Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 580 in window, 47759731 - 47759754, 24 bps 
B D                   Human  cgagatagtgccactgtactccag
B D                   Chimp  cgagatagtgccactgtactccag
B D               Orangutan  cgagatcgtgccattgtactccag
B D                  Gibbon  cgagatcgtgccactgcactccag
B D         Squirrel monkey  --------------------ccag
B D                Squirrel  -----------caccgggttccat
B D                  Medaka  ------------------------
    Lesser Egyptian jerboa  ------------------------
B D                    Pika  ========================
        Chinese tree shrew  ========================
             Big brown bat  ========================
             Domestic goat  ------------------------
B D                   Sheep  ------------------------
B D                     Cow  ========================
B D              Guinea pig  ========================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ========================
  D        Peregrine falcon  ========================
  D            Saker falcon  ========================
  D             Rock pigeon  ========================
  D         Green seaturtle  ========================
  D          Painted turtle  ========================
B D               Tetraodon  ------------------------
B D             Stickleback  ------------------------
        Southern platyfish  ------------------------
       Pundamilia nyererei  ------------------------
               Zebra mbuna  ------------------------
     Burton's mouthbreeder  ------------------------
       Princess of Burundi  ------------------------
B D            Nile tilapia  ------------------------
B D      American alligator  ========================
B D     Crab-eating macaque  ------------------------
        Tibetan ground jay  ========================
          Tibetan antelope  ------------------------
B D                 Dolphin  ------------------------
          Brush-tailed rat  ========================
           Star-nosed mole  ------------------------
              Killer whale  ------------------------
B D          Naked mole-rat  ========================
                  Aardvark  ------------------------
B D                 Megabat  ------------------------
B D                     Pig  ========================
      David's myotis (bat)  ========================
              Weddell seal  ------------------------
B D                   Panda  ========================
B D                 Ferret   ========================
B D                  Baboon  ========================
            Pacific walrus  ------------------------
                Chinchilla  ========================
          Black flying-fox  ------------------------
B D                     Dog  ========================
B D                     Cat  ------------------------
            Bactrian camel  ------------------------
B D                  Alpaca  ------------------------
B D               Armadillo  ========================
B D                 Manatee  ------------------------
B D                Elephant  ------------------------
B D        White rhinoceros  ------------------------
B D                   Horse  ------------------------
B D                Bushbaby  ========================
B D                Marmoset  ========================
B D            Green monkey  ------------------------
B D                  Rhesus  ------------------------

Alignment block 2 of 580 in window, 47759755 - 47759798, 44 bps 
B D                   Human  cctgggcgacagagtgagactcca------tct-caaaaaataataaaata
B D                   Chimp  cctgggcgacagagtgagactcca------tct-caaaaaataataaaata
B D               Orangutan  cctgggcgacagagtgagactcca------tct-caaaaaataataaaata
B D         Squirrel monkey  cctgggcagcatgacaaaaccccactggtttctacaaaagagaaaaaagta
B D                Squirrel  cctcagcaccggag-------------------------------------
B D                  Medaka  ---------------------------------------------------
    Lesser Egyptian jerboa  ---------------------------------------------------
B D                    Pika  ===================================================
        Chinese tree shrew  ===================================================
             Big brown bat  ===================================================
             Domestic goat  ---------------------------------------------------
B D                   Sheep  ---------------------------------------------------
B D                     Cow  ===================================================
B D              Guinea pig  ===================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ===================================================
  D        Peregrine falcon  ===================================================
  D            Saker falcon  ===================================================
  D             Rock pigeon  ===================================================
  D         Green seaturtle  ===================================================
  D          Painted turtle  ===================================================
B D               Tetraodon  ---------------------------------------------------
B D             Stickleback  ---------------------------------------------------
        Southern platyfish  ---------------------------------------------------
       Pundamilia nyererei  ---------------------------------------------------
               Zebra mbuna  ---------------------------------------------------
     Burton's mouthbreeder  ---------------------------------------------------
       Princess of Burundi  ---------------------------------------------------
B D            Nile tilapia  ---------------------------------------------------
B D      American alligator  ===================================================
B D     Crab-eating macaque  ---------------------------------------------------
        Tibetan ground jay  ===================================================
          Tibetan antelope  ---------------------------------------------------
B D                 Dolphin  ---------------------------------------------------
          Brush-tailed rat  ===================================================
           Star-nosed mole  ---------------------------------------------------
              Killer whale  ---------------------------------------------------
B D          Naked mole-rat  ===================================================
                  Aardvark  ---------------------------------------------------
B D                 Megabat  ---------------------------------------------------
B D                     Pig  ===================================================
      David's myotis (bat)  ===================================================
              Weddell seal  ---------------------------------------------------
B D                   Panda  ===================================================
B D                 Ferret   ===================================================
B D                  Baboon  ===================================================
            Pacific walrus  ---------------------------------------------------
                Chinchilla  ===================================================
          Black flying-fox  ---------------------------------------------------
B D                     Dog  ===================================================
B D                     Cat  ---------------------------------------------------
            Bactrian camel  ---------------------------------------------------
B D                  Alpaca  ---------------------------------------------------
B D               Armadillo  ===================================================
B D                 Manatee  ---------------------------------------------------
B D                Elephant  ---------------------------------------------------
B D        White rhinoceros  ---------------------------------------------------
B D                   Horse  ---------------------------------------------------
B D                Bushbaby  ===================================================
B D                Marmoset  ===================================================
B D            Green monkey  ---------------------------------------------------
B D                  Rhesus  ---------------------------------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 2 and 3 in window
B D        Squirrel monkey 621bp

