat  ggacag-t
                Big brown bat  agacag-t
         David's myotis (bat)  agacag-a
B D                  Microbat  agacag-t
B D                  Hedgehog  ggacag-c
B D                     Shrew  ggacag-t
              Star-nosed mole  ggacag-t
B D                  Elephant  ggacag-t
          Cape elephant shrew  cgacag-c
B D                   Manatee  ggagagtt
             Cape golden mole  ggacag-c
B D                    Tenrec  gg------
                     Aardvark  ggacag-t
B D                 Armadillo  ggacag-t
B D                   Opossum  agacat-t
B D           Tasmanian devil  agacat-t
B D                   Wallaby  agacat-c
B D                  Platypus  aaatat-c
  D              Saker falcon  -----c-t
  D          Peregrine falcon  -----c-t
  D       Collared flycatcher  tgccac-t
  D    White-throated sparrow  tgccac-t
B D       Medium ground finch  tgccac-t
           Tibetan ground jay  tgccac-t
B D                Budgerigar  -aacat-t
  D             Scarlet macaw  tgccac-t
  D           Green seaturtle  --acac-t
  D            Painted turtle  --acac-t
  D  Chinese softshell turtle  --acac-a
  D    Spiny softshell turtle  ----ac-a
B D                    Lizard  --aagc-t
B D                      Pika  --------
B D                Coelacanth  ========
                 Spotted gar  ========
B D                    Turkey  ========
B D                   Chicken  ========
  D              Mallard duck  ========
B D               Zebra finch  ========
    Mexican tetra (cavefish)  ========
B D             X. tropicalis  ========
B D        American alligator  ========
  D               Rock pigeon  ========
  D                    Parrot  ========

Inserts between block 12 and 13 in window
  D          Green seaturtle 7bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 7bp
  D   Spiny softshell turtle 2bp

Alignment block 13 of 605 in window, 79586011 - 79586019, 9 bps 
B D                     Human  atgctacag
B D                     Chimp  atgctacag
B D                   Gorilla  atgctacag
B D                 Orangutan  atgctacag
B D                    Gibbon  atgctacag
B D                    Rhesus  atgctacag
B D       Crab-eating macaque  atgctacag
B D                    Baboon  atgctacag
B D              Green monkey  atgctacag
B D                  Marmoset  atgctacag
B D           Squirrel monkey  atgctacag
B D                  Bushbaby  aagctaaag
           Chinese tree shrew  acgttaaag
B D                  Squirrel  acgttaatg
       Lesser Egyptian jerboa  atgttcaag
                 Prairie vole  acgtgcaag
B D           Chinese hamster  atgtgcaag
               Golden hamster  atgtgcaag
B D                     Mouse  atgtacagg
B D                       Rat  atgtgcatg
B D            Naked mole-rat  gtgttaaag
B D                Guinea pig  atgttaaag
                   Chinchilla  aagttaaag
             Brush-tailed rat  atgttaaag
B D                    Rabbit  atgctaaag
B D                      Pika  atgttgcag
B D                       Pig  atgttcaag
B D                    Alpaca  atgctaaag
               Bactrian camel  atgctaaag
B D                   Dolphin  atgttcaag
                 Killer whale  atgttcaag
             Tibetan antelope  atgttcaag
B D                       Cow  atgttcaag
B D                     Sheep  atgttcaag
                Domestic goat  atgttcaag
B D                     Horse  atattaaag
B D          White rhinoceros  atgttaaag
B D                       Cat  acgtcaaag
B D                       Dog  atgttaaag
B D                   Ferret   atgttcaag
B D                     Panda  atgttaaag
               Pacific walrus  atgttaaag
                 Weddell seal  ttgttaaag
             Black flying-fox  atgttaaag
B D                   Megabat  atgttaaag
                Big brown bat  atgttaaag
         David's myotis (bat)  atgttcaag
B D                  Microbat  aagttcaag
B D                  Hedgehog  atgtaaaag
B D                     Shrew  ctgctcaag
              Star-nosed mole  atgttaaag
B D                  Elephant  accctaatg
          Cape elephant shrew  atgctgagg
B D                   Manatee  atgttaatg
             Cape golden mole  atgattatg
B D                    Tenrec  ------gta
                     Aardvark  gtgctaacg
B D                 Armadillo  atgttaaag
B D                   Opossum  atgtaaatg
B D           Tasmanian devil  atgtaaatg
B D                   Wallaby  atgtaaatg
B D                  Platypus  gtgttttaa
  D              Saker falcon  atagtacag
  D          Peregrine falcon  atagtacag
  D       Collared flycatcher  atggtacag
  D    White-throated sparrow  atggtacag
B D       Medium ground finch  atggtacag
           Tibetan ground jay  atggtacag
B D                Budgerigar  ataaaacac
  D             Scarlet macaw  atggtacag
  D           Green seaturtle  atgtcact-
  D  Chinese softshell turtle  atgtcaca-
B D                    Lizard  aagctgca-
B D                Coelacanth  =========
  D    Spiny softshell turtle  =========
                 Spotted gar  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D              Mallard duck  =========
B D               Zebra finch  =========
    Mexican tetra (cavefish)  =========
B D             X. tropicalis  =========
  D            Painted turtle  =========
B D        American alligator  =========
  D               Rock pigeon  =========
  D                    Parrot  =========

Inserts between block 13 and 14 in window
  D             Saker falcon 5bp
  D         Peregrine falcon 5bp
  D      Collared flycatcher 135bp
  D   White-throated sparrow 135bp
B D      Medium ground finch 135bp
          Tibetan ground jay 135bp
B D                   Lizard 1bp

Alignment block 14 of 605 in window, 79586020 - 79586020, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
           Chinese tree shrew  g
B D                  Squirrel  g
       Lesser Egyptian jerboa  g
                 Prairie vole  g
B D           Chinese hamster  g
               Golden hamster  g
B D                     Mouse  g
B D                       Rat  g
B D            Naked mole-rat  g
B D                Guinea pig  g
                   Chinchilla  g
             Brush-tailed rat  g
B D                    Rabbit  g
B D                      Pika  a
B D                       Pig  g
B D                    Alpaca  a
               Bactrian camel  g
B D                   Dolphin  g
                 Killer whale  g
             Tibetan antelope  g
B D                       Cow  g
B D                     Sheep  g
                Domestic goat  g
B D                     Horse  g
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  g
         David's myotis (bat)  g
B D                  Microbat  g
B D                  Hedgehog  g
B D                     Shrew  g
              Star-nosed mole  g
B D                  Elephant  g
          Cape elephant shrew  g
B D                   Manatee  g
             Cape golden mole  g
B D                    Tenrec  g
                     Aardvark  g
B D                 Armadillo  g
B D                   Opossum  g
B D           Tasmanian devil  g
B D                   Wallaby  g
B D                  Platypus  t
  D              Saker falcon  g
  D          Peregrine falcon  g
B D                Budgerigar  g
B D                Coelacanth  =
  D    Spiny softshell turtle  =
                 Spotted gar  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D             X. tropicalis  =
  D            Painted turtle  =
B D        American alligator  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D                    Parrot  =
  D           Green seaturtle  -
  D  Chinese softshell turtle  -

Inserts between block 14 and 15 in window
  D             Saker falcon 899bp
  D         Peregrine falcon 906bp

Alignment block 15 of 605 in window, 79586021 - 79586021, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                  Squirrel  c
       Lesser Egyptian jerboa  c
                 Prairie vole  t
B D           Chinese hamster  c
               Golden hamster  t
B D                     Mouse  t
B D                       Rat  t
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                      Pika  c
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
             Tibetan antelope  c
B D                       Cow  c
B D                     Sheep  c
                Domestic goat  c
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                  Hedgehog  c
B D                     Shrew  c
              Star-nosed mole  c
B D                  Elephant  c
          Cape elephant shrew  c
B D                   Manatee  c
             Cape golden mole  t
B D                    Tenrec  t
                     Aardvark  c
B D                 Armadillo  c
B D                   Opossum  t
B D           Tasmanian devil  t
B D                   Wallaby  t
B D                  Platypus  t
B D                Budgerigar  c
B D                    Lizard  t
B D                Coelacanth  =
  D    Spiny softshell turtle  =
                 Spotted gar  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D             X. tropicalis  =
  D            Painted turtle  =
B D        American alligator  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D                    Parrot  =
  D           Green seaturtle  -
  D  Chinese softshell turtle  -

Inserts between block 15 and 16 in window
B D               Budgerigar 900bp

Alignment block 16 of 605 in window, 79586022 - 79586070, 49 bps 
B D                     Human  ag-cctaact------atc----tat----c-aaaagg-g------caga---------a-ttacaccaa
B D                     Chimp  ag-c----ct------atc----tat----c-aaaagg-g------caga---------a-ttacaccaa
B D                   Gorilla  ag-cctacct------atc----tat----c-aaaagg-g------caga---------a-ttacaccaa
B D                 Orangutan  ag-cctaact------atc----tat----c-aaaagg-g------caga---------a-ttacaccaa
B D                    Gibbon  ag-cctaact------atg----tat----c-aaaagg-g------caga---------a-ttacaccaa
B D                    Rhesus  ag-cctaagt------atc----tat----c-aaaagg-g------caga---------g-ttacaccaa
B D       Crab-eating macaque  ag-cctaact------atc----tat----c-aaaagg-g------caga---------g-ttacaccaa
B D                    Baboon  ag-cctaact------atc----tat----c-aaaagg-g------caga---------g-ttacaccaa
B D              Green monkey  ag-cctaact------atc----tat----c-aaaaag-g------caga---------g-ttacaccaa
B D                  Marmoset  ag-cctaact------atc----ttt----c-agaacg-g------ctga---------g-ttacaccaa
B D           Squirrel monkey  ag-cctaact------atc----ttt----c-agaacc-g------ctga---------g-ttacaccaa
B D                  Bushbaby  ag-cctaact------agc----tct----a-aaaaggaa------aaga---------g-ttagaccca
           Chinese tree shrew  ag-cctagct------atc----tat----g-aaaagg-g------cagc---------g-ttagcccat
B D                  Squirrel  ag-cataact------at------------g-aaaagg-g------caga---------g-ttggaccca
       Lesser Egyptian jerboa  ac-cttaact------atc----tat----g-acaagg--------gata---------g-a----ctac
                 Prairie vole  ag-cttaact------atc----tat----g-gcaagg--------caga---------g-atgg-ctag
B D           Chinese hamster  ag-cttaact------atc----tat----g-acaagg--------caga---------g-atgg-ctaa
               Golden hamster  ag-cttaact------atc----tat----g-acaagg--------caga---------g-acgg-ctaa
B D                     Mouse  ag-cttaact------atc----tgt----g-gtaagg-ac----------------------------a
B D                       Rat  ag-cttaacg------atc----tac----g-gcaagg-acccagacaaa---------c-tgaa-ctaa
B D            Naked mole-rat  ag-cctaact------tcc----tat----g-aaaagg-g------caga---------g-tgggactgc
B D                Guinea pig  ag-cttaact------atc----tat----g-aaaagg-a------caga---------a-ccagactgc
                   Chinchilla  cg-cttaaat------atc----tat----c-gaaagg-g------caga---------g-tcctacagc
             Brush-tailed rat  ag-cttaact------agc----tag----t-aaaagg-a------caga---------a-tcatacttc
B D                    Rabbit  ag-gctgact------ag-----tat----g-gaaagg-g------ccga---------t-gggggctga
B D                      Pika  ag-cctacct------agc----tat----g-gaaaag-g------caga---------g-gtggcttga
B D                       Pig  ag-cctaactacaacgagc----tctgacgg-aacagg-g------cagg---------a-tcagaccca
B D                    Alpaca  ag-cctacct------agc----tat----g-aaaagg-g------caga---------a-tgagaccaa
               Bactrian camel  ag-cctacct------agc----tat----g-aaaagg-g------caga---------a-tgagaccaa
B D                   Dolphin  ag-cctaact------acc----tat----g-aaaagg-g------caga---------a-tgagaccaa
                 Killer whale  ag-cctaact------acc----tat----g-aaaagg-g------caga---------a-tgagaccaa
             Tibetan antelope  cg-cctaact------agc----tat----g-agaagg-g------caga---------a-tgagagcca
B D                       Cow  cg-cctaact------agc----tag----g-agaagg-g------caga---------a-tgagagcca
B D                     Sheep  cg-cctaact------agc----tac----a-agaagg-g------caga---------a-tgagagcca
                Domestic goat  cg-cctaact------agc----tac----g-agaagg-g------caga---------a-tgagagcca
B D                     Horse  ag-cctaact------atc----tat----g-aaaaag-t------caga---------g-ttagaccaa
B D          White rhinoceros  ag-cctaact------gtc----tat----g-aaaaag-g------caga---------g-ttggactaa
B D                       Cat  ag-cctagct------atc----tat----g-aaaaag-g------caga---------a-ttagaccca
B D                       Dog  ag-cctagct------atc----tat----g-aaaaag-g------caga---------a-ttaggccca
B D                   Ferret   ag-cctagct------ctc----tac----g-gataag-g------caga---------a-tgagaccca
B D                     Panda  ag-cctagct------atc----tac----g-aaaaag-g------caga---------a-ttagaccca
               Pacific walrus  ag-cctagct------atc----tat----gaaaaaag-g------caga---------a-ttagaccca
                 Weddell seal  aa-cctagct------atc----tat----gaaaaaag-g------caga---------a-ttagaccca
             Black flying-fox  ag-actaact------atc----tat----g-ataaag-g------caaa---------a-ttagaccaa
B D                   Megabat  ag-actaact------atc----tat----g-ataaag-g------caaa---------a-ttagaccaa
                Big brown bat  ag-cctcact------atc----tat----g-aaaagg-g------cgga---------a-tgagaccaa
         David's myotis (bat)  ag-cctaact------atc----tat----g-aaaagg-g------caga---------a-tgagaccaa
B D                  Microbat  ag-cctaact------atc----tat----g-aaaagg-g------caga---------a-tgggaccaa
B D                  Hedgehog  ag-tgtatct--------------at----g-agaagg-g------caga---------a-tttgt-cca
B D                     Shrew  ag-cctaact------------------------------------ctga---------a-tgcag----
              Star-nosed mole  ag-tctgact------acc----tac----a-aaaaag-a------caga---------a-ttcagctca
B D                  Elephant  ag-cctaact------gac----tat----g-agaagg-a------cagc---------a-ttagaccag
          Cape elephant shrew  at----------------c----tag----g-aggagg-g------cagt---------a-ttggatcag
B D                   Manatee  ag-cctaact------gtctacgtac----g-agaagg-g------cagc---------a-ttagacccg
             Cape golden mole  ac-cgtaact------gtc----taa----g-agaagg-g------cagc---------atttcagcagg
B D                    Tenrec  ac-actaaat------gtct---tat----g-cgtaag-g------cagc---------a-ttaggctgg
                     Aardvark  ag-cctagct------gtc----tag----g-agaagg-g------cagc---------g-ttggaccac
B D                 Armadillo  ag-cctaact------ctc----tat----g-aaaaga-g------caga---------g-ttggagcaa
B D                   Opossum  aaccctaact------a-c----tat----a-tgta---t------caga---------a-ttaatctag
B D           Tasmanian devil  ag-cctaact------g-c----tat----a-tgta---t------caga---------a-ttaatccaa
B D                   Wallaby  tg-cctaatt------g-c----tat----a-tgta---t------caga---------a-ttaatccaa
B D                  Platypus  aa-------t------gcc----tat----c-aactgt-a------ccga---------g-taaaattat
  D           Green seaturtle  ----tttact------gat----att----g-tacaga-g------caga---------a-ctgttctga
  D  Chinese softshell turtle  ----tttgcc------att----att----g-tacaga-g------caga---------a-ctgttctga
B D                    Lizard  ----------------agc----ctt----g-tagaaa-g------caaaaagtcaatta-cggcattag
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================

                        Human  ------aaga-agag--tgat
                        Chimp  ------aaga-agag--tgat
                      Gorilla  ------aaga-agag--tgat
                    Orangutan  ------aaga-agag--tgat
                       Gibbon  ------caga-agag--tgat
                       Rhesus  ------aaga-agag--tgat
          Crab-eating macaque  ------aaga-agag--tgat
                       Baboon  ------aaga-agag--tgat
                 Green monkey  ------aaga-agag--tgat
                     Marmoset  ------aaga-a-ag--tgac
              Squirrel monkey  ------aaga-a-ag--taac
                     Bushbaby  ------aaga-agaa--tgat
           Chinese tree shrew  ------gaga-agag--cgct
                     Squirrel  ------aaga-agat--tgat
       Lesser Egyptian jerboa  ------aaga-aaga--ggat
                 Prairie vole  ------aaga-agcc--caat
              Chinese hamster  ------agga-agaa--caat
               Golden hamster  ------aaga-agaa--caat
                        Mouse  ------gcga-cgaa--cgac
                          Rat  ------aaga-agaa--caac
               Naked mole-rat  ------aaga-aggg--tgat
                   Guinea pig  ------a--a-gaag--tg--
                   Chinchilla  ------aaga-agag--tg--
             Brush-tailed rat  ------a--------------
                       Rabbit  ------aagc-aggg--tggg
                         Pika  ------gaga-caag--tgat
                          Pig  ------gaga-agag--tgat
                       Alpaca  ------aaga-atag--ggat
               Bactrian camel  ------aaga-atag--ggat
                      Dolphin  ------aaga-agag--tgat
                 Killer whale  ------aaga-agag--tgat
             Tibetan antelope  ------aaga-agag--gaat
                          Cow  ------aaga-agag--gaat
                        Sheep  ------aaga-agag--gaat
                Domestic goat  ------aaga-agag--gaat
                        Horse  ------aaga-agag--cgat
             White rhinoceros  ------aaga-agtg--tgat
                          Cat  ------agga-agag--ggat
                          Dog  ------aaga-agag--ggat
                      Ferret   ------agga-agag--ggac
                        Panda  ------aaga-agag--ggac
               Pacific walrus  ------aaga-agag--ggat
                 Weddell seal  ------aaga-agag--ggat
             Black flying-fox  ------aaga-agaa--tgat
                      Megabat  ------aaga-agaa--tgat
                Big brown bat  ------aaga-agag--tgat
         David's myotis (bat)  ------aaga-agag--tgat
                     Microbat  ------aaga-agag--tgat
                     Hedgehog  ------aaga-gtgatttttt
                        Shrew  -------aga-gcca--agct
              Star-nosed mole  ------aaga-agaa--tgat
                     Elephant  ------aagg-agag--ttat
          Cape elephant shrew  ------aagg-agaa--ctac
                      Manatee  ------aaga-agag--ttat
             Cape golden mole  ------aacc-gtaa--tt--
                       Tenrec  ------acga-agaa--ttgc
                     Aardvark  ------aagg-agag--tggc
                    Armadillo  ------aaga-aggg--ttct
                      Opossum  ------atca-aaac--taat
              Tasmanian devil  accaagacca-agac--taat
                      Wallaby  ------acca-agac--taat
                     Platypus  ------ttcacacac--ttat
              Green seaturtle  ------ttgg-atgc--taat
     Chinese softshell turtle  ------ttgg-atgc--tgat
                       Lizard  ------tgag-aaat--aagc
                   Coelacanth  =====================
       Spiny softshell turtle  =====================
                  Spotted gar  =====================
                       Turkey  =====================
                      Chicken  =====================
                 Mallard duck  =====================
           Tibetan ground jay  =====================
                  Zebra finch  =====================
       White-throated sparrow  =====================
     Mexican tetra (cavefish)  =====================
                X. tropicalis  =====================
               Painted turtle  =====================
           American alligator  =====================
                   Budgerigar  =====================
                  Rock pigeon  =====================
          Collared flycatcher  =====================
          Medium ground finch  =====================
             Peregrine falcon  =====================
                 Saker falcon  =====================
                       Parrot  =====================