Alignment block 3 of 580 in window, 47759799 - 47759799, 1 bps 
B D                   Human  t
B D                  Medaka  -
    Lesser Egyptian jerboa  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  -
B D                   Sheep  -
B D                     Cow  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  -
B D                 Dolphin  -
          Brush-tailed rat  =
           Star-nosed mole  -
              Killer whale  -
B D          Naked mole-rat  =
                  Aardvark  -
B D                 Megabat  -
B D                     Pig  =
      David's myotis (bat)  =
              Weddell seal  -
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  -
B D                     Dog  =
B D                     Cat  -
            Bactrian camel  -
B D                  Alpaca  -
B D               Armadillo  =
B D                 Manatee  -
B D                Elephant  -
B D        White rhinoceros  -
B D                   Horse  -
B D                Squirrel  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N
B D               Orangutan  -
B D                   Chimp  -

Alignment block 4 of 580 in window, 47759800 - 47759815, 16 bps 
B D                   Human  aatataaataaataaa--------
B D                   Chimp  -----aaataaataaa--------
B D               Orangutan  -------------aaa--------
B D                Squirrel  -------aaaaataaa--------
B D               Armadillo  --------aaaatagagcaattta
B D                  Medaka  ------------------------
    Lesser Egyptian jerboa  ------------------------
B D                    Pika  ========================
        Chinese tree shrew  ========================
             Big brown bat  ========================
             Domestic goat  ------------------------
B D                   Sheep  ------------------------
B D                     Cow  ========================
B D              Guinea pig  ========================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ========================
  D        Peregrine falcon  ========================
  D            Saker falcon  ========================
  D             Rock pigeon  ========================
  D         Green seaturtle  ========================
  D          Painted turtle  ========================
B D               Tetraodon  ------------------------
B D             Stickleback  ------------------------
        Southern platyfish  ------------------------
       Pundamilia nyererei  ------------------------
               Zebra mbuna  ------------------------
     Burton's mouthbreeder  ------------------------
       Princess of Burundi  ------------------------
B D            Nile tilapia  ------------------------
B D      American alligator  ========================
B D     Crab-eating macaque  ------------------------
B D         Squirrel monkey  ========================
        Tibetan ground jay  ========================
          Tibetan antelope  ------------------------
B D                 Dolphin  ------------------------
          Brush-tailed rat  ========================
           Star-nosed mole  ------------------------
              Killer whale  ------------------------
B D          Naked mole-rat  ========================
                  Aardvark  ------------------------
B D                 Megabat  ------------------------
B D                     Pig  ========================
      David's myotis (bat)  ========================
              Weddell seal  ------------------------
B D                   Panda  ========================
B D                 Ferret   ========================
B D                  Baboon  ========================
            Pacific walrus  ------------------------
                Chinchilla  ========================
          Black flying-fox  ------------------------
B D                     Dog  ========================
B D                     Cat  ------------------------
            Bactrian camel  ------------------------
B D                  Alpaca  ------------------------
B D                 Manatee  ------------------------
B D                Elephant  ------------------------
B D        White rhinoceros  ------------------------
B D                   Horse  ------------------------
B D                Bushbaby  ========================
B D                Marmoset  ========================
B D            Green monkey  ------------------------
B D                  Rhesus  ------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 5 of 580 in window, 47759816 - 47759826, 11 bps 
B D                   Human  taaataaaata
B D                   Chimp  taaataaaata
B D               Orangutan  ttaaagaaata
B D                Squirrel  taaataaaata
            Star-nosed mole  tgaatgaaatg
B D               Armadillo  tacaagaaaca
B D                  Medaka  -----------
    Lesser Egyptian jerboa  -----------
B D                    Pika  ===========
        Chinese tree shrew  ===========
             Big brown bat  ===========
             Domestic goat  -----------
B D                   Sheep  -----------
B D                     Cow  ===========
B D              Guinea pig  ===========
B D                 Gorilla  NNNNNNNNNNN
B D                 Opossum  ===========
  D        Peregrine falcon  ===========
  D            Saker falcon  ===========
  D             Rock pigeon  ===========
  D         Green seaturtle  ===========
  D          Painted turtle  ===========
B D               Tetraodon  -----------
B D             Stickleback  -----------
        Southern platyfish  -----------
       Pundamilia nyererei  -----------
               Zebra mbuna  -----------
     Burton's mouthbreeder  -----------
       Princess of Burundi  -----------
B D            Nile tilapia  -----------
B D      American alligator  ===========
B D     Crab-eating macaque  -----------
B D         Squirrel monkey  ===========
        Tibetan ground jay  ===========
          Tibetan antelope  -----------
B D                 Dolphin  -----------
          Brush-tailed rat  ===========
              Killer whale  -----------
B D          Naked mole-rat  ===========
                  Aardvark  -----------
B D                 Megabat  -----------
B D                     Pig  ===========
      David's myotis (bat)  ===========
              Weddell seal  -----------
B D                   Panda  ===========
B D                 Ferret   ===========
B D                  Baboon  ===========
            Pacific walrus  -----------
                Chinchilla  ===========
          Black flying-fox  -----------
B D                     Dog  ===========
B D                     Cat  -----------
            Bactrian camel  -----------
B D                  Alpaca  -----------
B D                 Manatee  -----------
B D                Elephant  -----------
B D        White rhinoceros  -----------
B D                   Horse  -----------
B D                Bushbaby  ===========
B D                Marmoset  ===========
B D            Green monkey  -----------
B D                  Rhesus  -----------
B D                  Gibbon  NNNNNNNNNNN

Alignment block 6 of 580 in window, 47759827 - 47759827, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  g
B D                Squirrel  a
B D                  Alpaca  g
B D                     Dog  g
               Weddell seal  g
            Star-nosed mole  g
                   Aardvark  a
B D               Armadillo  a
B D                  Medaka  -
    Lesser Egyptian jerboa  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  -
B D                   Sheep  -
B D                     Cow  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  -
B D                 Dolphin  -
          Brush-tailed rat  =
              Killer whale  -
B D          Naked mole-rat  =
B D                 Megabat  -
B D                     Pig  =
      David's myotis (bat)  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  -
B D                     Cat  -
            Bactrian camel  -
B D                 Manatee  -
B D                Elephant  -
B D        White rhinoceros  -
B D                   Horse  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N

Alignment block 7 of 580 in window, 47759828 - 47759828, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D               Orangutan  a
B D                Squirrel  a
B D                  Alpaca  g
B D        White rhinoceros  a
B D                     Dog  a
               Weddell seal  g
            Star-nosed mole  a
                   Aardvark  a
B D               Armadillo  a
B D                  Medaka  -
    Lesser Egyptian jerboa  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  -
B D                   Sheep  -
B D                     Cow  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  -
B D                 Dolphin  -
          Brush-tailed rat  =
              Killer whale  -
B D          Naked mole-rat  =
B D                 Megabat  -
B D                     Pig  =
      David's myotis (bat)  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  -
B D                     Cat  -
            Bactrian camel  -
B D                 Manatee  -
B D                Elephant  -
B D                   Horse  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N

Inserts between block 7 and 8 in window
           Star-nosed mole 1bp

Alignment block 8 of 580 in window, 47759829 - 47759829, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D               Orangutan  a
B D                Squirrel  g
B D                  Alpaca  a
             Bactrian camel  a
B D                     Cow  a
B D        White rhinoceros  a
B D                     Dog  a
               Weddell seal  a
                   Aardvark  a
B D               Armadillo  a
B D                  Medaka  -
    Lesser Egyptian jerboa  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  -
B D                   Sheep  -
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  -
B D                 Dolphin  -
          Brush-tailed rat  =
           Star-nosed mole  =
              Killer whale  -
B D          Naked mole-rat  =
B D                 Megabat  -
B D                     Pig  =
      David's myotis (bat)  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  -
B D                     Cat  -
B D                 Manatee  -
B D                Elephant  -
B D                   Horse  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N

Alignment block 9 of 580 in window, 47759830 - 47759830, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  g
B D                Squirrel  a
B D                  Alpaca  g
             Bactrian camel  g
B D                 Dolphin  g
               Killer whale  g
           Tibetan antelope  g
B D                     Cow  g
B D                   Sheep  g
              Domestic goat  g
B D                   Horse  g
B D        White rhinoceros  g
B D                     Cat  g
B D                     Dog  a
             Pacific walrus  g
               Weddell seal  c
           Black flying-fox  g
B D                 Megabat  g
            Star-nosed mole  g
                   Aardvark  t
B D               Armadillo  g
B D                  Medaka  -
    Lesser Egyptian jerboa  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Brush-tailed rat  =
B D          Naked mole-rat  =
B D                     Pig  =
      David's myotis (bat)  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
                Chinchilla  =
B D                 Manatee  -
B D                Elephant  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N

Alignment block 10 of 580 in window, 47759831 - 47759833, 3 bps 
B D                   Human  gga
B D                   Chimp  gga
B D               Orangutan  gga
     Lesser Egyptian jerboa  gga
B D                  Alpaca  gaa
             Bactrian camel  gaa
B D                 Dolphin  gga
               Killer whale  gga
           Tibetan antelope  gga
B D                     Cow  gga
B D                   Sheep  gga
              Domestic goat  gga
B D                   Horse  gga
B D        White rhinoceros  ggg
B D                     Cat  gga
B D                     Dog  gga
             Pacific walrus  gga
               Weddell seal  gga
           Black flying-fox  gga
B D                 Megabat  gga
            Star-nosed mole  aga
                   Aardvark  gga
B D               Armadillo  gag
B D                  Medaka  ---
B D                    Pika  ===
        Chinese tree shrew  ===
             Big brown bat  ===
B D              Guinea pig  ===
B D                 Gorilla  NNN
B D                 Opossum  ===
  D        Peregrine falcon  ===
  D            Saker falcon  ===
  D             Rock pigeon  ===
  D         Green seaturtle  ===
  D          Painted turtle  ===
B D               Tetraodon  ---
B D             Stickleback  ---
        Southern platyfish  ---
       Pundamilia nyererei  ---
               Zebra mbuna  ---
     Burton's mouthbreeder  ---
       Princess of Burundi  ---
B D            Nile tilapia  ---
B D      American alligator  ===
B D     Crab-eating macaque  ---
B D         Squirrel monkey  ===
        Tibetan ground jay  ===
          Brush-tailed rat  ===
B D          Naked mole-rat  ===
B D                     Pig  ===
      David's myotis (bat)  ===
B D                   Panda  ===
B D                 Ferret   ===
B D                  Baboon  ===
                Chinchilla  ===
B D                 Manatee  ---
B D                Elephant  ---
B D                Squirrel  ---
B D                Bushbaby  ===
B D                Marmoset  ===
B D            Green monkey  ---
B D                  Rhesus  ---
B D                  Gibbon  NNN

Inserts between block 10 and 11 in window
                  Aardvark 8bp
B D              Armadillo 7bp

Alignment block 11 of 580 in window, 47759834 - 47759834, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  g
     Lesser Egyptian jerboa  g
B D                  Alpaca  g
             Bactrian camel  g
B D                 Dolphin  g
               Killer whale  g
           Tibetan antelope  g
B D                     Cow  g
B D                   Sheep  g
              Domestic goat  g
B D                   Horse  g
B D        White rhinoceros  g
B D                     Cat  g
B D                     Dog  g
             Pacific walrus  g
               Weddell seal  g
           Black flying-fox  g
B D                 Megabat  g
            Star-nosed mole  g
B D                 Manatee  g
                   Aardvark  g
B D               Armadillo  g
B D                  Medaka  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Brush-tailed rat  =
B D          Naked mole-rat  =
B D                     Pig  =
      David's myotis (bat)  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
                Chinchilla  =
B D                Elephant  -
B D                Squirrel  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  N