Inserts between block 16 and 17 in window
  D Chinese softshell turtle 81bp
B D                   Lizard 5bp

Alignment block 17 of 605 in window, 79586071 - 79586079, 9 bps 
B D                     Human  tttgtt----------cca
B D                     Chimp  tttgtt----------cca
B D                   Gorilla  tttgtt----------cca
B D                 Orangutan  tttgtt----------cca
B D                    Gibbon  tttgtt----------cca
B D                    Rhesus  tttgtt----------cca
B D       Crab-eating macaque  tttgtt----------cca
B D                    Baboon  tttgtt----------cca
B D              Green monkey  tttgtt----------cca
B D                  Marmoset  tttgtt----------cca
B D           Squirrel monkey  tttgtt----------cca
B D                  Bushbaby  ttggtt----------tca
           Chinese tree shrew  ttcgtt----------tca
B D                  Squirrel  ttagtt----------cca
       Lesser Egyptian jerboa  ctggtc----------cca
                 Prairie vole  ttggt-----------cta
B D           Chinese hamster  ttgat-----------cta
               Golden hamster  ttggt-----------cta
B D                     Mouse  tcggtc----------cta
B D                       Rat  tcagt-----------gta
B D            Naked mole-rat  ttaatt----------cca
B D                Guinea pig  tcaggg----------cca
                   Chinchilla  ctagtt----------cca
B D                    Rabbit  tgaatc----------ccc
B D                      Pika  gccaat----------cgg
B D                       Pig  gtattc----------ccg
B D                    Alpaca  tcagtt----------cta
               Bactrian camel  tcagtt----------cta
B D                   Dolphin  ttaggt----------cca
                 Killer whale  ttaggt----------cca
             Tibetan antelope  tcaggt----------cca
B D                       Cow  ttaggt----------cca
B D                     Sheep  tcaggt----------cca
                Domestic goat  tcaggt----------cca
B D                     Horse  ttcctt----------cct
B D          White rhinoceros  tttgtt----------cca
B D                       Cat  ttaggt----------tca
B D                       Dog  tt-gct----------cca
B D                   Ferret   ttagct----------ccc
B D                     Panda  tgagct----------cca
               Pacific walrus  ttagct----------ccg
                 Weddell seal  ttagct----------ccg
             Black flying-fox  ttagtt----------cta
B D                   Megabat  ttagtt----------cta
                Big brown bat  ttcgtt----------cca
         David's myotis (bat)  ttcgtt----------cca
B D                  Microbat  ttagtt----------cca
B D                  Hedgehog  tttagt----------cca
B D                     Shrew  tgca---------------
              Star-nosed mole  tttagt----------ttc
B D                  Elephant  tttgtt----------cca
          Cape elephant shrew  ttc-tt----------cca
B D                   Manatee  tttctt----------cca
             Cape golden mole  ----------------ccc
B D                    Tenrec  tgtcta----------cca
                     Aardvark  ttcctt----------cca
B D                 Armadillo  ttagtc----------cct
B D                   Opossum  ttaatt----------tta
B D           Tasmanian devil  ttcatt----------tta
B D                   Wallaby  ttcatt----------tta
B D                  Platypus  ttagttttcatcactgcta
  D           Green seaturtle  ttaatt----------tca
B D                    Lizard  tttgtt----------caa
            Brush-tailed rat  -------------------
B D                Coelacanth  ===================
  D    Spiny softshell turtle  ===================
                 Spotted gar  ===================
B D                    Turkey  ===================
B D                   Chicken  ===================
  D              Mallard duck  ===================
          Tibetan ground jay  ===================
B D               Zebra finch  ===================
  D    White-throated sparrow  ===================
    Mexican tetra (cavefish)  ===================
B D             X. tropicalis  ===================
  D            Painted turtle  ===================
B D        American alligator  ===================
B D                Budgerigar  ===================
  D               Rock pigeon  ===================
  D       Collared flycatcher  ===================
B D       Medium ground finch  ===================
  D          Peregrine falcon  ===================
  D              Saker falcon  ===================
  D                    Parrot  ===================
  D  Chinese softshell turtle  ===================

Inserts between block 17 and 18 in window
  D          Green seaturtle 5bp
B D                   Lizard 2946bp

Alignment block 18 of 605 in window, 79586080 - 79586112, 33 bps 
B D                     Human  tttgcttttggg--------tggt-gg---cctcaaccctgtcaa
B D                     Chimp  tttacttttgtg--------tggt-gg---cctcaaccctgtcaa
B D                   Gorilla  tttgcttttgtg--------tggt-gg---cctcaaccctgtcaa
B D                 Orangutan  tttgcttttgtg--------tggt-gg---cctcaaccctgtcaa
B D                    Gibbon  tttgcttttgcg--------tggt-gg---cctcaaccctgtcaa
B D                    Rhesus  tttgcttttgtg--------tggt-gg---cctcaaccctgccaa
B D       Crab-eating macaque  tttgcttttgtg--------tggt-gg---cctcaaccctgccaa
B D                    Baboon  tttgcttttgtg--------tggt-gg---cctcaaccctgccaa
B D              Green monkey  tttgcttttttg--------tggt-gg---cctcaaccctgccaa
B D                  Marmoset  tttgcttttgtg--------tggt-gg---cctcaaccctgccaa
B D           Squirrel monkey  tttgcttttgtg--------tggt-gg---cttcaaccctgccaa
B D                  Bushbaby  tttgctttggcg--------tcgtggg---cgtcagccctgccag
           Chinese tree shrew  cttg-ttttgca--------gggt-ca---gctcagccctgccag
B D                  Squirrel  cttgcttctgcc--------tggt-gg---cctcagcctagtcag
       Lesser Egyptian jerboa  cttgcttttgct--------gggt-gg---cctcagctccactga
                 Prairie vole  gttgatcttgcg--------tggt-gt---tttcagccctt-tga
B D           Chinese hamster  gttgatcttgca--------ggat-gg---tctcagtcctaccaa
               Golden hamster  gctgatctt---------------------------------caa
B D                     Mouse  gttgatcttgca--------tggt-gg---tcacagccctaccaa
B D                       Rat  gttgatcttgca--------tggt-gg---tctcaaccctaccaa
B D            Naked mole-rat  cttgtttttgca--------tggt-gg---a--cagcccaggcag
B D                Guinea pig  cttgtgtttgca--------tggt-gg---actcagcccagggag
                   Chinchilla  cttgcttttgca--------tggt-gg---actcagccaaggcag
             Brush-tailed rat  -------ttgca--------tgca-ga---actcagcccaggcac
B D                    Rabbit  cttgcttcgcta--------tggt-gg--tcctcagcccagcca-
B D                      Pika  ctagctttggcg--------tggt-gg---ctttagcctagcca-
B D                       Pig  cctgccttggca--------ttct-gt---ctgctgcccc-----
B D                    Alpaca  cttgctttggca--------tcct-gg---cctccgccct-----
               Bactrian camel  cttgctttggca--------tcct-gg---cctccgccct-----
B D                   Dolphin  tttgctttggca--------tcct-gg---tctcagccct-----
                 Killer whale  tttgctttggca--------tcct-gg---tctcagccct-----
             Tibetan antelope  cttgctttggca--------gcct-gg---g-tcagccct-----
B D                       Cow  cttgctttggca--------gcct-gg---tctcagccct-----
B D                     Sheep  cttgctttggca--------gcct-gg---tctcagccct-----
                Domestic goat  cttgctttggca--------gcct-gg---tctcagccct-----
B D                     Horse  cttgctttgaca--------acct-gg---cttcaggcct-----
B D          White rhinoceros  cttgcttggaca--------tcct-gg---cttcagccct-----
B D                       Cat  cttgctttagca--------tcct-gg---cctcagccct-----
B D                       Dog  cttgctttggta--------tcct-gg---cctcagacct-----
B D                   Ferret   cttgctttagca--------tcct-gg---cctcagacct-----
B D                     Panda  cttgctttggta--------tcct-gg---cctcagacct-----
               Pacific walrus  cttgctttggca--------tcct-gg---cctcagacct-----
                 Weddell seal  cttgctttggca--------tcct-gg---cctcagacct-----
             Black flying-fox  cttgctttggca--------tcct-ag---cctcagccct-----
B D                   Megabat  cttgctttggta--------tcct-ag---cctcagccct-----
                Big brown bat  cttgctttggcg--------tccc-gg---cctcagccct-----
         David's myotis (bat)  cttgctttggcg--------tccc-gg---cctcagccct-----
B D                  Microbat  cttgctttggca--------tccc-gg---cctcagccct-----
B D                  Hedgehog  ctt-ctttggtgatc-----tcct-tg---tctcagcctt-----
B D                     Shrew  -----tgtgg---------------gg---cctcagccgg-----
              Star-nosed mole  ctt-ctttggca--------ccct-gg---cttccgccct-----
B D                  Elephant  actgcttttgca--------tcag-ga---cctcagtcct-----
          Cape elephant shrew  ctggcctttgca--------tgac-cg---gcttagcccc-----
B D                   Manatee  attgcttttgca--------tcat-gg---cctcagccct-----
             Cape golden mole  aatgcttttgtt--------tcct-gg---tctcaggctt-----
B D                    Tenrec  acagcttgtgctcttgggcacccc-gg---cctcagccgt-----
                     Aardvark  attgcttctgtg--------tcct-agcctcctcggccct-----
B D                 Armadillo  cctgcttttgca--------tcac-ag---cctcagccct-----
B D                   Opossum  ggacgactaaag--------taat-at---tttcaatact-----
B D           Tasmanian devil  ggacaactcatg--------taat-at---tttcaatgct-----
B D                   Wallaby  ggatgactcagg--------taat-at--cttttaatact-----
B D                  Platypus  gttgttctttta--------attt-tg-----tcaa---------
B D                Coelacanth  =============================================
  D    Spiny softshell turtle  =============================================
                 Spotted gar  =============================================
B D                    Turkey  =============================================
B D                   Chicken  =============================================
  D              Mallard duck  =============================================
          Tibetan ground jay  =============================================
B D               Zebra finch  =============================================
  D    White-throated sparrow  =============================================
    Mexican tetra (cavefish)  =============================================
B D             X. tropicalis  =============================================
  D            Painted turtle  =============================================
B D        American alligator  =============================================
B D                Budgerigar  =============================================
  D               Rock pigeon  =============================================
  D       Collared flycatcher  =============================================
B D       Medium ground finch  =============================================
B D                    Lizard  =============================================
  D          Peregrine falcon  =============================================
  D              Saker falcon  =============================================
  D                    Parrot  =============================================
  D           Green seaturtle  =============================================
  D  Chinese softshell turtle  =============================================

Inserts between block 18 and 19 in window
B D                 Platypus 3220bp

Alignment block 19 of 605 in window, 79586113 - 79586144, 32 bps 
B D                     Human  gccagagg-----a-gggg-------tt-gac-gtggaagggaa---tgg
B D                     Chimp  gccagagg-----a-gggg-------tt-gac-gtggaagggaa---tgg
B D                   Gorilla  gccagagg-----a-gggg-------tt-gac-gtggaagggaa---tgg
B D                 Orangutan  gccagagg-----a-gggg-------tt-gat-gtggaagggaa---tgg
B D                    Gibbon  gccagagg-----a-gggg-------tt-gac-atggaagggaa---tgg
B D                    Rhesus  gccagagg-----a-gggg-------tt-gat-gtagaagggaa---tgg
B D       Crab-eating macaque  gccagagg-----a-gggg-------tt-gat-gtagaagggaa---tgg
B D                    Baboon  gccagagg-----a-gggg-------tt-gat-gtagaagggaa---tgg
B D              Green monkey  gccagagg-----a-gggg-------tt-gat-gtggaagggaa---tgg
B D                  Marmoset  gccagagg-----a-gggg-------tt-gac-gtggaagggaa---tgg
B D           Squirrel monkey  gccagagg-----a-gggg-------tt-gac-gtggaagggaa---tgg
B D                  Bushbaby  gcctgaggcgggcg-gggg-------gt-gacagtggaagggga---caa
           Chinese tree shrew  gccagagg-----a--ggg-------tt-ggc-atggaagggaa---tga
B D                  Squirrel  atcagagg-----a-gggg-------tt-ggc-atggaaggggg---tgg
       Lesser Egyptian jerboa  gccagagg-----a-gggg-------tc-tgc-acagagggaaa---ttg
                 Prairie vole  gcaagaaa-----t-gggg-------tc-tga-gt-gaaggaag---cct
B D           Chinese hamster  actagaaa-----a-gggt-------tc-tga-atggaaggaaa---caa
               Golden hamster  actagaaa-----a-gggg-------tc-tga-atggaaggaaa---cag
B D                     Mouse  gccagaag-----a-tgtg-------tc-tca-attgaagggag---cag
B D                       Rat  gtcagaat-----a-tg---------------------------------
B D            Naked mole-rat  gctggagg-----a-gggg-------tt-ggc-gtggaagggga---tgt
B D                Guinea pig  gcgagagg-----a-gggg-------cg-ggt-agggaagggaa---tgg
                   Chinchilla  gctagagg-----a-gagg-------ct-ggc-agggaagggaa---tca
             Brush-tailed rat  actggagg-----a-gggg-------ct-ggc-atggaagagaa---tgg
B D                    Rabbit  gccaggtg-----a-g-gg-------gt-gac-atggaagggaatggccg
B D                      Pika  gccagagg-----a-gagg-------gt-ggc-atgccaggga----cag
B D                       Pig  gccagagg-----a-aggg-------tt-cac-atggaagagaa---cgg
B D                    Alpaca  gcccgagg-----a-aggg-------tt-cac-atggaagagaa---cgg
               Bactrian camel  gcccgagg-----a-aggg-------tt-cac-atggaagagaa---cgg
B D                   Dolphin  gccagagg-----a-aggg-------tt-cac-atggaagagaa---tgg
                 Killer whale  gccagagg-----a-aggg-------tt-cac-atggaagagaa---tgg
             Tibetan antelope  gccagagg-----a-aggg-------tt-cgc-atggaagagaa---cga
B D                       Cow  gccagagg-----a-aggg-------tt-cgc-atggaagagaa---cgg
B D                     Sheep  gccagagg-----a-aggg-------tt-cgc-atggaagagaa---cgg
                Domestic goat  gccagagg-----a-aggg-------tt-cgc-atggaagagaa---cgg
B D                     Horse  gccagagg-----a-agag-------tt-cac-acggaagggag---cag
B D          White rhinoceros  gccagagg-----a-aggg-------tt-cac-atggaagggag---tat
B D                       Cat  gccagagg-----a-gggg-------tt-cac-acggaagagaa---tgg
B D                       Dog  gccagagg-----aggggg-------tt-cac-atggaagagaa---tgg
B D                   Ferret   gccagagg-----a-gggg-------gt-cac-atggaagagaa---tgg
B D                     Panda  accagagg-----aggggg-------tt-cac-atggaagagaa---tga
               Pacific walrus  gccagagg-----a-gggg-------tt-cac-atgggagagaa---tga
                 Weddell seal  gccagagg-----a-gggg-------tt-cac-atggaagagaa---tga
             Black flying-fox  gccagagg-----a-gggg-------tt-cgc-acagaagggaa---tgg
B D                   Megabat  gccagagg-----a-gggg-------tt-cgc-acagaagggaa---tgg
                Big brown bat  gccagagg-----a-gggg-------tt-cct-atggaagggaa---tgg
         David's myotis (bat)  gccagagg-----a-gggg-------tt-cgt-atggaagggaa---tgg
B D                  Microbat  gccagagg-----a-gggg-------tt-cgt-atggaagggaa---tgg
B D                  Hedgehog  tccagagg-----a-aggg-------gttcac-atggaagagaa---tgg
B D                     Shrew  gccacggg-----a-ggca-------gg--ac-atggaagagaa---tgg
              Star-nosed mole  gccagagg-----a-gggg-------gt-ccc-atggaagagaa---cgg
B D                  Elephant  gccagggg-----a-gggg-------tg-cac-atggaagggaa---tag
          Cape elephant shrew  gcttgggg-----a-ggggtgcaggttg-cac-aagggacggga---tgg
B D                   Manatee  gccagggg-----a-gggg-------tg-cac-atggaagggaa---tag
             Cape golden mole  gccaggga-----a-gggg-------cg-tcc-aaggaa-ggaa---tgg
B D                    Tenrec  gccaggg--------------------------gaggaa-ggaa---tgg
                     Aardvark  gccaggga-----a-gggg-------tg-cac-ctgggaagaac---tgg
B D                 Armadillo  gccagcgg-----a-gggg-------gc-cac-atggatgggaa---cag
B D                   Opossum  attgacat-----a-ggag-------t--gac-atgcaccagaa---ggt
B D           Tasmanian devil  attgacat-----a-ggag-------t--gcc-atcaaccagaa---gac
B D                   Wallaby  attgatgt-----a-ggag-------t--gac-atggaccagaa---ggc
B D                Coelacanth  ==================================================
  D    Spiny softshell turtle  ==================================================
                 Spotted gar  ==================================================
B D                    Turkey  ==================================================
B D                   Chicken  ==================================================
  D              Mallard duck  ==================================================
          Tibetan ground jay  ==================================================
B D               Zebra finch  ==================================================
  D    White-throated sparrow  ==================================================
    Mexican tetra (cavefish)  ==================================================
B D             X. tropicalis  ==================================================
  D            Painted turtle  ==================================================
B D        American alligator  ==================================================
B D                Budgerigar  ==================================================
  D               Rock pigeon  ==================================================
  D       Collared flycatcher  ==================================================
B D       Medium ground finch  ==================================================
B D                    Lizard  ==================================================
  D          Peregrine falcon  ==================================================
  D              Saker falcon  ==================================================
  D                    Parrot  ==================================================
B D                  Platypus  ==================================================
  D           Green seaturtle  ==================================================
  D  Chinese softshell turtle  ==================================================

Inserts between block 19 and 20 in window
B D                    Shrew 50bp

Alignment block 20 of 605 in window, 79586145 - 79586192, 48 bps 
B D                     Human  cctgcg----ttacaag-ttc----actccctctgaactactgtt----tctc-------aa--------
B D                     Chimp  cctgcg----ttacaag-ttc----actccctctgaactactgtt----tctc-------ga--------
B D                   Gorilla  cctgcg----atacaag-ttc----actccctctgaactactgct----tctc-------aa--------
B D                 Orangutan  cctgcg----atacaag-ttc----acttcctctgaactattgct----cctc-------aa--------
B D                    Gibbon  cctggg----atacaag-ttc----attccctctgaactattgct----cctc-------aa--------
B D                    Rhesus  cctgcg----atacaag-ttc----attccctctgaa-tattgct----ccgc-------aa--------
B D       Crab-eating macaque  cctgcg----atacaag-ttc----attccctctgaa-tattgct----ctgc-------aa--------
B D                    Baboon  cctgtg----atacaag-ttc----attccctctgaa-tattgct----ctgc-------aa--------
B D              Green monkey  cctgcg----atacaag-ttc----gttccctctgag-tattgct----cttc-------aa--------
B D                  Marmoset  cctgtg----agacaag-ttc----actccctctgaactattgct----cccc-------ca--------
B D           Squirrel monkey  cctgcg----agataag-ctc----actccctctgaactgttgct----cccc-------ca--------
B D                  Bushbaby  cccgca----atataag-tct----actctctctgaactgtttct----tccc-------ga--------
           Chinese tree shrew  ccatca----gggcaag-agc-----ctcctcctcaaccacggaa----accc-------ca--------
B D                  Squirrel  cctaga----ctgctg--gtg----gctgcctctgaactctggct----cccc-------ca--------
       Lesser Egyptian jerboa  ccggca----gtacaaa-ggt----gctttctcttaactgtgactgaggctg--------aa--------
                 Prairie vole  ccc--------------------------cctcgtggttatggcc----acta------aaa--------
B D           Chinese hamster  tccaca----gtggca--gaa----gcctcctcttagctatggcc----cccc------aaa--------
               Golden hamster  tccaca----gtgatg--g----------tctgttagttgtggtc----ccca------aaa--------
B D                     Mouse  gccaca----gtgcaagagaa----acctcctcttgattatggct----ctc--------aa--------
B D                       Rat  ------------------gaa----acctcctcttgattatgggt----ctg--------aa--------
B D            Naked mole-rat  tctcca----atacaag-gct----gtttacaggtaatgatggct----cacc-------cc--------
B D                Guinea pig  tctaca----gtacaag-gct----gtttccagttaacagtagtt----ctcc-------ca--------
                   Chinchilla  tctaca----gtacaac-gtt----gtttccagataacaatggct----ccac-------ca--------
             Brush-tailed rat  tctgga-----taccag-gtt----gcttccagtaaacaatggct----cccc-------ca--------
B D                    Rabbit  ccggca----acgcaag-cct----gctcccacccatccactgtg----ccccaccgtgcga--------
B D                      Pika  ccagca----gggcaag-gtg----gtccccttctagctgttgtt----cccc-----------------
B D                       Pig  ctgggg----gcaccga-gtca---ccccctctcc-accggagct----ccgg-------cc--------
B D                    Alpaca  catggg----aggctgg-gtc----accttttccc-actattgct----gcag-------cc--------
               Bactrian camel  catggg----aggctgg-gtc----acctttttcc-actattgct----gcag-------cc--------
B D                   Dolphin  cgtggg----atgcttc-ttcaacgacccctctcc-actcttgct----ctgg-------tc--------
                 Killer whale  cgtggg----atgcttc-ttcaacgacccctctcc-actcttgct----ctgg-------tc--------
             Tibetan antelope  tgcggt----gtgctgc-gtcagc-ctccccctcc-accctgcct----ctga-------tc--------
B D                       Cow  cgtggt----gtgctgc-gtcag--cgccccctcc-accctgcct----ctga-------gc--------
B D                     Sheep  cgcggt----gtgctgc-gccagc-ctccccctcc-accctgcct----ctga-------tc--------
                Domestic goat  cgcggt----gtgctgc-gtcagc-ctccccctcc-accctgcct----ctga-------tc--------
B D                     Horse  cgtcaa----aggcaat-ggc----aggccctctg-actatttct----ctga-------cc--------
B D          White rhinoceros  tgtgaa----acgc----gtc----agtcccgctg-actattgct----ctga-------cc--------
B D                       Cat  cacgca----aggcaag-gtc----accccctctg-actacggct----ctga-------cc--------
B D                       Dog  tatgga----gtgtagg-gtc----accccctctg-actatggct----cgca-------cc--------
B D                   Ferret   catggg----acacaag-gtc----accccctctg-acgatcgct----ccca-------cc--------
B D                     Panda  caggga----acgcagg-gtc----accccctctg-acgattgct----cgca-------cc--------
               Pacific walrus  catgga----actcaag-gtc----accccctctg-acgactact----ccca-------cc--------
                 Weddell seal  catgga----acgcaag-gtc----accccctctg-acgactgct----ccca-------cc--------
             Black flying-fox  tgtgaa----atgcaag-gtc----actttctctg-actattgct----tcca-------cc--------
B D                   Megabat  tgtgaa----atgcaag-gtc----actttctctg-actattgct----ccca-------cc--------
                Big brown bat  cgtgct----atgcaag-gtc----acttcctctg-gccatggct----ccca-------cc--------
         David's myotis (bat)  cgtgct----atgcaag-atc----acttcctctg-accagggct----ccca-------cc--------
B D                  Microbat  cgtgct----atgcaag-gtc----acttcctctg-accatggct----ccca-------cc--------
B D                  Hedgehog  catgga----atatagg-gcc---------------actatttct----ctaa-------tc--------
              Star-nosed mole  tgtaga----atacaag-gtc---------------actgttact----ctga-------ct--------
B D                  Elephant  tgtgga----atgcaag-gtt----actccctctcaactcttgct----cctc-------ca--------
          Cape elephant shrew  catgga----attcaag-g-t----gccccctttccactgtggct----tctt-------ca--------
B D                   Manatee  cgtgga----atgcaag-gtt----acttcctctcgactcttgct----actc-------ca--------
             Cape golden mole  catggaatggaaggaag-gtc----actccttctgggctcttgct----cctc-------ca--------
B D                    Tenrec  tgcgga----aggccgg-gct----gcaccttcccatcccttgat----cctc-------ca--------
                     Aardvark  cacaga----atgcagg-gtt----acatc-tctccactcttgct----cctc-------ca--------
B D                 Armadillo  cgcgga----atgcaag-ggt----gcgccccccagagact-gct----cctc-------cc--------
B D                   Opossum  --gatg----agtctaa-gat----tctcttctt---------------cttc-------cc--------
B D           Tasmanian devil  --aatg----agactaa-gag----cttct-------------------cctg-------tcctttacga
B D                   Wallaby  --aaca----agactaa-gag----actttcttgtccttatgaga----ctcg-------gc--tggagg
B D                     Shrew  ======================================================================
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================
B D                  Platypus  ======================================================================
  D           Green seaturtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  --ctga---ga--------------------------
                        Chimp  --ctga---ga--------------------------
                      Gorilla  --ctga---ga--------------------------
                    Orangutan  --atgg---ga--------------------------
                       Gibbon  --ctgg---ga--------------------------
                       Rhesus  --ccag---ga--------------------------
          Crab-eating macaque  --ccag---ga--------------------------
                       Baboon  --ccag---ga--------------------------
                 Green monkey  --ccag---ga--------------------------
                     Marmoset  --ctgg---ga--------------------------
              Squirrel monkey  --ctgg---ga--------------------------
                     Bushbaby  --ctgg---ga--------------------------
           Chinese tree shrew  --ctgg---gg--------------------------
                     Squirrel  --ctgg---ga--------------------------
       Lesser Egyptian jerboa  --gtagccaca--------------------------
                 Prairie vole  --gtag---ga--------------------------
              Chinese hamster  --gtgg---ga--------------------------
               Golden hamster  --gtgg---ga--------------------------
                        Mouse  --gggg---gt--------------------------
                          Rat  --gggg---ga--------------------------
               Naked mole-rat  --ttgg---aa--------------------------
                   Guinea pig  --ttgg---gg--------------------------
                   Chinchilla  --ttgg---ga--------------------------
             Brush-tailed rat  --ctgg---ga--------------------------
                       Rabbit  --ggct---ga--------------------------
                         Pika  ----cg---ga--------------------------
                          Pig  --ctcg---ca--------------------------
                       Alpaca  --ccca---gg--------------------------
               Bactrian camel  --ccca---gg--------------------------
                      Dolphin  --ccg----gg--------------------------
                 Killer whale  --ctg----gg--------------------------
             Tibetan antelope  --ctgc---ga--------------------------
                          Cow  --ctgt---ga--------------------------
                        Sheep  --ctgc---ga--------------------------
                Domestic goat  --ctgc---ga--------------------------
                        Horse  --ccag---ag--------------------------
             White rhinoceros  --ccag---gg--------------------------
                          Cat  --ccaa---gg--------------------------
                          Dog  --cctg---gg--------------------------
                      Ferret   --cctg---gg--------------------------
                        Panda  --cctg---gg--------------------------
               Pacific walrus  --ccgg---gg--------------------------
                 Weddell seal  --ccgg---cg--------------------------
             Black flying-fox  --ccag---gg--------------------------
                      Megabat  --ccag---gg--------------------------
                Big brown bat  --ccag---gg--------------------------
         David's myotis (bat)  --ccag---gg--------------------------
                     Microbat  --ccag---gg--------------------------
                     Hedgehog  --ccag---aa--------------------------
              Star-nosed mole  --ccac---ag--------------------------
                     Elephant  --ccag---gg--------------------------
          Cape elephant shrew  --cctg---ag--------------------------
                      Manatee  --ccag---gg--------------------------
             Cape golden mole  --ctga---gg--------------------------
                       Tenrec  --ctca---ga--------------------------
                     Aardvark  --cctg---ag--------------------------
                    Armadillo  --ctag---gg--------------------------
                      Opossum  --ctcc---tc-----------------ttcttc---
              Tasmanian devil  gactct---gg----actggaggt----atcctagtg
                      Wallaby  taccct---ggtggcattagattttcaggttttagga
                        Shrew  =====================================
                   Coelacanth  =====================================
       Spiny softshell turtle  =====================================
                  Spotted gar  =====================================
                       Turkey  =====================================
                      Chicken  =====================================
                 Mallard duck  =====================================
           Tibetan ground jay  =====================================
                  Zebra finch  =====================================
       White-throated sparrow  =====================================
     Mexican tetra (cavefish)  =====================================
                X. tropicalis  =====================================
               Painted turtle  =====================================
           American alligator  =====================================
                   Budgerigar  =====================================
                  Rock pigeon  =====================================
          Collared flycatcher  =====================================
          Medium ground finch  =====================================
                       Lizard  =====================================
             Peregrine falcon  =====================================
                 Saker falcon  =====================================
                       Parrot  =====================================
                     Platypus  =====================================
              Green seaturtle  =====================================
     Chinese softshell turtle  =====================================

Inserts between block 20 and 21 in window
B D                 Squirrel 5bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
             Star-nosed mole 1bp

Alignment block 21 of 605 in window, 79586193 - 79586293, 101 bps 
B D                     Human  -------------------------------------g-------gctgag-------------------
B D                     Chimp  -------------------------------------g-------gctgag-------------------
B D                   Gorilla  -------------------------------------g-------gctgag-------------------
B D                 Orangutan  -------------------------------------g-------gctgag-------------------
B D                    Gibbon  -------------------------------------g-------gctgac-------------------
B D                    Rhesus  -------------------------------------g-------gctgag-------------------
B D       Crab-eating macaque  -------------------------------------g-------gctgag-------------------
B D                    Baboon  -------------------------------------g-------gctgag-------------------
B D              Green monkey  -------------------------------------g-------gctgag-------------------
B D                  Marmoset  -------------------------------------g-------gctgag-------------------
B D           Squirrel monkey  -------------------------------------g-------gctgag-------------------
B D                  Bushbaby  -------------------------------------g-------gctgag-------------------
           Chinese tree shrew  -------------------------------------g-------gctgag-------------------
B D                  Squirrel  -------------------------------------a-------acc----------------------
       Lesser Egyptian jerboa  -------------------------------------a-------acc----------------------
                 Prairie vole  -------------------------------------c-------ac-----------------------
B D           Chinese hamster  -------------------------------------t-------gct----------------------
               Golden hamster  -------------------------------------t-------gcc----------------------
B D                     Mouse  -------------------------------------t-------gcc----------------------
B D                       Rat  -------------------------------------t-------gcc----------------------
B D            Naked mole-rat  -------------------------------------g-------gctgaa-------------------
B D                Guinea pig  -------------------------------------g-------gctgac-------------------
                   Chinchilla  -------------------------------------g-------accgaa-------------------
             Brush-tailed rat  -------------------------------------g-------gctgaa-------------------
B D                    Rabbit  -------------------------------------g-------ccagcc-------------------
B D                      Pika  -------------------------------------g-------cctgtt-------------------
B D                       Pig  -------------------------------------g-------gctgca-------------------
B D                    Alpaca  -------------------------------------a-------gctgag-------------------
               Bactrian camel  -------------------------------------a-------gctgag-------------------
B D                   Dolphin  -------------------------------------g-------gttgag-------------------
                 Killer whale  -------------------------------------g-------gctgag-------------------
             Tibetan antelope  -------------------------------------g-------gtggag-------------------
B D                       Cow  -------------------------------------g-------gtggag-------------------
B D                     Sheep  -------------------------------------g-------gtggag-------------------
                Domestic goat  -------------------------------------g-------gtggag-------------------
B D                     Horse  -------------------------------------g-------gctgac-------------------
B D          White rhinoceros  -------------------------------------g-------gctgac-------------------
B D                       Cat  -------------------------------------a-------gctgag-----------------at
B D                       Dog  -------------------------------------g-------gctgag-------------------
B D                   Ferret   -------------------------------------g-------gtggag-------------------
B D                     Panda  -------------------------------------g-------gctgag-------------------
               Pacific walrus  -------------------------------------g-------gctgag-------------------
                 Weddell seal  -------------------------------------g-------gctgag-------------------
             Black flying-fox  -------------------------------------g-------gctgag-------------------
B D                   Megabat  -------------------------------------g-------gctgag-------------------
                Big brown bat  -------------------------------------g-------tcggag-------------------
         David's myotis (bat)  -------------------------------------g-------tcggag-------------------
B D                  Microbat  -------------------------------------g-------tcggag-------------------
B D                  Hedgehog  -------------------------------------g-------aatgag-------------------
B D                     Shrew  -------------------------------------g-------ggggag-------------------
              Star-nosed mole  -------------------------------------g-------gatgag-------------------
B D                  Elephant  -------------------------------------a-------gctgag-------------------
          Cape elephant shrew  -------------------------------------g-------gccgag-------------------
B D                   Manatee  -------------------------------------a-------gctgag-------------------
             Cape golden mole  -------------------------------------g-------gctgac-------------------
B D                    Tenrec  -------------------------------------gcagggacgatgcg-------------------
                     Aardvark  -------------------------------------g-------gctgag-------------------
B D                 Armadillo  -------------------------------------a------ggctagc-------------------
B D                   Opossum  ------------------------------tcccga-g-------actctg-------------------
B D           Tasmanian devil  agcattagatctttatcaggttttaggcaatcaagatg-------actatagctcaaagtgagagggagg
B D                   Wallaby  aa----------------------------tcaagatg-------actatagctcgaagtgggagggagg
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================
B D                  Platypus  ======================================================================
  D           Green seaturtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  a-tagccata-accc-act-ggttggcagcctgga-----------------------------------
                        Chimp  a-tagccata-accc-act-ggttggcagcctgga-----------------------------------
                      Gorilla  a-taaccata-accc-act-ggttggcagcctgga-----------------------------------
                    Orangutan  a-tagccata-accc-act-ggctggcaccctgga-----------------------------------
                       Gibbon  a-tagccata-accc-act-ggctggtagcctgga-----------------------------------
                       Rhesus  a-tagccata-accc-act-gtctggcagcctgga-----------------------------------
          Crab-eating macaque  a-tagccata-accc-act-gtctggcagcctgga-----------------------------------
                       Baboon  a-tagccata-accc-act-gtctggcaacctgga-----------------------------------
                 Green monkey  a-tagccata-accc-act-gtctggcagcctgga-----------------------------------
                     Marmoset  a-tagccata-accc-act-ggctggcagcctggt-----------------------------------
              Squirrel monkey  t-tagccata-accc-act-ggctggcagcctgga-----------------------------------
                     Bushbaby  agtaaccgta-actc-act-ggctggcagcttgga-----------------------------------
           Chinese tree shrew  a-tagccataggccc-tctgggttgattgcctgga-----------------------------------
                     Squirrel  ----------------cagggccttgcagtctggg-----------------------------------
       Lesser Egyptian jerboa  ----------------attggcctggctgtccaga-----------------------------------
                 Prairie vole  --------------------------catcctgta-----------------------------------
              Chinese hamster  ----------------actggcttagcatcctgtatcagccattggcctggcatcctgtatcaaccactg
               Golden hamster  ----------------actgccttagcatcttgtatcaggcactggc-----------------------
                        Mouse  ----------------acaagcctggcaccctgta-----------------------------------
                          Rat  ----------------actggcctggcaatctgta-----------------------------------
               Naked mole-rat  a-cagcccgaaacct-actggcctggaagcctgga-----------------------------------
                   Guinea pig  g-tggccctaaactt-agtg-gctggcagcctgga-----------------------------------
                   Chinchilla  a-cagccctaaactt-actgccctggcaggctgca-----------------------------------
             Brush-tailed rat  c-cagctctaaacaa-gctgccctggcagcttgga-----------------------------------
                       Rabbit  a-cagatccccc----cctaagccggcagcctggc-----------------------------------
                         Pika  g-ca--------------------------ctgga-----------------------------------
                          Pig  a-tggtgaca--tcc-actggctgggccgcctggc-----------------------------------
                       Alpaca  a-tagagata--ccc-actggcccagcagcctgga-----------------------------------
               Bactrian camel  a-tagagata--ccc-actggcccagcagcctgga-----------------------------------
                      Dolphin  a-cagtgatg--ccc-actggcctggcagcctgga-----------------------------------
                 Killer whale  c-cagtgatg--ccc-actggcctggcagcctgga-----------------------------------
             Tibetan antelope  a-caatgatg--tcc-actggcctggcagccggca-----------------------------------
                          Cow  a-cagtgatg--tcc-actggcctggcagccagca-----------------------------------
                        Sheep  a-cagtgatg--ccc-actggcctggcagccggca-----------------------------------
                Domestic goat  a-cagtgatg--tcc-actggcctggcagccggca-----------------------------------
                        Horse  a-taaggata--ccc-actggcctggcagcttgga-----------------------------------
             White rhinoceros  a-taatgata--ccc-actggcctggcagcctgga-----------------------------------
                          Cat  a-tagagata--ctt-acgcgcctgacagtctgga-----------------------------------
                          Dog  a-tggagata--ttc-actggcctggcagcctggc-----------------------------------
                      Ferret   a-tagagata--ctg-acgggtctagcagcctgga-----------------------------------
                        Panda  a-tggagata--ctc-acgggcctggcagcctgga-----------------------------------
               Pacific walrus  a-tggagaaa--ctc-acaggcctggcagcctgga-----------------------------------
                 Weddell seal  a-tagagaaa--ctc-atgggcctggcagcctgga-----------------------------------
             Black flying-fox  a-tagtgata--ccc-cttggcctggcagcctgaa-----------------------------------
                      Megabat  a-tagtgata--ccc-cttggcctggcagcctgaa-----------------------------------
                Big brown bat  a-cagtgata--ccc-actggcctggcagcctgga-----------------------------------
         David's myotis (bat)  a-tagtgata--ccc-agtggcctggcagcctgga-----------------------------------
                     Microbat  a-tagtgata--ccc-agtggcctggcagcctgga-----------------------------------
                     Hedgehog  ---aatgata--tcc-actggcctggcaaaccgaa-----------------------------------
                        Shrew  ---ag-ggcc--ccc-accgcccggaa-acccaag-----------------------------------
              Star-nosed mole  ---agtgaca--ccc-gctggtctggc-aacttga-----------------------------------
                     Elephant  a-taggttaa-accc-atgaacctggaagcctgga-----------------------------------
          Cape elephant shrew  g-taggataa-ggcc-accagtgtggcagcctgga-----------------------------------
                      Manatee  a-taggataa-accc-ctgagcctggaagcctgga-----------------------------------
             Cape golden mole  a-taggataa-accc-------------------------------------------------------
                       Tenrec  a-tgggatca-atcc-cgcggtctagcagcctgga-----------------------------------
                     Aardvark  a-taggataa-acccaccgggcctggcaatctgga-----------------------------------
                    Armadillo  g-ggtgacaa-gccc---------------ctgga-----------------------------------
                      Opossum  -----gga---ttac-att----------ctctag-----------------------------------
              Tasmanian devil  a-ga-ggata-tttc-attgacaggg--acaccaa-----------------------------------
                      Wallaby  a-aagggatg-tccc-attgggatgg--gttccaa-----------------------------------
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Parrot  ======================================================================
                     Platypus  ======================================================================
              Green seaturtle  ======================================================================
     Chinese softshell turtle  ======================================================================