Alignment block 12 of 580 in window, 47759835 - 47759840, 6 bps 
B D                   Human  agac-tt
B D                   Chimp  agac-tt
B D               Orangutan  agac-tt
     Lesser Egyptian jerboa  atga-cc
B D                  Alpaca  agag-ta
             Bactrian camel  agag-ta
B D                 Dolphin  agac-ta
               Killer whale  agac-ta
           Tibetan antelope  agac-ta
B D                     Cow  agac-ta
B D                   Sheep  agac-ta
              Domestic goat  agac-ta
B D                   Horse  agac-ta
B D        White rhinoceros  aggc-ta
B D                     Cat  agag-ta
B D                     Dog  agat-ta
             Pacific walrus  agac-ta
               Weddell seal  agac-ta
           Black flying-fox  agac-ta
B D                 Megabat  agac-ta
            Star-nosed mole  gaga-ga
B D                Elephant  agac-ta
B D                 Manatee  agac-ta
                   Aardvark  agac-ta
B D               Armadillo  agacttg
B D                  Medaka  -------
B D                    Pika  =======
        Chinese tree shrew  =======
             Big brown bat  =======
B D              Guinea pig  =======
B D                 Gorilla  NNNNNNN
B D                 Opossum  =======
  D        Peregrine falcon  =======
  D            Saker falcon  =======
  D             Rock pigeon  =======
  D         Green seaturtle  =======
  D          Painted turtle  =======
B D               Tetraodon  -------
B D             Stickleback  -------
        Southern platyfish  -------
       Pundamilia nyererei  -------
               Zebra mbuna  -------
     Burton's mouthbreeder  -------
       Princess of Burundi  -------
B D            Nile tilapia  -------
B D      American alligator  =======
B D     Crab-eating macaque  -------
B D         Squirrel monkey  =======
        Tibetan ground jay  =======
          Brush-tailed rat  =======
B D          Naked mole-rat  =======
B D                     Pig  =======
      David's myotis (bat)  =======
B D                   Panda  =======
B D                 Ferret   =======
B D                  Baboon  =======
                Chinchilla  =======
B D                Squirrel  -------
B D                Bushbaby  =======
B D                Marmoset  =======
B D            Green monkey  -------
B D                  Rhesus  -------
B D                  Gibbon  NNNNNNN

Inserts between block 12 and 13 in window
    Lesser Egyptian jerboa 1bp

Alignment block 13 of 580 in window, 47759841 - 47759852, 12 bps 
B D                   Human  acgtcagaactt
B D                   Chimp  acgtcagaactt
B D               Orangutan  acatcagaactt
B D                Bushbaby  acgtcagtgctt
     Lesser Egyptian jerboa  gcgttcacatgc
B D                  Alpaca  atgtcagagcct
             Bactrian camel  atgtcagagcct
B D                 Dolphin  acgtcagagcct
               Killer whale  acgtcagagcct
           Tibetan antelope  acgtcagagcct
B D                     Cow  acgtcagagcct
B D                   Sheep  acgtcagagcct
              Domestic goat  acgtcagagcct
B D                   Horse  acgtcag-----
B D        White rhinoceros  acgtcagagcct
B D                     Cat  atggcagggtcc
B D                     Dog  atgtcaggaccc
             Pacific walrus  atgtcagggccc
               Weddell seal  atgtcagggccc
           Black flying-fox  acgtcagagcct
B D                 Megabat  acgtcagagcct
            Star-nosed mole  acgtcagagttt
B D                Elephant  acgtcagaggct
B D                 Manatee  atgtcagagact
                   Aardvark  aggtcagagtct
B D               Armadillo  acgccagagcct
B D                  Medaka  ------------
B D                    Pika  ============
        Chinese tree shrew  ============
             Big brown bat  ============
B D              Guinea pig  ============
B D                 Gorilla  NNNNNNNNNNNN
B D                 Opossum  ============
  D        Peregrine falcon  ============
  D            Saker falcon  ============
  D             Rock pigeon  ============
  D         Green seaturtle  ============
  D          Painted turtle  ============
B D               Tetraodon  ------------
B D             Stickleback  ------------
        Southern platyfish  ------------
       Pundamilia nyererei  ------------
               Zebra mbuna  ------------
     Burton's mouthbreeder  ------------
       Princess of Burundi  ------------
B D            Nile tilapia  ------------
B D      American alligator  ============
B D     Crab-eating macaque  ------------
B D         Squirrel monkey  ============
        Tibetan ground jay  ============
          Brush-tailed rat  ============
B D          Naked mole-rat  ============
B D                     Pig  ============
      David's myotis (bat)  ============
B D                   Panda  ============
B D                 Ferret   ============
B D                  Baboon  ============
                Chinchilla  ============
B D                Squirrel  ------------
B D                Marmoset  ============
B D            Green monkey  ------------
B D                  Rhesus  ------------
B D                  Gibbon  NNNNNNNNNNNN

Inserts between block 13 and 14 in window
B D       White rhinoceros 1bp
B D                    Cat 5bp
B D                    Dog 5bp
            Pacific walrus 4bp
              Weddell seal 6bp