                        Human  ----------------------------------------tc-agcttt-----------------gaag
                        Chimp  ----------------------------------------tc-agcttt-----------------gaag
                      Gorilla  ----------------------------------------tc-agcttt-----------------gaag
                    Orangutan  ----------------------------------------tc-agcttt-----------------gaag
                       Gibbon  ----------------------------------------tc-agcttt-----------------gaag
                       Rhesus  ----------------------------------------tc-agcttt-----------------gaag
          Crab-eating macaque  ----------------------------------------tc-agcttt-----------------gaag
                       Baboon  ----------------------------------------tc-agcttt-----------------gaag
                 Green monkey  ----------------------------------------tc-agcttt-----------------gaag
                     Marmoset  ----------------------------------------tc-agcttt-----------------gaag
              Squirrel monkey  ----------------------------------------tc-agcttt-----------------gaag
                     Bushbaby  ----------------------------------------tc-agcttt-----------------gaag
           Chinese tree shrew  ----------------------------------------tc-agcttc-----------------caag
                     Squirrel  ----------------------------------------tc-agtcct-----------------gaag
       Lesser Egyptian jerboa  ----------------------------------------tcaagcatt-----------------gaaa
                 Prairie vole  ----------------------------------------tc-ggcttt-----------------gaaa
              Chinese hamster  gcttagcaccctgtaccagccactggactagcatcctttttc-agcttt-----------------aaaa
               Golden hamster  ---------------------------ctagcatcccttttc-agcttt-----------------gaaa
                        Mouse  ----------------------------------------tc-agcttt-----------------gaaa
                          Rat  ----------------------------------------tc-agcttt-----------------ggaa
               Naked mole-rat  ----------------------------------------tc-agcttt-----------------gaaa
                   Guinea pig  ----------------------------------------tc-agcttt-----------------gaaa
                   Chinchilla  ----------------------------------------tc-agcttt-----------------gaaa
             Brush-tailed rat  ----------------------------------------tc-agcttt-----------------gaaa
                       Rabbit  ----------------------------------------tc-agcttt-----------------gaag
                         Pika  ----------------------------------------tc-agcttt-----------------gaag
                          Pig  ----------------------------------------tc-agctct-----------------gaag
                       Alpaca  ----------------------------------------tc-agcttt-----------------gaag
               Bactrian camel  ----------------------------------------tc-agcttt-----------------gaag
                      Dolphin  ----------------------------------------gc-agcttt-----------------agag
                 Killer whale  ----------------------------------------gc-agcttt-----------------agag
             Tibetan antelope  ----------------------------------------tc-agccct-----------------gaag
                          Cow  ----------------------------------------tc-agccct-----------------gcag
                        Sheep  ----------------------------------------tc-agccct-----------------gaag
                Domestic goat  ----------------------------------------tc-agccct-----------------gaag
                        Horse  ----------------------------------------tc-agctat-----------------gaag
             White rhinoceros  ----------------------------------------tc-agcttt-----------------gaag
                          Cat  ----------------------------------------tc-agcttt-----------------gaag
                          Dog  ----------------------------------------tc-ggcttt-----------------gaag
                      Ferret   ----------------------------------------tc-agcttt-----------------gaag
                        Panda  ----------------------------------------tc-ggcttt-----------------gaag
               Pacific walrus  ----------------------------------------tc-agcttt-----------------gaag
                 Weddell seal  ----------------------------------------tc-agcttt-----------------gaag
             Black flying-fox  ----------------------------------------tc-agcctt-----------------gaag
                      Megabat  ----------------------------------------tc-agcctt-----------------gaag
                Big brown bat  ----------------------------------------tc-agcttg-----------------gaaa
         David's myotis (bat)  ----------------------------------------tc-agcttg-----------------gaag
                     Microbat  ----------------------------------------tc-agcttg-----------------gaag
                     Hedgehog  ----------------------------------------tc-agctta-----------------gaag
                        Shrew  ----------------------------------------cc-cacacc-----------------gaaa
              Star-nosed mole  ----------------------------------------tc-agctgt-----------------gaag
                     Elephant  ----------------------------------------tc-agctct-----------------gaag
          Cape elephant shrew  ----------------------------------------tc-gtctct-----------------gagg
                      Manatee  ----------------------------------------tc-agctct-----------------gaag
             Cape golden mole  ----------------------------------------------------------------------
                       Tenrec  ----------------------------------------tc-ctctag-----------------gaag
                     Aardvark  ----------------------------------------cg-agctct-----------------gaag
                    Armadillo  ----------------------------------------tc-agctct-----------------gaag
                      Opossum  ----------------------------------------tg-accttt-----------------gaac
              Tasmanian devil  ----------------------------------------ag-gtctattgggccagcgtgacctcaaag
                      Wallaby  ----------------------------------------ag-atccat---aacagagggacctgaaag
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Parrot  ======================================================================
                     Platypus  ======================================================================
              Green seaturtle  ======================================================================
     Chinese softshell turtle  ======================================================================

                        Human  ctgtc-----c-tgag-ttcaa--ag---------ggagcca-----a----------------gagatt
                        Chimp  ctgtc-----c-tgag-ttcaa--ag---------ggagcca-----a----------------gagatt
                      Gorilla  ctgtc-----c-tcag-ttcaa--ag---------ggagcca-----a----------------gagatt
                    Orangutan  ctatc-----c-tcag-ttcaa--ag---------ggagcca-----a----------------gagatt
                       Gibbon  ctgtc-----c-tcag-ttcaa--aa---------ggaacca-----a----------------gagatt
                       Rhesus  ctgtc-----c-tcag-ttcaa--ag---------ggagtga-----a----------------gagatt
          Crab-eating macaque  ctgtc-----c-tcag-ttcaa--ag---------ggagtga-----a----------------gagatt
                       Baboon  ctgtc-----c-tcag-ttaaa--ag---------ggagtga-----a----------------gagatt
                 Green monkey  ctgtc-----c-tcag-ttcaa--ag---------ggagtga-----a----------------gagatt
                     Marmoset  ctgtc-----c-tcag-ttcaa--ag---------ggagcca-----a----------------gaaatt
              Squirrel monkey  ctgtc-----c-tcag-ttcaa--ag---------ggagcca-----a----------------gaaatt
                     Bushbaby  ctgtc-----c-tctgtttcaa--ag---------gcagcca-----a----------------gtgatt
           Chinese tree shrew  ctgtc-----c-tcag-ttcaa--ag---------ggaacca-----a----------------gtggtt
                     Squirrel  ctgtt-----t-gcag-ttcaa--ag---------ggaccca-----a----------------gagatt
       Lesser Egyptian jerboa  ctgtc-----c-tcaa-gtcac--ag---------ggaatca-----a----------------gagatt
                 Prairie vole  ctgtt-----c-tcag-ttcac--ag---------gaaacca-----a----------------gcagtt
              Chinese hamster  ttgtc-----c--caa-ttcac--ag---------agaacca-----a----------------gcaatc
               Golden hamster  ctgtc-----c-tcaa-ttcac--ag---------agaacca-----a----------------gcaat-
                        Mouse  ctgtt-----c-ttaa-ctcac--gg---------ggaacca-----a----------------gtgact
                          Rat  ctgtt-----c-ttaa-ttcac--ag---------ggaacca-----a----------------gtggtc
               Naked mole-rat  ctgtc-----c-tttg-ttcaa--ag---------aggtcca-----a----------------ga----
                   Guinea pig  ctgtc-----c-tcca-ttcaa--ag---------ggggcca-----a----------------gacagt
                   Chinchilla  cggtc-----t-tctg-ttcaa--ag---------gggacca-----a----------------gagact
             Brush-tailed rat  ctgtc-----c-accg-tttac--ag---------gtgacga-----a----------------gagatt
                       Rabbit  ctgtc-----c-tcag-atcag--ag---------ggaacca-----a----------------gggatt
                         Pika  ctgcc-----c-tgga-ctc----ag---------gaaaaca-----a----------------gggatt
                          Pig  ctgcc-----c-tcgg-ctcag--ag-----------aacca-----a----------------gcgatt
                       Alpaca  ctgcc-----c-tcag-tttgg--aa-----------gacca-----a----------------gtgatc
               Bactrian camel  ctgcc-----c-tcag-ttcgg--aa-----------gacca-----a----------------gtgatc
                      Dolphin  ctgcc-----c-tcag-ttcag--ag-----------aacca-----a----------------gcgatc
                 Killer whale  ctgcc-----c-tcag-ttcag--ag-----------aacca-----a----------------gcgatc
             Tibetan antelope  ctgcc-----c-tcag-ctcag--ag-----------aacca-----g----------------gtgatc
                          Cow  ctgcc-----c-tcag-ctcag--ag-----------aacca-----g----------------gtgatc
                        Sheep  ctgcc-----c-tcag-ctcag--ag-----------aacca-----g----------------gtgatc
                Domestic goat  ctgcc-----c-tcag-ctcag--ag-----------aacca-----g----------------gtgatc
                        Horse  ctgtc-----t-tcag-ttcag--aa----------tcaccatcctca----------------gtgatt
             White rhinoceros  ctatc-----c-tcag-ttcag--ag-----------aacca-----a----------------gtgatt
                          Cat  tc--------------------------------------------------------------------
                          Dog  ttgcc-----c-tcag-ttcag--ag-----------aactg-----a----------------gttatt
                      Ferret   ttgtc-----c-tcag-ttcag--ac-----------aaccc-----a----------------gttatt
                        Panda  ttgtc-----c-tcag-ttcag--ag-----------aaccg-----a----------------gtcatt
               Pacific walrus  ttgtc-----c-tcag-ttcag--ag-----------aacct-----a----------------gtcatt
                 Weddell seal  ttgtc-----c-tcag-ttcag--ag-----------aaccg-----a----------------gtcatt
             Black flying-fox  ctgtc-----c-tcag-ttcaa--ag-----------aacta-----a----------------gtgatt
                      Megabat  ctgtc-----c-tcag-ttcaa--ag-----------aacta-----a----------------gtaatt
                Big brown bat  ctgtc-----c-tcag-ttcag--ag-----------aactg-----a----------------gcaagt
         David's myotis (bat)  ctgtc-----------------------------------------------------------------
                     Microbat  ctgtc-----c-tcag-ttcag--ag-----------aactg-----a----------------gcaagt
                     Hedgehog  cagtc-----c---------agagag-----------aagca-----a----------------gtgatt
                        Shrew  gtgcc-----catcag-ctccagcag-----------aagca-----g----------------atg---
              Star-nosed mole  ctgtc-----c-tccg-cacagagag-----------aaccc-----a----------------gtg---
                     Elephant  ctgcc-----t-tagg-cttaa--aa---------agaacca-----a----------------gtgatt
          Cape elephant shrew  ctgcc-----c-tggg-ttgaa--ag---------agaaccg-----a----------------gtgacc
                      Manatee  ctgca-----c-tagg-cttta--ag---------agaacca-----a----------------gtgatt
             Cape golden mole  ----------------------------------------------------------------------
                       Tenrec  ccgag-----c-tcac-tttaa--aa---------tgaacca-----g----------------gtgact
                     Aardvark  tcgca-----c-ttgg-ttcaa--ag---------agaaccg-----a----------------gtgatt
                    Armadillo  ctgtc-----c-tcgg-ttcaa--ag---------ggaacac-----a----------------gtgagg
                      Opossum  tctatcaggtt-ttag-gctgt--caggattaatctagccca-----aattgggagggagtgacaggcac
              Tasmanian devil  tctctta---t-ttga-cctat--aa--------ctaaccca-----a----------------gaatat
                      Wallaby  cctccca---t-ttga-cccat--aa--------ctgaccca-----a----------------gagtat
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Parrot  ======================================================================
                     Platypus  ======================================================================
              Green seaturtle  ======================================================================
     Chinese softshell turtle  ======================================================================

                        Human  ctgggtt-c--atagaag----g--------gaag
                        Chimp  ctgggtt-c--atagaag----g--------gaag
                      Gorilla  ctgggtt-c--atagaag----g--------gaag
                    Orangutan  ctgggtt-c--atagaag----g--------gaag
                       Gibbon  cggggtt-c--atagaag----g--------gaag
                       Rhesus  ctgggtt-c--agagcag----g--------gaag
          Crab-eating macaque  ctgggtt-c--agagcag----g--------gaag
                       Baboon  ctgggtt-c--agagcag----g--------gaag
                 Green monkey  ctgggtt-c--agagcag----g--------gaag
                     Marmoset  ctgggtt-c--acggcag----g--------ggag
              Squirrel monkey  ctgggtt-c--atagcaa----g--------ggag
                     Bushbaby  ctgggtt-c--atagcaggggcg--------gggg
           Chinese tree shrew  ccaggtt-c--aatctag----a--------ggag
                     Squirrel  ctgggtt-c--catgtgg----g--------aagg
       Lesser Egyptian jerboa  tggggtt-a--atacggg----g--------agaa
                 Prairie vole  ctgggtt-c--ctagaag----g--------ggaa
              Chinese hamster  ctgggtt-c--acagaag----g--------ggga
               Golden hamster  atgggtt-c--acagaag----g--------ggga
                        Mouse  ctgggtt-c--atacaag----g--------ggaa
                          Rat  ctgggtt-c--atagaaa----g--------ggga
               Naked mole-rat  -----------------------------------
                   Guinea pig  ccagatt-c--atagcgg----c--------gaga
                   Chinchilla  ccagatt-c--atagtag----a--------gagg
             Brush-tailed rat  ccagatt-g--atagtga----a--------gaga
                       Rabbit  cccggtt-a--agatcgg----g--------gagg
                         Pika  tctggta-a--atatcgg----g--------gcag
                          Pig  ctgggct-c--acagtgg----a--------ggcc
                       Alpaca  ccggggt-c--acgg-gc----a--------ggag
               Bactrian camel  ccggggt-c--acgg-gc----a--------ggag
                      Dolphin  ctgggtt-c--acagtgg----a--------ggag
                 Killer whale  ctgggtt-c--acagtgg----a--------ggag
             Tibetan antelope  ctgggtt-c--acaatgg----a--------tgag
                          Cow  ccgggtt-c--acaatgg----a--------tgag
                        Sheep  ctgggtt-c--acaatgg----a--------tgag
                Domestic goat  ctgggtt-c--acaatgg----a--------tgag
                        Horse  ctgagtt-c--acagtgg----g--------agag
             White rhinoceros  ccgagtt-c--acagaga----g--------agag
                          Cat  -----------------------------------
                          Dog  ccggggt-c--acagcgg----g---------gag
                      Ferret   ccggggt-c--acagtgg----g---------gag
                        Panda  ccggggt-c--acggtgg----g---------gag
               Pacific walrus  ccagggt-c--ccagtgg----g---------gag
                 Weddell seal  ccggggt-c--acagtag----g---------gag
             Black flying-fox  ccgggtt-c--acagtgg----g--------gaaa
                      Megabat  ccgggtt-c--acagtgg----g--------gaaa
                Big brown bat  ctgggtt-c--acagtgg----gggtgggggaggg
         David's myotis (bat)  -----------------------------------
                     Microbat  ctggctt-c--acagcgg----g------------
                     Hedgehog  cc-agtt-c--acagcag----a--------gaaa
                        Shrew  -----------------------------------
              Star-nosed mole  -----------------------------------
                     Elephant  ccaggtt-c--at--------------------ag
          Cape elephant shrew  ctcggtt-c--attatgg----g--------ggag
                      Manatee  ccgggtt-c--ac--------------------ag
             Cape golden mole  ctgggtt-ccaat----g----g--------ggag
                       Tenrec  ctggatt-ccaat----t----g--------gggg
                     Aardvark  cagggtt-c--acagtgg----g--------gaaa
                    Armadillo  tt-ggtt-c--ttggtgg----g--------ggag
                      Opossum  ctaaggtcc--atactag----a--------gtga
              Tasmanian devil  ccagagg-c--atagtac----t--------gtag
                      Wallaby  ctggagt-c--atagtac----a--------gtag
                   Coelacanth  ===================================
       Spiny softshell turtle  ===================================
                  Spotted gar  ===================================
                       Turkey  ===================================
                      Chicken  ===================================
                 Mallard duck  ===================================
           Tibetan ground jay  ===================================
                  Zebra finch  ===================================
       White-throated sparrow  ===================================
     Mexican tetra (cavefish)  ===================================
                X. tropicalis  ===================================
               Painted turtle  ===================================
           American alligator  ===================================
                   Budgerigar  ===================================
                  Rock pigeon  ===================================
          Collared flycatcher  ===================================
          Medium ground finch  ===================================
                       Lizard  ===================================
             Peregrine falcon  ===================================
                 Saker falcon  ===================================
                       Parrot  ===================================
                     Platypus  ===================================
              Green seaturtle  ===================================
     Chinese softshell turtle  ===================================

Inserts between block 21 and 22 in window
B D                   Tenrec 3bp
B D                  Wallaby 210bp

Alignment block 22 of 605 in window, 79586294 - 79586419, 126 bps 
B D                     Human  gatttgaa-tcatttctgtt-ggg-ctt-ctctca-----------------------------------
B D                     Chimp  gatttgaa-tcatttctgtt-ggg-ctt-ctctca-----------------------------------
B D                   Gorilla  gatttgaa-tcatttctgtt-ggg-ctt-ctctca-----------------------------------
B D                 Orangutan  gattcgaa-tcatttctgat-ggg-ctt-ctctca-----------------------------------
B D                    Gibbon  gattcgaa-tcatttctgat-ggg-ctt-ctctca-----------------------------------
B D                    Rhesus  gattagaa-tcatttctgat--ag-ctt-ctctca-----------------------------------
B D       Crab-eating macaque  gattagaa-tcatttctgat--ag-ctt-ctctca-----------------------------------
B D                    Baboon  gattagaa-tcatttctgat--ag-ctt-ctctca-----------------------------------
B D              Green monkey  gattagaa-acatttctgat--ag-c--------------------------------------------
B D                  Marmoset  gatttgaa-tcatttctgat-ggg-ctt-ctctca-----------------------------------
B D           Squirrel monkey  gattcgaa-tcatttctgat-ggg-ctt-ctctca-----------------------------------
B D                  Bushbaby  gattcaaa-tcatttctgag-ggg-cttcccctcc-----------------------------------
           Chinese tree shrew  gatttgca-tcatttctggt-ggg-ctt-ctctct-----------------------------------
B D                  Squirrel  --attcaa-tcatgtctgat-ggg-ctt-ctcattcacaagcg---------------------------
       Lesser Egyptian jerboa  --tcttaa-acatttctgat-gggtatc-tttagt-----------------------------------
                 Prairie vole  --tatgaa-tgatttctggt-ggg-ctt-ttcttt-----------------------------------
B D           Chinese hamster  -tttttaa-caatttctgg--ggg-ctc-ctctgt-----------------------------------
               Golden hamster  --tctgat-caatttctgg--ggg-atc-ctctgt-----------------------------------
B D                     Mouse  --tatgaa-caatttctgac-gga-----ctttgt-----------------------------------
B D                       Rat  --tatgaa-caatttctgac-ggg-----ctctgt-----------------------------------
B D            Naked mole-rat  --gttgaa-cccattctgat-ggg-ttc-ccctca-----------------------------------
B D                Guinea pig  -ggctgaa-ttacttatgat-gga-ctc-ctctca-----------------------------------
                   Chinchilla  -agtggaa-tcatttccgac-ggg-ctc-atccca-----------------------------------
             Brush-tailed rat  -agttgaa-tcattcctgat-ggg-ctc-ctctca-----------------------------------
B D                    Rabbit  -atccgaa-tcacttctaac-ggg-cct-ctcatg-----------------------------------
B D                      Pika  -acccaaa-tcatttctga---ga-ctt-ctcatg-----------------------------------
B D                       Pig  gctatgaa-ggggctctgat-ga------cgctca-----------------------------------
B D                    Alpaca  aacatgga-tagtctctgat-gcg-tg---actca-----------------------------------
               Bactrian camel  aacatgaa-tggcctctgat-ggg-tg---actca-----------------------------------
B D                   Dolphin  gatatgaa-tggtctctgat-ggg-tgt-ctctca-----------------------------------
                 Killer whale  gatgtgaa-tggtctctgat-ggg-tgt-ctctca-----------------------------------
             Tibetan antelope  gac-tgaa-aggtctctgtt-ggg-tgt-acccca-----------------------------------
B D                       Cow  gac-tgaa-aggtctctgat-ggg-tgt-ccccca-----------------------------------
B D                     Sheep  gac-tgaa-aggtctctgta-ggg-tgt-acccca-----------------------------------
                Domestic goat  gac-tgaa-aggtctctgtt-ggg-tgt-acccca-----------------------------------
B D                     Horse  gctttgaa-tggtctctgat-ggc-tgc-ctctca-----------------------------------
B D          White rhinoceros  gctttgaa-tggcctctgat-ggg-tgt-ctctca-----------------------------------
B D                       Cat  -------------------------cag-ctttga-----------------------------------
B D                       Dog  gatctgaa-tggtctctgat-ggg-cat-ctctca-----------------------------------
B D                   Ferret   ggtctgaa-tggtctcggat-ggg-cat-ctcccg-----------------------------------
B D                     Panda  gatctgaa-tggtctctgat-ggg-cat-ctctca-----------------------------------
               Pacific walrus  gatctgaa-gggtctctgat-ggg-cat-ctctca-----------------------------------
                 Weddell seal  gatctaaa-gggtctctgat-ggg-cat-ctctca-----------------------------------
             Black flying-fox  gatttgca-tggtctctgat-ggg-tgg-ctctca-----------------------------------
B D                   Megabat  gatttgca-tggtctctgat-ggg-tgg-ctctca-----------------------------------
                Big brown bat  ggcaggaa-tggtctctga---------------g-----------------------------------
         David's myotis (bat)  ----------------------------------g-----------------------------------
B D                  Microbat  ----ggaa-tggtctctga---------------g-----------------------------------
B D                  Hedgehog  gatgtgatagaagctctgac-aca-agt-ttcttt-----------------------------------
B D                     Shrew  gatt-----ggggc----ga-ggg-cgt-ttctg------------------------------------
              Star-nosed mole  gacttgtggggggccttgga-ggg-tga-ttctgc-----------------------------------
B D                  Elephant  aacctgag-tcatctctgct-tgg-tgt-ctccca-----------------------------------
          Cape elephant shrew  aatttgaa-tcatctctgac-tgg-tgt-ctcctg-----------------------------------
B D                   Manatee  aatttgaa-tcatctctgct-tgg-tgt-ctccca-----------------------------------
             Cape golden mole  aatttgaa-ttttctgtaac-aga-agg-ctccaa-----------------------------------
B D                    Tenrec  aattcgaa-tcctctctgactggc-atc-ctgcaa-----------------------------------
                     Aardvark  aatttgaa-tcatctttgat-agg-tgt-ctctca-----------------------------------
B D                 Armadillo  gattggaa-tcatcaccgac-tgg-cg--ctccca-----------------------------------
B D                   Opossum  -----------------------------------aatcaatgtctcctatgcctcataactaacccaag
B D           Tasmanian devil  ----------------------------------------------------------------------
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================
B D                   Wallaby  ======================================================================
B D                  Platypus  ======================================================================
  D           Green seaturtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  -------------------aggac----------tctcaggct----gtccgcccct---gggaga--ac
                        Chimp  -------------------aggac----------tctcaggct----gtccgcccct---gggaga--ac
                      Gorilla  -------------------aggac----------tctcaggct----gtccacccct---gggaga--ac
                    Orangutan  -------------------agtgc----------tctcaggct----gtccacccct---gggaga--ac
                       Gibbon  -------------------agctc----------tctcaggct----gtccacccct---gggaga--ac
                       Rhesus  -------------------agtgc----------tttcaggct----gctcaaccct---cgaaga--ac
          Crab-eating macaque  -------------------agtac----------tttcaggct----gctcaaccct---cgaaga--ac
                       Baboon  -------------------agtgc----------tttcaggct----gctcaaccct---cgaaga--ac
                 Green monkey  ---------------------tgc----------tctcaggct----gctcaaccct---cgaaga--ac
                     Marmoset  -------------------agtgt----------tc-caggtt----gcctgcctct---cggaga--ac
              Squirrel monkey  -------------------agtgt----------tc-caggct----gcctgcctct---cggaga--ac
                     Bushbaby  -------------------agtct----------tcccagact----tcccatccct---cagaga--ac
           Chinese tree shrew  -------------------gcctt----------ttgcagccc----gccggtgctc------aga--ac
                     Squirrel  -------------------at--------------tgctgatg----gcccatcctt---tagagg--ac
       Lesser Egyptian jerboa  -------------------gtt-------------cccccaat----gcctatccct---tggagg--aa
                 Prairie vole  -------------------gcctt-----------cttccatt----gccaacgcct---cggagg--aa
              Chinese hamster  -------------------gtctt----------ccttccatt----gcaaggtcct---cagagg--aa
               Golden hamster  -------------------gt--------------tttctatt----gcaaggtcct---gagagg--ag
                        Mouse  -------------------gt--------------ctgcctct----gctagctctt---cagagg--ac
                          Rat  -------------------gt--------------ctgccatt----gctaattcct---ccgagg--ac
               Naked mole-rat  -------------------gggat----------tcatccact----gcacatcctc---ccaaag----
                   Guinea pig  -------------------aggat----------tc-tccact----gcaagtcttt---ccaaag--cc
                   Chinchilla  -------------------aggat----------ttacctgct----gagcatcttt---ccaaaa--ac
             Brush-tailed rat  -------------------gggac----------tcacccagt----acacatgctt---ccagag--ag
                       Rabbit  -------------------g--------------------------------------------------
                         Pika  -------------------a---------------catc-------------ttgct---cagagc--ag
                          Pig  -------------------agtgt----------ttacaggctgcccgcccatccct---cagaga--ac
                       Alpaca  -------------------agggt----------tcacaaact----gcgcatccct---cagaga--ac
               Bactrian camel  -------------------agggt----------tcacaaact----gcgcatccct---cagaga--ac
                      Dolphin  -------------------agtgt----------tcaaagact----gcccatcccc---agggaa--cc
                 Killer whale  -------------------agtgt----------tcaaagact----gcccatcccc---agggaa--cc
             Tibetan antelope  -------------------ggtgt----------tc--agact----gagcatctct---tgggga--at
                          Cow  -------------------agtgt----------tc--agacc----gagcatccct---tgggga--ac
                        Sheep  -------------------ggtgt----------tc--agact----gagcatctct---tgggga--ac
                Domestic goat  -------------------ggtgt----------tc--agaca----gagcatctct---tgggga--ac
                        Horse  -------------------ggtgt----------tcacagatt----acccatcctt---cagaga--aa
             White rhinoceros  -------------------agtgt----------tcacagact----gcccatccct---cagaga--ag
                          Cat  -------------------ag---------------------------cccatccct---ctggga--gc
                          Dog  -------------------aatgc----------tcagagact----gcccatccct---ca--ga--ac
                      Ferret   -------------------agtgg----------tcacaga-----------------------ga--ac
                        Panda  -------------------agcgt----------tcacagagg----gcctatccct---cagaga--ac
               Pacific walrus  -------------------agtgg----------tcacagact----gcccatccct---cagaga--ac
                 Weddell seal  -------------------agtgg----------tcacagact----gcccatccct---caggga--ac
             Black flying-fox  -------------------agtgc----------tcacagact----atccatccct---ccggga--ac
                      Megabat  -------------------agtgc----------tcacagact----atccatccct---ccggga--ac
                Big brown bat  -------------------gatgc----------tcataggtc----acccgccccg---cagaga--ac
         David's myotis (bat)  -------------------gatgc----------tcagagacc----gcccatccct---cagaga--ac
                     Microbat  -------------------gatgc----------tcagagacc----gcccatccct---cagaga--ac
                     Hedgehog  -------------------agcac----------gtacagact----gatcatccctcaacggaaa----
                        Shrew  --------------------------------------atgc-----gggcgcccagggctgcgga----
              Star-nosed mole  -------------------agccc----------acacacgc-----ggtccatcctggccagagagagt
                     Elephant  -------------------agtgt----------ttgcagagt----ccccatccct---tagagc--ag
          Cape elephant shrew  -------------------agtgt----------ccacagaca----cttcatttct---cagaga--cc
                      Manatee  -------------------agtgt----------ttgcagact----ccccatccct---cagaga--at
             Cape golden mole  -------------------agcgt----------tctcagact----ccccatcctt---cagaga--tg
                       Tenrec  -------------------aac-t----------tgtcagactc---ccccatccct---ccgaga--tc
                     Aardvark  -------------------agtgt----------ccacagact-----cccggccct---cagaga--ac
                    Armadillo  -------------------agtgt----------tggcagagc------------ct---cggaga--ac
                      Opossum  tatatctaggggtcataaaactgtaggtgataggacctggtct----tctaaacccc---agaata--ta
              Tasmanian devil  -------------------aatatagg-------acctgctct----ttaaaacccc---agagta--tc
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Parrot  ======================================================================
                      Wallaby  ======================================================================
                     Platypus  ======================================================================
              Green seaturtle  ======================================================================
     Chinese softshell turtle  ======================================================================

                        Human  caca-----ctggccca-------gcttctgccggt--gt-gt-gctagg-----gttcc----------
                        Chimp  caca-----ctggccca-------gcttctgccggt--gt-gt-gctagg-----gttcc----------
                      Gorilla  caca-----ctggccca-------gcttctgccggc--gt-gt-gctagg-----gttcc----------
                    Orangutan  caca-----ctggccca-------gcttctgccggc--gt-gt-gctagg-----gttcc----------
                       Gibbon  caca-----ctggccca-------gcttctgccggc--gt-gt-gctagg-----gttcc----------
                       Rhesus  caca-----ctggccca-------gcttccactggt--gt-gt-gctagg-----gttcc----------
          Crab-eating macaque  caca-----ctggccca-------gcttccactggt--gt-gt-gctagg-----gttcc----------
                       Baboon  caca-----ctggccca-------gcttccactggt--gt-gt-gctagg-----gttcc----------
                 Green monkey  caca-----ctggtcca-------gcttccactggt--gt-gt-gctagg-----gttcc----------
                     Marmoset  cacc-----ctggccca-------ggttccgtgggc--gt-gt-actagg-----gttcc----------
              Squirrel monkey  cacc-----ctggcaca-------ggttccgtgggc--gt-gg-gctagg-----gttcc----------
                     Bushbaby  caca-----ccggctca-------gcttctgtggac-aat-tt-gccaggagaatgtttt----------
           Chinese tree shrew  tgca-----ctggcctc-------acttggcaagct--gt-tc-aggggg-----cctca----------
                     Squirrel  c-cc-----ccggtcca-------gctttggcaggc--ag-tgaactagg-----ccaca----------
       Lesser Egyptian jerboa  c-tg-----ctg-ccca-------gcttt-gcagcc--at-tt-gccata-----acaaa----------
                 Prairie vole  c-cc-----caggtcca-------gttct-tccggc--ac-ct-act--------gtgcc----------
              Chinese hamster  c-ca-----ttggtcca-------gttct-ttaggc--ac-ct-acca-g-----gtacc----------
               Golden hamster  c-ca-----ttggtcca-------gttct-ttaggc--ac-ct-gcta-g-----gtacc----------
                        Mouse  c-ca-----ttgaccta-------gctct-gtgggc--ac-tt-actg-g-----gcatc----------
                          Rat  c-cg-----ttggtcca-------gatct-gcaggc--ac-tt-actg-g-----gcgtc----------
               Naked mole-rat  -------------------------ctctgacaggc--agatt-gtcaga-----ggaca----------
                   Guinea pig  t-ca-----ccggtgca-------gctgtgacggg---aggtt-attaga-----gaatg----------
                   Chinchilla  t-ca-----ccggtcca-------cctctgaggggt--agatt-attaga-----ggaca----------
             Brush-tailed rat  c-ct-----ctggtcca-------gctctgaccaga--agatt-attaga-----ggaca----------
                       Rabbit  ---------tcggc-----------tttc-acaggc--gg-tt-a--agg-----acaca----------
                         Pika  c-cagcagctcggcctg-------gcttc-gcaggc--ag-tt-c----------tctca----------
                          Pig  ctaa-----gtggtcca-------gcctcccctggc-tct-tt-gcgagg-----gcccg---------t
                       Alpaca  caaa-----ctggtcca-------gatttccccggc-tct-tt-cctagg-----gcaca---------t
               Bactrian camel  caaa-----ctggtcca-------gatttccccagc-tct-tt-cctagg-----gcaca---------t
                      Dolphin  caaa-----ccaaa---------------ccctggc-tct-tt-actagg-----gcctg---------t
                 Killer whale  caaa-----ccaaa---------------ccctggc-tct-tt-actagg-----gcctg---------t
             Tibetan antelope  caaa-----ctggccca-------cttctccctggcttcg-tt-acctag-----accgg---------a
                          Cow  caaa-----ctggccca-------cttctccctggcttca-tt-acctag-----acc-g---------a
                        Sheep  caaa-----ctggccca-------cttctccctggcttcg-tt-gcctag-----accgg---------a
                Domestic goat  caaa-----ctggccca-------cttctccctggcttcg-tt-gcctag-----accgg---------a
                        Horse  caaa-----ctggtcca-------gctttccctggc-act-tt-actagg-----tctca----------
             White rhinoceros  caaa-----ctggtcca-------gctttccctggc-act-tg-actagg-----gctca----------
                          Cat  ccaa-----ccggtccc-------ccttcccctgga-tct-tt-gctagg-----gcaca----------
                          Dog  ccaa-----ctggtcca-------gctgcccctgga-tct-tt-act-gg-----gcaca----------
                      Ferret   ccaa-----ctggtcca-------gccgcccttggg-tct-tt-actggg-----gccca----------
                        Panda  ccaa-----ctggtcca-------gctgcccatggg-tct-ct-actggg-----gccca----------
               Pacific walrus  ccaa-----ctggtcca-------gctgcccctggg-tct-tt-actggg-----gccca----------
                 Weddell seal  acaa-----ctggtcca-------gctgcccctggg-tct-tt-actggg-----gccca----------
             Black flying-fox  caaa-----gtggtccc-------gctttacctggc-acc-tc-actagg-----gtacg----------
                      Megabat  caaa-----gtggtccc-------gctttacctggc-acc-tc-actagg-----gtacg----------
                Big brown bat  caaa-----ctggtcct-------gctttcgctggc-acg-tc-gctagg-----gcata----------
         David's myotis (bat)  caaa-----ctgctcct-------gcttcccctggc-act-tt-gcgggg-----gcata----------
                     Microbat  caaa-----ctgctcct-------gctttccctggc-act-tt-gcgggg-----gcata----------
                     Hedgehog  caaa-----ctggccca-------gccctcactgta--ct-tc-ccaaga-----gcaca----------
                        Shrew  ------------gccca-------gccctcccctgc--cc-tc-tcgggg-----gtcca----------
              Star-nosed mole  caaa-----ctggtcct-------gccttccctgaa--tc-tg-cctgca-----gcata----------
                     Elephant  gaaa-----ctggccta-------gct-tcccaagc-cat-tt-actagt-----acaca----------
          Cape elephant shrew  caca-----ctggcccc-------actctcactggc-aat-ct-gctgcg-----acacc----------
                      Manatee  gaaa-----ctggccca-------gctttccctggc-gat-tt-actagg-----acact----------
             Cape golden mole  gcga-----cagactca-------actttctctggc-cct-gt-actaaa-----gcaca----------
                       Tenrec  aaag-----cagaccca-------gccttcctgggc-cat-tt-actaag-----aaaca----------
                     Aardvark  agca-----ctggccca-------gct-tccccaac-gat-tt-actggg-----acaca----------
                    Armadillo  gagg-----tgggtgca-------gctctccttagc-ggc-tt-ac-aga-----gcacc----------
                      Opossum  ttcc-----ctgtctcaccatgaaacttctggaagg--tt-aa-actagt-----ttgca------aaaa
              Tasmanian devil  ttcc-----ctaccccactatttttcttctggaagg--at-ga-gctagt-----atgcatgtgtgaaaa
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
           American alligator  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Parrot  ======================================================================
                      Wallaby  ======================================================================
                     Platypus  ======================================================================
              Green seaturtle  ======================================================================
     Chinese softshell turtle  ======================================================================