Alignment block 14 of 580 in window, 47759853 - 47759932, 80 bps 
B D                   Human  ccc-acct--ccc---ca-ccacatg-ccacagaa---c----------aaggctttaaggag--ctatt
B D                   Chimp  ccc-acct--ccc---ca-ccacatg-ccacagaa---c----------aaggctttaaggag--ctatt
B D               Orangutan  ccc-acct--ccc---ca-ccatatg-ccatagaa---c----------aaggctttaaggag--ctatt
B D                Bushbaby  c---------ccc---cg-ccatatc-ccgtagaa---c----------atgacttttatgagaactatt
B D                Squirrel  ----------------ta-ttgtgtc--------------------------------------------
     Lesser Egyptian jerboa  ccc-tccc--cacacaca-tggtgtctctgcacag---t----------gctactctagggag--ctatt
B D                  Alpaca  -tc-cctc--cca---cc-ccctgta-ctctaaaacata----------atgactttaaggaa--ctgtt
             Bactrian camel  -tc-cctc--cca---cc-ccctata-ctctaaaacttc----------atgactttaaggaa--ctgtt
B D                 Dolphin  -cctcctt--ccc---cc-c--------------acatc----------acaa-tttaaggaa--ctgtt
               Killer whale  -cctcctt--ccc---cc-c--------------acatc----------acaa-tttaaggaa--ctgtt
           Tibetan antelope  -cc-cctt--ccc---cc-c--------------acatc----------atga-tttaagg------gtt
B D                     Cow  -cc-cctt--ccc---ct-g--------------acatc----------acga-tttaagg------gtt
B D                   Sheep  -cc-cctt--ccc---cc-c--------------acatc----------atga-tttaagg------gtt
              Domestic goat  -cc-cctt--ccc---cc-c--------------acatc----------atga-tttaagg------gtt
B D                   Horse  -cc-cttt--ccc---ccaccacatc-ccgtgaaacatc----------atgacttgaaggaa--ctgct
B D        White rhinoceros  -cc-cctt--ccc---ccaccacatc-ccgtaaaa---c----------gtgactttaaggaa--ctgtt
B D                     Cat  -cc-cact--ccc---tc-ccatatc-cggtcaaacatc----------acagctttaaggat--ctgct
B D                     Dog  -cc-cact--tcc---tc-ccacatc-ctggaaaacattgggactttaaggggctttaaggaa--ctgtt
B D                   Panda  -cc-ccct--tcc---tc-ccgcatc-ccgtgaaacatc----------acggctttaaggaa--ctgtc
             Pacific walrus  -cc-cact--t--------ccacatc-ccataaaatatc----------agggctttgaggaa--ctgtt
               Weddell seal  -cc-cact--tcc---tc-ccacatc-ccataaaatatc----------agggctttaaggaa--ctgtt
           Black flying-fox  -----------cc---cc-tcacgat-tcataaaacatc----------atgactttaaggaa---tgta
B D                 Megabat  -----------cc---cc-tcacgat-tcataaaacatc----------atgactttaaggaa---tgta
            Star-nosed mole  -cc-cccg--tgg---cc-ttacaac-ccataaaa---c----------atgactttaaggaa--ctgtt
B D                Elephant  cct-tctt--ctc---cg-ctatatg-ccctagaacact----------gcagcttgaaggaa--ctatt
B D                 Manatee  cct-cctt--ctt---ca-ccatatt-ccctagaacatc----------acagcttgaaggaa--ctatt
                   Aardvark  cac-cctttcccc---ca-ccatatt-ccctagaacact----------acagcttgaaggaa--cgatt
B D               Armadillo  cct-tc----ccc---ta-ccacatc-ccctagaatatc----------ccagcttgaaggca------t
B D                  Medaka  ----------------------------------------------------------------------
B D                    Pika  ======================================================================
        Chinese tree shrew  ======================================================================
             Big brown bat  ======================================================================
B D              Guinea pig  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
  D             Rock pigeon  ======================================================================
  D         Green seaturtle  ======================================================================
  D          Painted turtle  ======================================================================
B D               Tetraodon  ----------------------------------------------------------------------
B D             Stickleback  ----------------------------------------------------------------------
        Southern platyfish  ----------------------------------------------------------------------
       Pundamilia nyererei  ----------------------------------------------------------------------
               Zebra mbuna  ----------------------------------------------------------------------
     Burton's mouthbreeder  ----------------------------------------------------------------------
       Princess of Burundi  ----------------------------------------------------------------------
B D            Nile tilapia  ----------------------------------------------------------------------
B D      American alligator  ======================================================================
B D     Crab-eating macaque  ----------------------------------------------------------------------
B D         Squirrel monkey  ======================================================================
        Tibetan ground jay  ======================================================================
          Brush-tailed rat  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                     Pig  ======================================================================
      David's myotis (bat)  ======================================================================
B D                 Ferret   ======================================================================
B D                  Baboon  ======================================================================
                Chinchilla  ======================================================================
B D                Marmoset  ======================================================================
B D            Green monkey  ----------------------------------------------------------------------
B D                  Rhesus  ----------------------------------------------------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                      Human  tctgctgttc--ttccccctccca----tattaaataa---a
                      Chimp  tctgctgttc--ttccccctccca----tattaaataa---a
                  Orangutan  tctgctgttc--ttccccctcccg----tattaaataa---a
                   Bushbaby  ttggctgttctatcccctctccca----tcttaaataa---a
                   Squirrel  -------------catctatacct----ttaaaaaaaatata
     Lesser Egyptian jerboa  taggcaggct--tcccctttccca----tcttaaattagaga
                     Alpaca  cctgcagttcctctccctctcctg----tcctaaaaat-aaa
             Bactrian camel  cctgcagttcctccccctctcctg----tcctaaaaat-aaa
                    Dolphin  cctgctgttcctccccctctccca----tcttaa-------a
               Killer whale  cctgctgttcctccccctctccca----tcttaa-------a
           Tibetan antelope  tctgctgttcctccccttctgcca----tcttaaaaat-aga
                        Cow  tctgctgttcctccccttctgcca----tcttaaaaat-aga
                      Sheep  tctgctgttcctccccttctgcca----tcttaaaagt-aga
              Domestic goat  tctgctgttcctccccttctgcca----tcttaaaaat---a
                      Horse  cct-----------tcccctctca----tcttagaaat---a
           White rhinoceros  cct-----------tcccctctc---------aaaaat---a
                        Cat  cctgccccgcc---ccctctccca----tctt---------a
                        Dog  -ctgctgttgc---cgccctaccctccaccataaaagt-a-a
                      Panda  cctgctgtcgct--ccccctcccc----tcgtaaaagt---a
             Pacific walrus  cctgctcttgc---cgcccccccc----ccataaaaat---a
               Weddell seal  cctgctcttgc-----cccccccc----ccctaaaagt---a
           Black flying-fox  cct-----------ctctctaccg----tcttaaaaaa---a
                    Megabat  cct-----------ctctctaccg----tcttaaaaaa---a
            Star-nosed mole  cctgctgaca----ctctgtccca----acgtaaa-------
                   Elephant  tctactgtacctcccgctctccca----tctcaaataa---a
                    Manatee  tctgctgttcctctccctctccca----tctcaaataa---a
                   Aardvark  tctgctgtcccttcccctctccta----tcacaaataa---a
                  Armadillo  actgctgttcctccccctccccta----tcttaaaata---g
                     Medaka  ------------------------------------------
                       Pika  ==========================================
         Chinese tree shrew  ==========================================
              Big brown bat  ==========================================
                 Guinea pig  ==========================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Opossum  ==========================================
           Peregrine falcon  ==========================================
               Saker falcon  ==========================================
                Rock pigeon  ==========================================
            Green seaturtle  ==========================================
             Painted turtle  ==========================================
                  Tetraodon  ------------------------------------------
                Stickleback  ------------------------------------------
         Southern platyfish  ------------------------------------------
        Pundamilia nyererei  ------------------------------------------
                Zebra mbuna  ------------------------------------------
      Burton's mouthbreeder  ------------------------------------------
        Princess of Burundi  ------------------------------------------
               Nile tilapia  ------------------------------------------
         American alligator  ==========================================
        Crab-eating macaque  ------------------------------------------
            Squirrel monkey  ==========================================
         Tibetan ground jay  ==========================================
           Brush-tailed rat  ==========================================
             Naked mole-rat  ==========================================
                        Pig  ==========================================
       David's myotis (bat)  ==========================================
                    Ferret   ==========================================
                     Baboon  ==========================================
                 Chinchilla  ==========================================
                   Marmoset  ==========================================
               Green monkey  ------------------------------------------
                     Rhesus  ------------------------------------------
                     Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 14 and 15 in window
B D                  Horse 2bp
B D       White rhinoceros 2bp
B D                    Cat 2bp
B D                    Dog 2bp
B D                  Panda 2bp
            Pacific walrus 2bp
              Weddell seal 2bp
          Black flying-fox 17bp