                        Human  ttctcttccat------ctg-ccc-----ccac----------ctc
                        Chimp  ttctcttccat------ctg-ccc-----ccac----------ctc
                      Gorilla  ttctcttccat------ctg-ccc-----ccac----------ctc
                    Orangutan  ttctcttccat------ctg-ccc-----ccac----------ctc
                       Gibbon  ttgtcttccat------ctg-ccc-----ccac----------ctc
                       Rhesus  ttctcttccat------ctc-ccc-----cagc----------ctc
          Crab-eating macaque  ttctcttccat------ctc-ccc-----cagc----------ctc
                       Baboon  ttctcttccat------ctc-ccc-----cagc----------ctc
                 Green monkey  ttctcttccat------ctc-ccc-----caaa----------ctc
                     Marmoset  ttctctttcat------c-t-ccc-----ccat----------ctc
              Squirrel monkey  ttctcttccat------ctt-cct-----ccac----------ctt
                     Bushbaby  ttttctcccat------ctt-ccc-----cctc----------ctc
           Chinese tree shrew  ttctcttccct------ct--cct-----gatc----------ctc
                     Squirrel  ttctcttccat------ttt-cta-----ccca----------ctc
       Lesser Egyptian jerboa  ttttcttccat------att-tac-----cccc------------t
                 Prairie vole  tgcttgtccag------act-ctg-----ccct----------ctc
              Chinese hamster  tgcttctccag------att-cct-----ccct----------ctc
               Golden hamster  tgctcctccag------atg-gtg-----ccct----------ctc
                        Mouse  tgcgagtccag------act-ctg-----ccctccccaccctgcac
                          Rat  tgctagtccag------act-ctg-----ccct----------cac
               Naked mole-rat  ttccccccca---------c-cac-----cact---------a--c
                   Guinea pig  tgccctttcat------atc-cct-----cccc---------gggc
                   Chinchilla  ttctcttcagt------acc-cct-----ccct---------ggtc
             Brush-tailed rat  ctctcttccat------aac-cct-----ccct---------gatc
                       Rabbit  ttctctgccat------ctt-ccc-----cacc----------tgg
                         Pika  gcctctgcc----------t-cct-----cccc----------tgg
                          Pig  ttctcttccat------cttccccctcctcctc----------ctc
                       Alpaca  ttctcttccat------cttcccc-----cctc----------ctc
               Bactrian camel  ttctcttccat------cttcccc-----cctc----------ctc
                      Dolphin  ttctcttccat------cttcccc-----cctc----------ctc
                 Killer whale  ttctcttccat------cttcccc-----cctc----------ctc
             Tibetan antelope  ttctcttccat------cttcccc-----cctc----------ctc
                          Cow  ttctcttccat------cttcccc-----cctc----------ctc
                        Sheep  ttctcttccat------cttcccc-----cctc----------ctc
                Domestic goat  ttctcttccat------cttcccc-----cctc----------ctc
                        Horse  -tctctgccat------cttcccc-----cctc----------ctc
             White rhinoceros  -tctcttccat------ctccccc-----cctc----------ctc
                          Cat  ttctcttccat------ttt-ccc-----cctc----------ctc
                          Dog  ttctcttccatcgtctccct-cct-----cctc----------ctc
                      Ferret   ttctcttccat------ctg-ccc-----cctc----------ctg
                        Panda  ttctcttccat------ctt-ccc-----cctc----------ctc
               Pacific walrus  ttctcttccat------ctt-ccc-----cctc----------ctc
                 Weddell seal  ttctcttccat------ctt-ccc-----cctc----------ctc
             Black flying-fox  tcctcttccat-----cttc-ccc-----cctc----------ctc
                      Megabat  tcctcttccat-----cttc-ccc-----cctc----------ctc
                Big brown bat  tcctcttccat------gtc-ccc-----cctc----------ctc
         David's myotis (bat)  tcctcttccat------gtc-ccc-----cgtc----------ctc
                     Microbat  tcctcttccat------gtg-ccc-----cctc----------ctc
                     Hedgehog  ttctcttccat------cttcctc-----cctc----------ctc
                        Shrew  ttctcttccat------cttcctc-----ctcc----------ctc
              Star-nosed mole  ttctcttccat------tggtctc-----cctc----------ctc
                     Elephant  ttctcttccat----------ctt-----cccc----------ctc
          Cape elephant shrew  tactcttccat----------cct-----ctcc----------ctc
                      Manatee  ttctcttccat----------ctt-----cccc----------ctc
             Cape golden mole  gactcctctac----------cca-----ctcc----------cta
                       Tenrec  g--tcttccgt----------ctc-----cccc----------ttg
                     Aardvark  ttctcttccat----------ctt-----cccc----------cct
                    Armadillo  ttctcttccat----------cgt-----cccc----------ctc
                      Opossum  tattctccaat------tct--------------------------
              Tasmanian devil  tactccctgat------t----------------------------
                   Coelacanth  ==============================================
       Spiny softshell turtle  ==============================================
                  Spotted gar  ==============================================
                       Turkey  ==============================================
                      Chicken  ==============================================
                 Mallard duck  ==============================================
           Tibetan ground jay  ==============================================
                  Zebra finch  ==============================================
       White-throated sparrow  ==============================================
     Mexican tetra (cavefish)  ==============================================
                X. tropicalis  ==============================================
               Painted turtle  ==============================================
           American alligator  ==============================================
                   Budgerigar  ==============================================
                  Rock pigeon  ==============================================
          Collared flycatcher  ==============================================
          Medium ground finch  ==============================================
                       Lizard  ==============================================
             Peregrine falcon  ==============================================
                 Saker falcon  ==============================================
                       Parrot  ==============================================
                      Wallaby  ==============================================
                     Platypus  ==============================================
              Green seaturtle  ==============================================
     Chinese softshell turtle  ==============================================

Inserts between block 22 and 23 in window
B D                  Opossum 4bp
B D          Tasmanian devil 6bp

Alignment block 23 of 605 in window, 79586420 - 79586420, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  t
B D           Squirrel monkey  g
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  c
       Lesser Egyptian jerboa  c
                 Prairie vole  c
B D           Chinese hamster  c
               Golden hamster  c
B D                     Mouse  c
B D                       Rat  c
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  c
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                  Hedgehog  t
B D                     Shrew  t
              Star-nosed mole  t
B D                  Elephant  c
          Cape elephant shrew  t
B D                   Manatee  c
             Cape golden mole  c
B D                    Tenrec  c
                     Aardvark  c
B D                 Armadillo  c
B D                      Pika  -
B D                Coelacanth  =
  D    Spiny softshell turtle  =
                 Spotted gar  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  =
    Mexican tetra (cavefish)  =
B D             X. tropicalis  =
  D            Painted turtle  =
B D        American alligator  =
B D                Budgerigar  =
B D                   Opossum  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D                    Parrot  =
B D                   Wallaby  =
B D                  Platypus  =
  D           Green seaturtle  =
  D  Chinese softshell turtle  =

Alignment block 24 of 605 in window, 79586421 - 79586438, 18 bps 
B D                     Human  tctgt-----t-gcttt--gtctatc
B D                     Chimp  tctgt-----t-gcttt--gtctatc
B D                   Gorilla  tctgt-----t-gctct--gtctatc
B D                 Orangutan  tctgt-----t-gctct--gtctatt
B D                    Gibbon  tctgt-----t-gctct--gtctatt
B D                    Rhesus  tctgt-----t-gctct--gtctatt
B D       Crab-eating macaque  tctgt-----t-gctct--gtctatt
B D                    Baboon  tctgt-----t-gctct--gtctatt
B D              Green monkey  tctgt-----t-gctct--gtctatt
B D                  Marmoset  tctgt-----t-gctct--gtctatt
B D           Squirrel monkey  tctgt-----t-g--ct--gtctatt
B D                  Bushbaby  tctgt-----t-gccct-ggtctgtt
           Chinese tree shrew  tccct-----c-gccct-ggtccatt
B D                  Squirrel  tctgt-----t-gctct-gatctgtc
       Lesser Egyptian jerboa  tccat-----t-gctgt-gatctatt
                 Prairie vole  cccat-----c-tccgt-ggtctgtt
B D           Chinese hamster  tccat-----c-tctgt-gatctgtt
               Golden hamster  tccat-----c-tctgt-ggtctgtt
B D                     Mouse  cccat-----c-tctgt-ggtt--tt
B D                       Rat  cccat-----c-tctgt-ggtttgtt
B D            Naked mole-rat  acctt-----t-gctct-gctgggtt
B D                Guinea pig  tcctt-----t-gctct-ggtctgct
                   Chinchilla  tcctt-----t-gctct-ggtctgtg
             Brush-tailed rat  tcctt-----g-gctct-ggtctgtt
B D                    Rabbit  ccc-t-----t-gctct-gatctgct
B D                      Pika  ----------t-actct-catctatt
B D                       Pig  tccac-----t-gccct-ggtctatt
B D                    Alpaca  tccac-----t-gccct-gggctctt
               Bactrian camel  tccac-----t-gccct-gggctctt
B D                   Dolphin  tccat-----t-gccct-ggtctctt
                 Killer whale  tccat-----t-gccct-ggtctctt
             Tibetan antelope  tccac-----a-gacag-ggtttatt
B D                       Cow  tccac-----a-gacag-ggtctatt
B D                     Sheep  tccac-----a-gacag-ggtttatt
                Domestic goat  tccac-----a-gacag-ggtttatt
B D                     Horse  ---gt-----g-gctct-ggtctggg
B D          White rhinoceros  tctgt-----g-gatct-ggtctatg
B D                       Cat  ttcct-----t-gctct-ggtctatt
B D                       Dog  ttcct-----t-gctct-ggtctatt
B D                   Ferret   ttcgt-----t-gctct-ggtttgtt
B D                     Panda  tttgt-----t-gctct-tgtctgtt
               Pacific walrus  tccgt-----t-gctct-ggtctatt
                 Weddell seal  tccgt-----t-gctct-ggtctatt
             Black flying-fox  tccat-----t-gctct-catctatt
B D                   Megabat  tccat-----t-gctct-catctatt
                Big brown bat  ttcgt-----t-gctct-ggtctatt
         David's myotis (bat)  ttcat-----g-gctct-ggtctatt
B D                  Microbat  ttcat-----g-gctct-ggtctatt
B D                  Hedgehog  ga--------t-actct-ggtctgtt
B D                     Shrew  cccccc--tgc-gctca-ggtctgtt
              Star-nosed mole  gttgt-----t-gctct-ggtctgtt
B D                  Elephant  ttggt-----t-gctca-gaactgct
          Cape elephant shrew  ctggt-----t-gccggcaaacaatt
B D                   Manatee  tcggt-----t-gttgg-gaactatt
             Cape golden mole  ttggt-----t-gttca-gaaatatt
B D                    Tenrec  tgagt-----tggctaa-gaggtatt
                     Aardvark  cttct-----t--ctgg-gtgctatt
B D                 Armadillo  tcggc-----t-gctct-ggtctgct
B D                   Opossum  -----ttttgc-atgtt-ggccgatc
B D           Tasmanian devil  -----cattac-acgct-ggctgatc
B D                   Wallaby  -----cattac-acatt-ggctgatc
  D           Green seaturtle  tcttc-----t-gtatt--atttatt
B D                Coelacanth  ==========================
  D    Spiny softshell turtle  ==========================
                 Spotted gar  ==========================
B D                    Turkey  ==========================
B D                   Chicken  ==========================
  D              Mallard duck  ==========================
          Tibetan ground jay  ==========================
B D               Zebra finch  ==========================
  D    White-throated sparrow  ==========================
    Mexican tetra (cavefish)  ==========================
B D             X. tropicalis  ==========================
  D            Painted turtle  ==========================
B D        American alligator  ==========================
B D                Budgerigar  ==========================
  D               Rock pigeon  ==========================
  D       Collared flycatcher  ==========================
B D       Medium ground finch  ==========================
B D                    Lizard  ==========================
  D          Peregrine falcon  ==========================
  D              Saker falcon  ==========================
  D                    Parrot  ==========================
B D                  Platypus  ==========================
  D  Chinese softshell turtle  ==========================

Alignment block 25 of 605 in window, 79586439 - 79586491, 53 bps 
B D                     Human  c-------tg-ctggcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaaca
B D                     Chimp  c-------tg-ctggcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaaca
B D                   Gorilla  c-------tg-ctggcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaaca
B D                 Orangutan  c-------tg-ctggcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaacc
B D                    Gibbon  c-------tg-ccggcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaacc
B D                    Rhesus  c-------tg-ccagcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaact
B D       Crab-eating macaque  c-------tg-ccagcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaact
B D                    Baboon  c-------tg-ccagcaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaact
B D              Green monkey  c-------tg-ccagtaccactga-cctt--------aactgcaaatgttc-ttttaac-aaatagaact
B D                  Marmoset  c-------tg-ctggccccactga-cctt--------aactgcaaatgttc-ttttagc-aaatagaacc
B D           Squirrel monkey  c-------tg-ctggccccactaa-cctt--------aactgcaaatgttc-ttttaac-aaatagaacc
B D                  Bushbaby  c-------tg-ctggcgctgctga-cctt--------aactgcaaatgttc--tttaac-aaatagaacc
           Chinese tree shrew  c-------tg-ctggccctgc-ga-cctt--------aacagcaaatgttc-tcttaac-aaatcgagtc
B D                  Squirrel  c-------tg-ctaacactgccga-cctt--------aactgcaaacgttc-tcttaac-aaatagaacc
       Lesser Egyptian jerboa  t-------tg-ctggcgct----------------------gtaaatgttg-tcttagc-aagtaaagcc
                 Prairie vole  t-------ca-ctagcactccagg-caat--------cacgacaaatgttc-tcttaac-actcagtagc
B D           Chinese hamster  t-------ta-ctagcactccaga-tggc--------cactataaatgttc-tcttaac-aaatagtagc
               Golden hamster  t-------ta-ttagcactctaga-caac--------cactacaagtgttc-tcttaac-aaatagtagc
B D                     Mouse  t-------tg-ctagtactcctgt-caat--------cacttcacgtgttc-tcttaac-aaatactagc
B D                       Rat  t-------tg-ctagcgctcctga-caat--------cactccaaatgttc-tcttaac-aaatactaac
B D            Naked mole-rat  c-------tg-ctag--ttgctga-cctg--------tactgccaacattc-tcttaac--aacagaacc
B D                Guinea pig  c-------tc-ctgggatggctga-cctg--------tactgtcactgttc-tcctaac-aaacggaacc
                   Chinchilla  c-------ta-ctaggatggctga-cctg--------tactgccaatgttc-tgttaac-aaacagaacc
             Brush-tailed rat  c-------ta-ttaggatggctga-cctg--------tactactaatgttc-tcttaac-aaacagaaac
B D                    Rabbit  c-------tg-ccagcactg-tga-ccct--------aactgcaaatgtcc-tcttaac-aaacacaacc
B D                      Pika  ca------ag-ccagcactg-gga-cctt--------aactgcaaaagtca-ttttaac-aaatagaacc
B D                       Pig  c-------tg-ctggtactgctga-cctt--------aattgcacatgttc-tcttaac-aaataggacc
B D                    Alpaca  c-------tg-ctgccactgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
               Bactrian camel  c-------tg-ctgccgctgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                   Dolphin  c-------tg-ctggtactgatga-cctt--------aattgcagatgttc-tcttaac-aaatagaacc
                 Killer whale  c-------tg-ctggtactgatga-cctt--------aattgcagatgttc-tcttaac-aaataaaacc
             Tibetan antelope  c-------tg-ctagtactgttga-cctt--------aactgtagacattc-tcttaac-aaatataacc
B D                       Cow  c-------tg-ctagtactgctga-cctt--------aactgcagacattc-tcttaac-aaatacaact
B D                     Sheep  c-------tg-ctagtactgttga-cctt--------aactgtagtcattc-tcttaac-aaatacaacc
                Domestic goat  c-------tg-ctagtactgttga-cctt--------aactgtagacattc-tcttaac-aaatacaacc
B D                     Horse  c-------tg-ctggtactgctga-cctt--------aatggcaaatgttc-tcttaac-aaataaaacc
B D          White rhinoceros  c-------tgcctggtactgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                       Cat  c-------tg-ctggtaccgctga-cctt--------aactacaaaggttc-tctcaac-aaatagaaac
B D                       Dog  c-------tg-ctggtaccgctga-ccttaattccttaattgcaaatgttc-tcttaac-aaatagaaac
B D                   Ferret   c-------tg-ctggtactgctga-cctt---------attgcaaatggtc-tcttaac-aaatagtaac
B D                     Panda  c-------tg-ctcagaccgctga-cctt--------aattgcaaatgttc-ttttaac-aaatggaaat
               Pacific walrus  c-------tg-ctggtaccgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaaac
                 Weddell seal  c-------tg-ctggtaccgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaaac
             Black flying-fox  c-------tg-ctagtactgctgg-ccat--------aattgcaaatattc-ccttaac-aaataaagcc
B D                   Megabat  c-------tg-ctagtactgctgg-ccat--------aattgcaaatattc-ccttaac-aaataaagcc
                Big brown bat  c-------tg-ctggtaccgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
         David's myotis (bat)  c-------tg-ctggtaccgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                  Microbat  c-------tg-cgggtaccgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                  Hedgehog  c-------tg-ctggcactgctga-cctt--------aattgcaaatgttc-tcttaac-aaacagaacc
B D                     Shrew  c-------tg-ct-gcaccgctga-cctt--------aattgcaaatgttc-ccttaac-aaatagaacc
              Star-nosed mole  c-------tg-ctggtacagctga-cctt--------cactgcaaatgttctctttaac-aaatagaacc
B D                  Elephant  c-------tg-ctggcattgctga-cctt--------aattgcaaatgttc-ccttaac-aaatagaacc
          Cape elephant shrew  c-----------------tgcgga-cgtc--------aattgctaatgttc-ttctaacaaaatagaatc
B D                   Manatee  c-------tg-ctggcattgctga-cctt--------aattgcaaatgttc-tcttaacaaaatagaacc
             Cape golden mole  c-------tg-ctgctaatgctga-cctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                    Tenrec  c-------tg-tgggcactgctga-cctt--------aattgcaattgttc-tcttaac-aaatagaacc
                     Aardvark  c-------tg-caggcactgctgaccctt--------aattgcaaatgttc-tcttaac-aaatagaacc
B D                 Armadillo  c-------tg-ctggcatttctga-cctt--------aattgcaaatgctc-tcttaac-aaacagaacc
B D                   Opossum  c-------tg-ctagcattgctaa-cttt--------aattacaaatgttc-tcttaat-aaataaaacc
B D           Tasmanian devil  c-------tg-ctaacattgctaa-cttt--------aattacagatgttc-tcttaac-aaatagaacc
B D                   Wallaby  c-------tg-ctaacactgctaa-cttt--------aattacagatgctc-tcttaac-aaatagaacc
B D                  Platypus  c-------tg-ctggctttgctta-actg--------agcggtagacgtga-ttttaac-gaacagaacc
  D           Green seaturtle  -aacggtatt-ctagtgctgatga-actt--------aatggaaca----c-tgttta--aaatgaaaca
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  gc
                        Chimp  gc
                      Gorilla  gc
                    Orangutan  ac
                       Gibbon  gc
                       Rhesus  gc
          Crab-eating macaque  gc
                       Baboon  gc
                 Green monkey  gc
                     Marmoset  at
              Squirrel monkey  ct
                     Bushbaby  at
           Chinese tree shrew  at
                     Squirrel  at
       Lesser Egyptian jerboa  at
                 Prairie vole  at
              Chinese hamster  at
               Golden hamster  gt
                        Mouse  at
                          Rat  at
               Naked mole-rat  at
                   Guinea pig  ct
                   Chinchilla  at
             Brush-tailed rat  at
                       Rabbit  at
                         Pika  at
                          Pig  at
                       Alpaca  at
               Bactrian camel  at
                      Dolphin  at
                 Killer whale  at
             Tibetan antelope  at
                          Cow  gt
                        Sheep  at
                Domestic goat  at
                        Horse  at
             White rhinoceros  at
                          Cat  gt
                          Dog  at
                      Ferret   at
                        Panda  at
               Pacific walrus  at
                 Weddell seal  at
             Black flying-fox  at
                      Megabat  at
                Big brown bat  at
         David's myotis (bat)  at
                     Microbat  at
                     Hedgehog  at
                        Shrew  ac
              Star-nosed mole  at
                     Elephant  at
          Cape elephant shrew  at
                      Manatee  at
             Cape golden mole  at
                       Tenrec  at
                     Aardvark  at
                    Armadillo  at
                      Opossum  at
              Tasmanian devil  at
                      Wallaby  at
                     Platypus  at
              Green seaturtle  at
                   Coelacanth  ==
       Spiny softshell turtle  ==
                  Spotted gar  ==
                       Turkey  ==
                      Chicken  ==
                 Mallard duck  ==
           Tibetan ground jay  ==
                  Zebra finch  ==
       White-throated sparrow  ==
     Mexican tetra (cavefish)  ==
                X. tropicalis  ==
               Painted turtle  ==
           American alligator  ==
                   Budgerigar  ==
                  Rock pigeon  ==
          Collared flycatcher  ==
          Medium ground finch  ==
                       Lizard  ==
             Peregrine falcon  ==
                 Saker falcon  ==
                       Parrot  ==
     Chinese softshell turtle  ==

Alignment block 26 of 605 in window, 79586492 - 79586528, 37 bps 
B D                     Human  --------------tta-----gatactgcctc-t-ttatttgttaa---------ct-t-ctgccctg
B D                     Chimp  --------------tta-----gatactgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D                   Gorilla  --------------tta-----gatactgcctc-t-tgatttattaa---------ct-t-ctgccctg
B D                 Orangutan  --------------tta-----gatactgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D                    Gibbon  --------------tta-----gatactgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D                    Rhesus  --------------tta-----gataccgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D       Crab-eating macaque  --------------tta-----gataccgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D                    Baboon  --------------tta-----gataccgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D              Green monkey  --------------tta-----gataccgcctc-t-ttatttattaa---------ct-t-ctgccctg
B D                  Marmoset  --------------tta-----gatactgcctc-t-ttatttattaa---------ct-t-cttccctg
B D           Squirrel monkey  --------------tta-----gatactgcctc-t-ttatttattaa---------ct-t-cttccctg
B D                  Bushbaby  --------------tta-----gataccgtccc-t-ttatttattaa---------ct-t-catttccc
           Chinese tree shrew  --------------taa-----gacaccacccc-t-gtatttatgaa---------cc-t-ctgctctg
B D                  Squirrel  --------------tta-----gatactacccc-t-ttatttattaa---------cc-a-cttctctg
       Lesser Egyptian jerboa  --------------tca-----gataacacccc-t-ttatttattaa---------tt-c-cttctctg
                 Prairie vole  --------------gta-----gatgccatccc-t-ttgtttattat---------ta-t-tttttctg
B D           Chinese hamster  --------------tta-----gatgtcacccc------tttattat------------t-tttttctg
               Golden hamster  --------------tta-----gatgtcatccc-t-atgtttattg-------------t-tttttctg
B D                     Mouse  --------------gta-----gatgtcatccc-t-tcgtttattaa---------catt-ttcttctg
B D                       Rat  --------------gtc-----aatgtcatccc-t-ttgtttattaa---------tatt-ttcttctg
B D            Naked mole-rat  --------------tta-----gatatcaccca-t-gtatttatttatttac----ca-a-cttctctg
B D                Guinea pig  --------------tta-----gatactaccca-t-ccatgtat------------gc-a-cttctctg
                   Chinchilla  --------------tta-----gatcctacctg-t-gtatttat------------ga-a-tgtctctt
             Brush-tailed rat  --------------tta-----gatactgccta-t-ttattcattgacttacttagga-a-tgtctata
B D                    Rabbit  --------------tta-----gataacaccac-t-tgatgtattaa---------ct-t-cttctctg
B D                      Pika  --------------tta-----gataccaccac-t-gtatttattaa---------ct-t-cttctctg
B D                       Pig  --------------tta-----gataccaccct-t-ttatttattag---------ct-g-cc--tctg
B D                    Alpaca  --------------ttg-----ggtaccgccct-t-ttatttattaa---------ct-t-cctttctg
               Bactrian camel  --------------ttg-----ggtaccgccct-t-ttatttattaa---------ct-t-cttttctg
B D                   Dolphin  --------------tta-----gagaccgccct-t-ttatttattaa---------ct-t-cctctctg
                 Killer whale  --------------tta-----gagaccaccct-t-ttatttattaa---------ct-t-cctctctg
             Tibetan antelope  --------------tta-----gagaccattct-t-ttatttattaa---------ct-t-ccactctg
B D                       Cow  --------------tta-----gagatcactct-t-ttatttattaa---------ct-t-ccactctg
B D                     Sheep  --------------tta-----gagaccactct-t-ttatttattaa---------ct-t-ccactctg
                Domestic goat  --------------tta-----gagaccactct-t-ttatttattaa---------ct-t-ccactctg
B D                     Horse  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctctg
B D          White rhinoceros  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctttctg
B D                       Cat  --------------tca-----gataccaccct-t-ttatttattaa---------ct-t-cctctctg
B D                       Dog  --------------tta-----gataccatcct-t-ttatttattaa---------ct-t-cctccctg
B D                   Ferret   --------------tta-----gatactaccct-t-atatttattaa---------ct-t-cctctctg
B D                     Panda  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctcca
               Pacific walrus  --------------tta-----gataccatcct-t-ttatttattaa---------ct-t-cctctccg
                 Weddell seal  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctccg
             Black flying-fox  --------------tta-----gatactaccct-t-ttatttattaa---------ct-t-cttctctg
B D                   Megabat  --------------tta-----gatactaccct-t-ttatttattaa---------ct-t-cttctctg
                Big brown bat  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctctg
         David's myotis (bat)  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctctg
B D                  Microbat  --------------tta-----gataccaccct-t-ttatttattaa---------ct-t-cctctctg
B D                  Hedgehog  --------------tta-----aatcccactcc-t-ttatttattaa---------tt-t-cctctctg
B D                     Shrew  --------------tta-----gatcccaccccat-ttatttattaa---------ct-t-cctctctg
              Star-nosed mole  --------------tta-----gatcccacccc-t-ttatttattaa---------ct-t-cctctctg
B D                  Elephant  --------------tta-----gataccacctc-t-ttatttattaa---------cc-t-cctctctg
          Cape elephant shrew  --------------tta-----gaccccacccc-t-ttatttatgaa---------ct-t-cctctctg
B D                   Manatee  --------------tta-----gataccactcc-t-ttatttattaa---------ct-t-cctctctg
             Cape golden mole  --------------tta-----gataccaaccc-t-ttatttattaa---------ct-t-tctctctg
B D                    Tenrec  --------------tta-----gataccacccc-t-gtatttatgaa---------ct-t-cctttccc
                     Aardvark  --------------tta-----gatactaccct-t-ttatttattaa---------ct-t-cctctctg
B D                 Armadillo  --------------tta-----gacaccgcccc-t-ttatttattaa---------ct-t-cctctccg
B D                   Opossum  --------------ttg-----ggtcctactct-t-ttatttattaa---------ct-t-actcgcca
B D           Tasmanian devil  --------------tta-----ggtactactct-t-ttatttattaa---------ct-taactcgata
B D                   Wallaby  --------------tta-----ggtactccttt-t-ttatttattaa---------ct-t-actcgcta
B D                  Platypus  --------------ttactgtggatgcttcccc-a-ttatttattac---------tt-c-accctcta
  D           Green seaturtle  ------------tttta-----aatagcatgcc-tggccttta--------------------------
  D  Chinese softshell turtle  ttaaacactatttttta-----aatagcatgcc-tggccttta--------------------------
B D                Coelacanth  =====================================================================
  D    Spiny softshell turtle  =====================================================================
                 Spotted gar  =====================================================================
B D                    Turkey  =====================================================================
B D                   Chicken  =====================================================================
  D              Mallard duck  =====================================================================
          Tibetan ground jay  =====================================================================
B D               Zebra finch  =====================================================================
  D    White-throated sparrow  =====================================================================
    Mexican tetra (cavefish)  =====================================================================
B D             X. tropicalis  =====================================================================
  D            Painted turtle  =====================================================================
B D        American alligator  =====================================================================
B D                Budgerigar  =====================================================================
  D               Rock pigeon  =====================================================================
  D       Collared flycatcher  =====================================================================
B D       Medium ground finch  =====================================================================
B D                    Lizard  =====================================================================
  D          Peregrine falcon  =====================================================================
  D              Saker falcon  =====================================================================
  D                    Parrot  =====================================================================

Alignment block 27 of 605 in window, 79586529 - 79586531, 3 bps 
B D                     Human  ttt
B D                     Chimp  ttt
B D                   Gorilla  ttt
B D                 Orangutan  ttt
B D                    Gibbon  ttt
B D                    Rhesus  ttt
B D       Crab-eating macaque  ttt
B D                    Baboon  ttt
B D              Green monkey  ttt
B D                  Marmoset  ttt
B D           Squirrel monkey  ttt
B D                  Bushbaby  ttt
           Chinese tree shrew  ttt
B D                  Squirrel  ttt
       Lesser Egyptian jerboa  ttt
                 Prairie vole  ttt
B D           Chinese hamster  ttt
               Golden hamster  ttt
B D                     Mouse  ttt
B D                       Rat  ttt
B D            Naked mole-rat  ttt
B D                Guinea pig  ttt
                   Chinchilla  ttt
             Brush-tailed rat  ttt
B D                    Rabbit  tct
B D                      Pika  tct
B D                       Pig  ttt
B D                    Alpaca  ttt
               Bactrian camel  ttt
B D                   Dolphin  ttt
                 Killer whale  ttt
             Tibetan antelope  ttt
B D                       Cow  ttt
B D                     Sheep  ttt
                Domestic goat  ttt
B D                     Horse  ttt
B D          White rhinoceros  ttt
B D                       Cat  ttt
B D                       Dog  ttt
B D                   Ferret   ttt
B D                     Panda  ttt
               Pacific walrus  ttt
                 Weddell seal  ttt
             Black flying-fox  ttt
B D                   Megabat  ttt
                Big brown bat  ttt
         David's myotis (bat)  ttt
B D                  Microbat  ttt
B D                  Hedgehog  tat
B D                     Shrew  ttt
              Star-nosed mole  ttt
B D                  Elephant  ttt
          Cape elephant shrew  ttt
B D                   Manatee  ttt
             Cape golden mole  ctt
B D                    Tenrec  ttt
                     Aardvark  ttt
B D                 Armadillo  ttt
B D                   Opossum  ttt
B D           Tasmanian devil  ttt
B D                   Wallaby  ttt
B D                  Platypus  ttt
  D       Collared flycatcher  ttc
  D    White-throated sparrow  ttc
B D       Medium ground finch  ttc
           Tibetan ground jay  ttc
  D                    Parrot  tcc
  D           Green seaturtle  ttc
  D  Chinese softshell turtle  ttc
B D                Coelacanth  ===
  D    Spiny softshell turtle  ===
                 Spotted gar  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D              Mallard duck  ===
B D               Zebra finch  ===
    Mexican tetra (cavefish)  ===
B D             X. tropicalis  ===
  D            Painted turtle  ===
B D        American alligator  ===
B D                Budgerigar  ===
  D               Rock pigeon  ===
B D                    Lizard  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===

Alignment block 28 of 605 in window, 79586532 - 79586573, 42 bps 
B D                     Human  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                     Chimp  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                   Gorilla  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                 Orangutan  aaatt-agtagcagg--------tagtgctt-agaacggtgat-----atgaaaa---------------
B D                    Gibbon  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                    Rhesus  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D       Crab-eating macaque  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                    Baboon  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D              Green monkey  aaatt-agtagcagg--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D                  Marmoset  aaatt-agtagcaag--------gagtgctt-agaacggtgat-----atgaaaa---------------
B D           Squirrel monkey  aaatt-agtagcagg--------gagtgctt-agaacagtgat-----atgaaaa---------------
B D                  Bushbaby  aaatt-agtagcagg--------gagtgctt-agaatggtgat-----atgaaaa---------------
           Chinese tree shrew  aaatt-agtggcagg--------gagggctc-agaacagtgataggaaatgaaat---------------
B D                  Squirrel  aaatt-cctagcagg--------gagtactt-agaacactgat-----accaaaa---------------
       Lesser Egyptian jerboa  aaatg-agtagctgg--------gagtactc-agaacgataat-----atgaaaa---------------
                 Prairie vole  aaatt-agtaaccgg--------gagtactc-agaaggatcaa-----atgaaaa---------------
B D           Chinese hamster  aaatt-agaagccag--------gagtactc-agaacgatgaa-----atgaaaa---------------
               Golden hamster  aaatt-agtagccag--------gagtactc-agaatgttgaa-----atgaaaa---------------
B D                     Mouse  gaatt-agtagccag--------tagtactc-agaatgttgaa-----atgggaa---------------
B D                       Rat  aaattaagtagcctg--------tggtactc-agaatgttgaa-----atgcaaa---------------
B D            Naked mole-rat  aaatt-agtagcggg--------gaatacat-agaatagaga-------tgaaaa---------------
B D                Guinea pig  aaatt-agtag------------ggttacac-agaatagagac-----atgaaaa---------------
                   Chinchilla  aaatt-agtagg-----------gaatacat-agaacagagat-----gtgaaaa---------------
             Brush-tailed rat  aaatt-agtaaggaacatgtagtgaacacat-tgaatagagat-----atgaaaa---------------
B D                    Rabbit  aactt-agtagcagg--------cagtgctt-agaacgatgac-----atgaaaa---------------
B D                      Pika  aaatt-agtagcagg--------gagtactt-agaatgatgat-----atgaaaa---------------
B D                       Pig  aaatt-agtagcagg--------gaatgctt-agaacggtaat-----atgaaaa---------------
B D                    Alpaca  aaatt-agtagcagg--------gaatgctt-agaacggtaat-----atgaaaa---------------
               Bactrian camel  aaatt-agtagcagt--------gaatgctt-agaacggtaat-----atgaaaa---------------
B D                   Dolphin  aaatt-agtagcaga--------gaatgctt-agaacggtaat-----atgaaaa---------------
                 Killer whale  aaatt-agtagcaga--------gaatgctt-agaacggtaat-----atgaaaa---------------
             Tibetan antelope  aaatt-agtagcagg--------gaatgctt-agaacggtagt-----atgaaaa---------------
B D                       Cow  aaatt-agtagcagg--------gaatgctt-agaacggtaat-----atgaaaa---------------
B D                     Sheep  aaatt-agtagcagg--------gaatgctt-agaacggtagt-----atgaaaa---------------
                Domestic goat  aaatt-agtagcagg--------ggatgctt-agaacggtagt-----atgaaaa---------------
B D                     Horse  aaatt-agtagcaag--------gaatgctt-agaatggtgat-----atgaaaa---------------
B D          White rhinoceros  aaatt-agtagcagg--------gaatgctt-agaatggtgat-----atgaaaa---------------
B D                       Cat  aaatt-agtagcagg--------gaattctt-aaaaccaggat-----atgaaaa---------------
B D                       Dog  aaatt-agtagcagg--------gaatgctt-agaaccatgat-----atgaaaa---------------
B D                   Ferret   aaatt-agtagcagg--------gaacgcttaagaaccgtgat-----atgaaaa---------------
B D                     Panda  aaatt-agtagcagg--------gaatgctt-agaaccatgat-----atcaaaa---------------
               Pacific walrus  aaatt-agtagcagg--------gaatgctt-agaaccatgat-----atgaaaa---------------
                 Weddell seal  aaatt-agtagcagg--------gaatgctt-agaaccatgat-----atgaaaa---------------
             Black flying-fox  aaatt-agtagcagg--------gaatggtt-agaatggtgat-----atgaaaa---------------
B D                   Megabat  aaatt-agtagcagg--------gaatggtt-agaatggtgat-----atgaaaa---------------
                Big brown bat  aaatt-agtagcagg--------gaatgctt-agaacagtaat-----atgaaaa---------------
         David's myotis (bat)  aaatt-agtagcagg--------gaatgctt-agaacagtaat-----atgaaaa---------------
B D                  Microbat  aaatt-agtagcagg--------gaatgctt-agaacagtaat-----atgaaaa---------------
B D                  Hedgehog  aaatt-agtagcctg--------ggatgctt-agaatggtgat-----atgaaaa---------------
B D                     Shrew  aaatt-agtagcagg--------ggatgctt-cgaatggtgat-----atgaaaa---------------
              Star-nosed mole  aaatt-agtagcaag--------ggatgctt-agaatggtgat-----atgaaaa---------------
B D                  Elephant  aaatt-agtagcagg--------gagtgctc-agaatggtgat-----acgaaaa---------------
          Cape elephant shrew  aagtg-agttgcagg--------gagtgcta-agagctgtgat-----atgaaaa---------------
B D                   Manatee  gaatt-agtagcagg--------gagtgctt-agaacgctgat-----atgaaaa---------------
             Cape golden mole  aaatt-agtagcggg--------gagtgctt-agaaaggtgat-----ctgaaaa---------------
B D                    Tenrec  acatt-agtagcagg--------cagtgctt-aggagagatct-----agaaaaa---------------
                     Aardvark  aaatt-agtagcaag--------gagtgctt-agaatggtgat-----atgaaaa---------------
B D                 Armadillo  aaatc-agaggcagg--------gtatgctt-aggatggtgat-----atgaaaa---------------
B D                   Opossum  aaatt-agtagcagg--------gagagctt-gaaacggtgat-----atgaaaa---------------
B D           Tasmanian devil  aaatt-agtagcagg--------gagtgctt-ggaacggtgat-----atgaaaa---------------
B D                   Wallaby  aaatt-agtagcagg--------gagtgttt-ggaatggtgat-----atgaaaa---------------
B D                  Platypus  aaatt-agtaacaga--------gagtgctc-agtactgtgat-----atgaaaa---------------
  D       Collared flycatcher  acatt-aataacagg--------agattctt-a---------------ctgacaaattatcttaaaatc-
  D    White-throated sparrow  acatt-aataacagg--------agattctt-a---------------ctgacaa---------------
B D       Medium ground finch  acatt-aataacagg--------agattctt-a---------------ctgacaa---------------
           Tibetan ground jay  acatt-aataacagg--------agattctt-a---------------ctggcaa---------------
  D                    Parrot  acatt-aatagcagc--------agattcct-a---------------ctgacaa---------------
B D        American alligator  aaatt-aatagcagg--------aggatctt-a---------------gcggtag--------------g
  D           Green seaturtle  gcatt-aataacatg--------aggatctt-a---------------gtgatag---------------
  D  Chinese softshell turtle  acatt-aataacagg--------aagagctt-a---------------gtaatag---------------
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D               Zebra finch  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================