Alignment block 15 of 580 in window, 47759933 - 47759943, 11 bps 
B D                   Human  -a--a-----ggtgtgttc
B D                   Chimp  -a--a-----ggggtgttc
B D               Orangutan  -a--a-----gaggtgttc
B D                Bushbaby  -aata-----gaaatatcc
B D                Squirrel  -a--g-----aaaatgttt
     Lesser Egyptian jerboa  -a--a-----ggaatgttc
B D                  Alpaca  -a--a-----ggatggttg
             Bactrian camel  -a--a-----ggatggttg
B D                 Dolphin  -a--a-----ggactgttg
               Killer whale  -a--a-----ggactgttg
           Tibetan antelope  -a--a-----agagtgttg
B D                     Cow  -a--a-----agtgtgttg
B D                   Sheep  -g--a-----agagtgttg
              Domestic goat  -g--a-----agagtgttg
B D                   Horse  -a--a-----ggaacgttg
B D        White rhinoceros  -a--a-----agaatgttg
B D                     Cat  -a--a-----gggatgttg
B D                     Dog  -a--a-----ggaatgctg
B D                   Panda  -a--a-----ggaatgttg
             Pacific walrus  -a--a-----gaagtgttg
               Weddell seal  -a--a-----ggagtgttg
B D                 Megabat  ----------ggaaaataa
            Star-nosed mole  -a--t-----gagatgctg
B D                Elephant  aa--t-----ggaattttc
B D                 Manatee  aa--t-----ggaattttc
                   Aardvark  aa--taaaacagaattttc
B D               Armadillo  aa--a-----ggaatgttc
B D                  Medaka  -------------------
B D                    Pika  ===================
        Chinese tree shrew  ===================
             Big brown bat  ===================
B D              Guinea pig  ===================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNN
B D                 Opossum  ===================
  D        Peregrine falcon  ===================
  D            Saker falcon  ===================
  D             Rock pigeon  ===================
  D         Green seaturtle  ===================
  D          Painted turtle  ===================
B D               Tetraodon  -------------------
B D             Stickleback  -------------------
        Southern platyfish  -------------------
       Pundamilia nyererei  -------------------
               Zebra mbuna  -------------------
     Burton's mouthbreeder  -------------------
       Princess of Burundi  -------------------
B D            Nile tilapia  -------------------
B D      American alligator  ===================
B D     Crab-eating macaque  -------------------
B D         Squirrel monkey  ===================
        Tibetan ground jay  ===================
          Brush-tailed rat  ===================
B D          Naked mole-rat  ===================
B D                     Pig  ===================
      David's myotis (bat)  ===================
B D                 Ferret   ===================
B D                  Baboon  ===================
                Chinchilla  ===================
          Black flying-fox  ===================
B D                Marmoset  ===================
B D            Green monkey  -------------------
B D                  Rhesus  -------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNN

Alignment block 16 of 580 in window, 47759944 - 47759952, 9 bps 
B D                   Human  tgcaggtag
B D                   Chimp  tgcaggtag
B D               Orangutan  tgcagatag
B D                  Gibbon  tgcaggtag
B D                Bushbaby  tacagatag
B D                Squirrel  tacagataa
     Lesser Egyptian jerboa  ttcagat--
B D                  Alpaca  tacatataa
             Bactrian camel  tatatatgg
B D                 Dolphin  tacagacaa
               Killer whale  tacagacaa
           Tibetan antelope  tacagacaa
B D                     Cow  tacagac--
B D                   Sheep  tacagacaa
              Domestic goat  tacagacaa
B D                   Horse  tgcagacga
B D        White rhinoceros  tgcagacag
B D                     Cat  tacagacag
B D                     Dog  tagagagga
B D                   Panda  tgcagacag
             Pacific walrus  tgcagacag
               Weddell seal  tgcagacag
B D                 Megabat  caaa-----
            Star-nosed mole  tacagataa
B D                Elephant  aacaggcaa
B D                 Manatee  tacaggcca
                   Aardvark  tatgggcaa
B D               Armadillo  tgcaggcaa
B D                  Medaka  ---------
B D                    Pika  =========
        Chinese tree shrew  =========
             Big brown bat  =========
B D              Guinea pig  =========
B D                 Gorilla  NNNNNNNNN
B D                 Opossum  =========
  D        Peregrine falcon  =========
  D            Saker falcon  =========
  D             Rock pigeon  =========
  D         Green seaturtle  =========
  D          Painted turtle  =========
B D               Tetraodon  ---------
B D             Stickleback  ---------
        Southern platyfish  ---------
       Pundamilia nyererei  ---------
               Zebra mbuna  ---------
     Burton's mouthbreeder  ---------
       Princess of Burundi  ---------
B D            Nile tilapia  ---------
B D      American alligator  =========
B D     Crab-eating macaque  ---------
B D         Squirrel monkey  =========
        Tibetan ground jay  =========
          Brush-tailed rat  =========
B D          Naked mole-rat  =========
B D                     Pig  =========
      David's myotis (bat)  =========
B D                 Ferret   =========
B D                  Baboon  =========
                Chinchilla  =========
          Black flying-fox  =========
B D                Marmoset  =========
B D            Green monkey  ---------
B D                  Rhesus  ---------

Alignment block 17 of 580 in window, 47759953 - 47759971, 19 bps 
B D                   Human  gaaaacagc------------------------------------tgtgtgtgtg
B D                   Chimp  gaaaacagc------------------------------------tgtgtgtgtg
B D               Orangutan  gaaaacagc----------------------------------------tgtgtg
B D                  Gibbon  gaaaacagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
B D                Bushbaby  gaaaacagc------------------------------tctttatgtgtgtatg
B D                Squirrel  gaaaacagc------------------------------------tctgtgtttg
     Lesser Egyptian jerboa  ---aacagc------------------------------------tctgtatgtg
B D                  Alpaca  t-aaatggc------------------------------------tgtgtgtg-g
             Bactrian camel  t-gaatggc------------------------------------tgtgtgtg-g
B D                 Dolphin  gaacactgc--------------------------------agtgtgcgtgtgtg
               Killer whale  gaacactgc--------------------------------agtgtgcgtgtgtg
           Tibetan antelope  gaaaacaac------------------------------------tctgcgtgta
B D                     Cow  --aaacaac------------------------------------tctgtgtgta
B D                   Sheep  gaaagcaac------------------------------------tctgtgtgtg
              Domestic goat  gaaagcaag------------------------------------tctgcgtgtg
B D                   Horse  gaaagcagc------------------------------------tttgtgtgtg
B D        White rhinoceros  gaaaacagc------------------------------------tctgagtgcg
B D                     Cat  taaaatggc------------------------------------tctttgtgcc
B D                     Dog  gaaaatagc------------------------------------tctttgtgtg
B D                   Panda  gagaa--------------------------------------------tgtgca
             Pacific walrus  gagaatggc------------------------------------tctttgtgtg
               Weddell seal  gagaatggc------------------------------------tctttgtgcg
           Black flying-fox  aaaaatagc------------------------------------tctgtgtgtg
B D                 Megabat  aaaaatacc------------------------------------tctgtgtgtg
            Star-nosed mole  gggatccgc------------------------------------tttatgtgta
B D                Elephant  aaaaactgc------------------------------------tcgttatgtg
B D                 Manatee  gaaaactgc------------------------------------tctttatgtg
                   Aardvark  gaaaatggc------------------------------------tctgtgtgtg
B D               Armadillo  gaaaacagc------------------------------------tctttttggg
B D                  Medaka  -------------------------------------------------------
B D                    Pika  =======================================================
        Chinese tree shrew  =======================================================
             Big brown bat  =======================================================
B D              Guinea pig  =======================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  =======================================================
  D        Peregrine falcon  =======================================================
  D            Saker falcon  =======================================================
  D             Rock pigeon  =======================================================
  D         Green seaturtle  =======================================================
  D          Painted turtle  =======================================================
B D               Tetraodon  -------------------------------------------------------
B D             Stickleback  -------------------------------------------------------
        Southern platyfish  -------------------------------------------------------
       Pundamilia nyererei  -------------------------------------------------------
               Zebra mbuna  -------------------------------------------------------
     Burton's mouthbreeder  -------------------------------------------------------
       Princess of Burundi  -------------------------------------------------------
B D            Nile tilapia  -------------------------------------------------------
B D      American alligator  =======================================================
B D     Crab-eating macaque  -------------------------------------------------------
B D         Squirrel monkey  =======================================================
        Tibetan ground jay  =======================================================
          Brush-tailed rat  =======================================================
B D          Naked mole-rat  =======================================================
B D                     Pig  =======================================================
      David's myotis (bat)  =======================================================
B D                 Ferret   =======================================================
B D                  Baboon  =======================================================
                Chinchilla  =======================================================
B D                Marmoset  =======================================================
B D            Green monkey  -------------------------------------------------------
B D                  Rhesus  -------------------------------------------------------