                        Human  -----------tg
                        Chimp  -----------tg
                      Gorilla  -----------tg
                    Orangutan  -----------tg
                       Gibbon  -----------tg
                       Rhesus  -----------tg
          Crab-eating macaque  -----------tg
                       Baboon  -----------tg
                 Green monkey  -----------tg
                     Marmoset  -----------tg
              Squirrel monkey  -----------tg
                     Bushbaby  -----------tg
           Chinese tree shrew  -----------tg
                     Squirrel  -----------tg
       Lesser Egyptian jerboa  -----------tg
                 Prairie vole  -----------tg
              Chinese hamster  -----------tg
               Golden hamster  -----------ta
                        Mouse  -----------tg
                          Rat  -----------tg
               Naked mole-rat  -----------tg
                   Guinea pig  -----------tg
                   Chinchilla  -----------cg
             Brush-tailed rat  -----------tg
                       Rabbit  -----------tg
                         Pika  -----------tg
                          Pig  -----------tg
                       Alpaca  -----------tg
               Bactrian camel  -----------tg
                      Dolphin  -----------tg
                 Killer whale  -----------tg
             Tibetan antelope  -----------tg
                          Cow  -----------tg
                        Sheep  -----------tg
                Domestic goat  -----------tg
                        Horse  -----------tg
             White rhinoceros  -----------tg
                          Cat  -----------tg
                          Dog  -----------tg
                      Ferret   -----------tg
                        Panda  -----------tg
               Pacific walrus  -----------tg
                 Weddell seal  -----------tg
             Black flying-fox  -----------tg
                      Megabat  -----------tg
                Big brown bat  -----------tg
         David's myotis (bat)  -----------tg
                     Microbat  -----------tg
                     Hedgehog  -----------tg
                        Shrew  -----------tg
              Star-nosed mole  -----------tg
                     Elephant  -----------tg
          Cape elephant shrew  -----------tg
                      Manatee  -----------tg
             Cape golden mole  -----------tg
                       Tenrec  -----------cc
                     Aardvark  -----------tg
                    Armadillo  -----------tg
                      Opossum  -----------tt
              Tasmanian devil  -----------tt
                      Wallaby  -----------tt
                     Platypus  -----------tt
          Collared flycatcher  -------------
       White-throated sparrow  -------------
          Medium ground finch  -------------
           Tibetan ground jay  -------------
                       Parrot  -------------
           American alligator  aaaa---------
              Green seaturtle  ----cacaatt--
     Chinese softshell turtle  ----cacaatt--
                   Coelacanth  =============
       Spiny softshell turtle  =============
                  Spotted gar  =============
                       Turkey  =============
                      Chicken  =============
                 Mallard duck  =============
                  Zebra finch  =============
     Mexican tetra (cavefish)  =============
                X. tropicalis  =============
               Painted turtle  =============
                   Budgerigar  =============
                  Rock pigeon  =============
                       Lizard  =============
             Peregrine falcon  =============
                 Saker falcon  =============

Alignment block 29 of 605 in window, 79586574 - 79586693, 120 bps 
B D                     Human  ag-gtt---------gc-----------------t----tt---------aa------ag---------a
B D                     Chimp  ag-gtt---------gc-----------------t----tt---------aa------ag---------a
B D                   Gorilla  ag-gtt---------gc-----------------t----tt---------aa------ag---------a
B D                 Orangutan  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
B D                    Gibbon  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
B D                    Rhesus  ag-gtt---------gc----------------------tt---------aa------aa---------a
B D       Crab-eating macaque  ag-gtt---------gc----------------------tt---------aa------aa---------a
B D                    Baboon  ag-gtt---------gc----------------------tt---------aa------aa---------a
B D              Green monkey  ag-gtt---------gc----------------------tt---------aa------aa---------a
B D                  Marmoset  ag-gtt---------gc---------------ttt----tt---------aa------aa---------a
B D           Squirrel monkey  aa-gtt---------gc----------------------tt---------aa------aa---------a
B D                  Bushbaby  ag-ctt---------gc-----------------t----tt---------aa------aa---------a
           Chinese tree shrew  ag-gtt---------gc----------------------tt---------aa------aa---------a
B D                  Squirrel  ag-gtt---------gc----------------tt----aa---------aa------aa---------a
       Lesser Egyptian jerboa  ag-ctt---------gc---------------tta----aa---------ta------aa---------a
                 Prairie vole  ag-gtt---------gc-----------ttttttt----tt---------ta------aa---------a
B D           Chinese hamster  aa-gtt---------gc----------------tt----tt---------ta------aa---------a
               Golden hamster  aa-gtt---------gc----------------tt----ta---------aa------aa---------g
B D                     Mouse  ag-gtt---------ac--aaaaaaaaaa----------------------a------aa---------a
B D                       Rat  ag-gtt---------acctacaaaaaaaatactta----aa---------ta------aa---------a
B D            Naked mole-rat  ag-gtt---------g-----------------tt----tt---------aa------ag---------a
B D                Guinea pig  ag-gtt---------gc------tttctttttttt----tt---------aa------aa---------a
                   Chinchilla  ag-gtt---------gc----------------tt----tt---------ta------aa---------a
             Brush-tailed rat  ag-att---------gt----------------tt----aa---------aa------aa---------a
B D                    Rabbit  ag-gtt---------gc----------------tt----tttttaaaaatta------aa---------a
B D                      Pika  ag-gtt---------gt----------------tt----tt-----------------------------
B D                       Pig  ag-gtt---------gc-----------------t----tt-------a-aa------aa---------a
B D                    Alpaca  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
               Bactrian camel  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
B D                   Dolphin  ag-att---------gc-----------------t----tt-------agaa------aa---------a
                 Killer whale  ag-att---------gc-----------------t----tt-------agaa------aa---------a
             Tibetan antelope  ag-gtt---------gc-----------------t----t----------aa------aa---------a
B D                       Cow  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
B D                     Sheep  ag-gtt---------gc-----------------t----tt-------aaaa------aa---------a
                Domestic goat  ag-gtt---------gc-----------------t----t----------aa------aa---------a
B D                     Horse  gg-gtt---------gc-----------------t----ta---------a------------------a
B D          White rhinoceros  gg-gtt---------gc-----------------a----tt---------a------------------a
B D                       Cat  ag-gtt---------gc-----------------t----tt---------aa------aaaaaa-----a
B D                       Dog  ag-gtt---------gc-----------------t----tt---------aa------aagaa------a
B D                   Ferret   ag-gtt---------gc-----------------t----tt---------aa------aaaaaattttta
B D                     Panda  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
               Pacific walrus  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
                 Weddell seal  ag-gtt---------gc-----------------t----ct------------------a---------a
             Black flying-fox  ag-gtt---------gc-----------------t----tt--tttttttaa------ag---------a
B D                   Megabat  ag-gtt---------gc-----------------t----tt--tttttttaa------ag---------a
                Big brown bat  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
         David's myotis (bat)  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
B D                  Microbat  ag-gtt---------gc-----------------t----tt-----aaaaaa------aa---------a
B D                  Hedgehog  ag-gtg---------gc-----------------t----t-----------------------------a
B D                     Shrew  ag-gtt---------gc-----------------t----tt----------a------aa---------a
              Star-nosed mole  ag-gtt---------gc-----------------t----tt----------t------aa---------a
B D                  Elephant  ag-gtt---------gc-----------------t----tg---------ga------aa---------a
          Cape elephant shrew  at-gttaaaaaaaaaga-----------------a----ag---------aa------aa---------a
B D                   Manatee  ag-gtt---------gc-----------------t----tt---------aa------aa---------a
             Cape golden mole  ag-gtt---------gc-----------------tt---ta---------aa------aa---------a
B D                    Tenrec  ag-gtt---------gc-----------------tcgggtg---------aa------aa---------a
                     Aardvark  ag-gtt---------gc-----------------t----ta---------aa------aa---------a
B D                 Armadillo  ag-gtt---------gc-----------------t----ga---------gg------aa---------a
B D                   Opossum  aa-act---------gc-----------------t----tg---------aa------aa---------a
B D           Tasmanian devil  aa-act---------gc-----------------t----tg---------ga------aa---------a
B D                   Wallaby  aa-act---------gc-----------------t----tg---------aa------aa---------a
B D                  Platypus  ag-gct---------cc-----------------t----tt---------ca------aa---------a
  D       Collared flycatcher  ----------------------------------------------------------------------
  D    White-throated sparrow  ---att---------ac-----------------c----tt---------aa------ga---------a
B D       Medium ground finch  ---att---------ac-----------------c----tt---------aa------ga---------a
B D               Zebra finch  -aaatt---------ac-----------------c----tt---------aa------aa---------a
           Tibetan ground jay  ---att---------ac-----------------c----tt---------aa------aa---------a
  D                    Parrot  ---att---------ac-----------------a----tt---------aa------aa---------a
B D        American alligator  ggtctt---------at-----------------t----aa---------aa------ca---------a
  D           Green seaturtle  ---------------at-----------------c----tt---------agtaaaacaa---------a
  D  Chinese softshell turtle  ---------------at-----------------c----tt---------agtgaaacaa---------a
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D             X. tropicalis  ======================================================================
  D            Painted turtle  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================

                        Human  aaa------------------------------------t----------c-----------tttttgct
                        Chimp  aaa------------------------------------t----------c-----------tttttgct
                      Gorilla  aaa------------------------------------t----------c-----------tttttgct
                    Orangutan  aaa------------------------------------t----------c-----------tttttgct
                       Gibbon  aaa------------------------------------t----------c-----------tttttgct
                       Rhesus  aaa------------------------------------t----------c-----------tttttgct
          Crab-eating macaque  aaa------------------------------------t----------c-----------tttttgct
                       Baboon  aaa------------------------------------t----------c-----------tttttgct
                 Green monkey  aaa------------------------------------t----------c-----------tttttact
                     Marmoset  aaaa----------------aa------agg--------t----------c-----------cttttgct
              Squirrel monkey  aaaa----------------aa------aag--------t----------c-----------cttttgct
                     Bushbaby  aaaa----------------aaaaaaagaag--------t----------c-----------tttttgtt
           Chinese tree shrew  aag------------------------------------t----------c-----------tttttgct
                     Squirrel  aaa------------------------------------a----------a-----aaagacgttttgct
       Lesser Egyptian jerboa  aga------------------------------------c----------a-----------tttatgct
                 Prairie vole  aga------------------------------------a----------c-----------tttttatt
              Chinese hamster  agg------------------------------------g----------g--ggggggc---ttttgtt
               Golden hamster  tgg------------------------------------g----------gtaggggggcactttttgtt
                        Mouse  agg------------------------------------a-------------ggggaggaaattttgtt
                          Rat  aga------------------------------------a----------c--gggggaggaattttgtt
               Naked mole-rat  aag------------------------------------g-------tttt---------tttttttgct
                   Guinea pig  caa------------------------------------g----------a---------tttttttgct
                   Chinchilla  aaa------------------------------------g----------a---------tatttttgct
             Brush-tailed rat  aag------------------------------------a----------t---------ttcttttgct
                       Rabbit  aag------------------------------------a----------c-----------tttttgct
                         Pika  aag------------------------------------t----------c-----------tttttgct
                          Pig  aaaa----------------aaag---------------t----------c----------ttttttgct
                       Alpaca  aaaa----------------ag----------------------------------------tctttgct
               Bactrian camel  aaaa----------------aaag---------------t----------c-----------tttttgct
                      Dolphin  aaaa----------------aacg---------------t----------c-----------tttttgct
                 Killer whale  aaaa----------------aacg---------------t----------c-----------tttttgct
             Tibetan antelope  aaaa----------------aaag---------------t----------c----------ttttttgct
                          Cow  aaaa----------------aaag---------------t----------c----------ttttttgct
                        Sheep  aaaa----------------aaag---------------t----------c----------ttttttgct
                Domestic goat  aaaa----------------aaag---------------t----------c----------ttttttgct
                        Horse  aaaa----------------aaaagt-------------c----------t-----------ttttttct
             White rhinoceros  aaaa----------------aaag---------------t----------c-----------tttttgct
                          Cat  aaaa----------------aaag---------------c----------c-----------ttcttgcc
                          Dog  aaaa----------------aaag---------------t----------c-------tttttttttgct
                      Ferret   aaaa----------------aagg---------------t----------c-----------tttttgct
                        Panda  aaaa----------------aaag---------------t----------c-----------tttttgct
               Pacific walrus  aaaa----------------aaaa---------------t----------c-----------tttttgct
                 Weddell seal  aaaa----------------aaag---------------t----------c-----------tttttgct
             Black flying-fox  ---------------------------------------g----------c-----------tttttgct
                      Megabat  ---------------------------------------g----------c-----------tttttgct
                Big brown bat  aaaa----------------a---aggc-----------c----------t-----------tttttgct
         David's myotis (bat)  aaaa----------------agagagag-----------g----------c-----------tttttgct
                     Microbat  aaaa----------------agagagag-----------g----------c-----------tttttgct
                     Hedgehog  aaaa----------------aaag---------------t----------c-----------ttcttgct
                        Shrew  aaaa----------------aaaaaataaaaggtcttttt----------t-----------tttttcct
              Star-nosed mole  aaaa----------------aaag---------------t----------c-----------tttttgct
                     Elephant  aaaa----------------aaag---------------c----------c-----------tttttgct
          Cape elephant shrew  aaaataaaagaa--tgaaagaaag---------------t----------c-----------tttttgct
                      Manatee  aaaa-------------aaagaag---------------t----------c-----------ttttagct
             Cape golden mole  taaa----------taaaaaaaag---------------t---------ct-----------tttttgct
                       Tenrec  aagagaaagaaaatgaaaaaaaag---------------ttttgttttgtt-----------tttttgct
                     Aardvark  --------------------aaag---------------t----------c-----------tttttgct
                    Armadillo  aaaa--------------aaaaaa---------------c----------a-----------tttttgct
                      Opossum  aaa-------------------------------------------------------------tctatt
              Tasmanian devil  aaaa----------------at-----------------c----------c-----------tttctgtt
                      Wallaby  aaaa----------------at-----------------c----------c-----------attctgtt
                     Platypus  atc------------------------------------c----------t-----------tttttgct
          Collared flycatcher  -acg-----------------------------------t----------a-----------tttttgcc
       White-throated sparrow  cacg-----------------------------------t----------a----------ttttttgcc
          Medium ground finch  cacg-----------------------------------t----------a-----------tttttgcc
                  Zebra finch  catg-----------------------------------t----------a----------tttcttgcc
           Tibetan ground jay  caca-----------------------------------t----------a----------ttttttgcc
                       Parrot  caca-----------------------------------t----------a-----------tttttgcc
           American alligator  aaca-----------------------------------c----------a----------atttttgtc
              Green seaturtle  aata-----------------------------------c----------a----------atttttgtc
     Chinese softshell turtle  aata-----------------------------------c----------a----------gtttttatc
                   Coelacanth  ======================================================================
       Spiny softshell turtle  ======================================================================
                  Spotted gar  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                X. tropicalis  ======================================================================
               Painted turtle  ======================================================================
                   Budgerigar  ======================================================================
                  Rock pigeon  ======================================================================
                       Lizard  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================

                        Human  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                        Chimp  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                      Gorilla  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                    Orangutan  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                       Gibbon  tca-cagtgaataac-aaagcacagtaattcaaactagtt-agcttt-ctatggtt-------c------
                       Rhesus  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
          Crab-eating macaque  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                       Baboon  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                 Green monkey  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                     Marmoset  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
              Squirrel monkey  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                     Bushbaby  acg-cagtgaataac-aaagcacagtaattcaaagtggtt-agcttt-ctatggtt-------c------
           Chinese tree shrew  tca-cagtgaataac-aaagcacagtaattcacagtactt-agcttt-ctatgatt-------c------
                     Squirrel  tca-caatgaataac-aaaacacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
       Lesser Egyptian jerboa  tca-gagtaaataag-aaagcacagcaattcaaagtactt-acctta-ctatcgct-------c------
                 Prairie vole  tta-cactgaaatat-aaagcataatgattcaaaatgctt-acctttccaaaaagaaaataaaa------
              Chinese hamster  tta-cagtgaataac---ggcacaataat-------gctt-acctct---------------aa------
               Golden hamster  tta-cagagaataat---ggcacaataatttaaaacactt-atctct-------------aaaa------
                        Mouse  tta-cactgactagc-aaagcccaatgattcaatatgttt-accttt-ctatggtt-taaaaaa------
                          Rat  tta-cactgact-----aagcacaatggttcaatat-taa-accttt-ctatggttaaaaaaaa------
               Naked mole-rat  tca-ctgtgaataac-aaagcaccgtaattcaaagcagtt-agcttt-ctatggtt-------c------
                   Guinea pig  tca-ctgtgaataac-ggagtacagtaattccaagtagtt-agcttt-ctatggtt-------c------
                   Chinchilla  tca-ctgtgaataac-aaggcacagtaatacaaagtagtt-agcttt-ctatggtt-------c------
             Brush-tailed rat  tca-ctgtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c-----a
                       Rabbit  tca-cagtgaataac-aaagcagagtaattcaaagtagtt-agcttt-ctgtggtt-------c------
                         Pika  tca-cagtgaagaac-aaagcagactaattcaaagtagtt-agcttt-ctatggtt-------c------
                          Pig  tca-cagggaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                       Alpaca  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
               Bactrian camel  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                      Dolphin  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
                 Killer whale  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
             Tibetan antelope  tca-cagtgaataac-aaagcacagtaattcaaagtagtttagcttt-ctatggtt-------c------
                          Cow  tca-cagtgaataac-aaagcacagtaattcaaagtagttcagcttt-ctatggtt-------c------
                        Sheep  tca-cagtgaataac-aaagcccagtaattcaaagtagttcagcttt-ctatggtt-------c------
                Domestic goat  tca-cagtgaataac-aaagcacagtaattcaaagtagttcagcttt-ctatggtt-------c------
                        Horse  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------
             White rhinoceros  tca-cagtgaataac-aaagcacagtaattcaaactagtt-agcttt-ctatggtt-------c------
                          Cat  tca-cagtgaataac-aaagcacagtaattcaaagtagtt-agcttt-ctatggtt-------c------