Inserts between block 17 and 18 in window
          Black flying-fox 29bp
B D                Megabat 29bp

Alignment block 18 of 580 in window, 47759972 - 47759984, 13 bps 
B D                   Human  tgtgtt-------gggggcg
B D                   Chimp  tgtgtt-------gggggcg
B D               Orangutan  tgtgtt-------gggagtg
B D                  Gibbon  tgtgtt-------gggggcg
B D                Bushbaby  tgtttt-------gggggtg
B D                Squirrel  agtggg-------gtgggac
     Lesser Egyptian jerboa  cctggt-------gacgggc
B D                  Alpaca  taggga-------ggagggg
             Bactrian camel  taggga-------ggagggg
B D                 Dolphin  tatagg-------ggagggg
               Killer whale  tatagg-------ggagggg
           Tibetan antelope  tataca-------ggagggg
B D                     Cow  tataca-------ggagggg
B D                   Sheep  tataca-------ggagggg
              Domestic goat  tataca-------gcagggg
B D                   Horse  tgtgtg-------ggatgga
B D        White rhinoceros  tatatg-------ggaggga
B D                     Cat  tatgtg-------tgagggg
B D                     Dog  gatgtg-------tgaggag
B D                   Panda  gatggg-------gaggagg
             Pacific walrus  tatggg-------tgaggag
               Weddell seal  tatggg-------tgaggag
            Star-nosed mole  tctggg-------tggaggg
B D                Elephant  tgtgta--------------
B D                 Manatee  tgtgta--------------
                   Aardvark  tgtgtgtgtgtgt-------
B D               Armadillo  gcagga--------------
B D                  Medaka  --------------------
B D                    Pika  ====================
        Chinese tree shrew  ====================
             Big brown bat  ====================
B D              Guinea pig  ====================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ====================
  D        Peregrine falcon  ====================
  D            Saker falcon  ====================
  D             Rock pigeon  ====================
  D         Green seaturtle  ====================
  D          Painted turtle  ====================
B D               Tetraodon  --------------------
B D             Stickleback  --------------------
        Southern platyfish  --------------------
       Pundamilia nyererei  --------------------
               Zebra mbuna  --------------------
     Burton's mouthbreeder  --------------------
       Princess of Burundi  --------------------
B D            Nile tilapia  --------------------
B D      American alligator  ====================
B D     Crab-eating macaque  --------------------
B D         Squirrel monkey  ====================
        Tibetan ground jay  ====================
          Brush-tailed rat  ====================
B D          Naked mole-rat  ====================
B D                 Megabat  ====================
B D                     Pig  ====================
      David's myotis (bat)  ====================
B D                 Ferret   ====================
B D                  Baboon  ====================
                Chinchilla  ====================
          Black flying-fox  ====================
B D                Marmoset  ====================
B D            Green monkey  --------------------
B D                  Rhesus  --------------------

Inserts between block 18 and 19 in window
B D               Bushbaby 20bp
B D               Squirrel 1bp
    Lesser Egyptian jerboa 1bp

Alignment block 19 of 580 in window, 47759985 - 47759992, 8 bps 
B D                   Human  gcgggggg---
B D                   Chimp  gcgggggg---
B D               Orangutan  gtgggggg---
B D                  Gibbon  gcgggggg---
B D                Squirrel  ggtggcag---
     Lesser Egyptian jerboa  gggggtgg---
B D                  Alpaca  -----gag---
             Bactrian camel  -----gag---
B D                 Dolphin  -----gca---
               Killer whale  -----gca---
           Tibetan antelope  -----tca---
B D                     Cow  -----tca---
B D                   Sheep  -----tca---
              Domestic goat  -----tca---
B D                   Horse  -----ggg---
B D        White rhinoceros  -----gg----
B D                     Cat  -----gag---
B D                     Dog  -----ggc---
B D                   Panda  -----ggg---
             Pacific walrus  -----ggg---
               Weddell seal  -----ggg---
            Star-nosed mole  -----cca---
B D                Elephant  -----gtgggg
B D                 Manatee  -----gcgggg
                   Aardvark  ---tttgggag
B D               Armadillo  -----gggagg
B D                  Medaka  -----------
B D                    Pika  ===========
        Chinese tree shrew  ===========
             Big brown bat  ===========
B D              Guinea pig  ===========
B D                 Gorilla  NNNNNNNNNNN
B D                 Opossum  ===========
  D        Peregrine falcon  ===========
  D            Saker falcon  ===========
  D             Rock pigeon  ===========
  D         Green seaturtle  ===========
  D          Painted turtle  ===========
B D               Tetraodon  -----------
B D             Stickleback  -----------
        Southern platyfish  -----------
       Pundamilia nyererei  -----------
               Zebra mbuna  -----------
     Burton's mouthbreeder  -----------
       Princess of Burundi  -----------
B D            Nile tilapia  -----------
B D      American alligator  ===========
B D     Crab-eating macaque  -----------
B D         Squirrel monkey  ===========
        Tibetan ground jay  ===========
          Brush-tailed rat  ===========
B D          Naked mole-rat  ===========
B D                 Megabat  ===========
B D                     Pig  ===========
      David's myotis (bat)  ===========
B D                 Ferret   ===========
B D                  Baboon  ===========
                Chinchilla  ===========
          Black flying-fox  ===========
B D                Bushbaby  ===========
B D                Marmoset  ===========
B D            Green monkey  -----------
B D                  Rhesus  -----------

Inserts between block 19 and 20 in window
B D                 Alpaca 2bp
            Bactrian camel 2bp
B D                Dolphin 4bp
              Killer whale 4bp
          Tibetan antelope 5bp
B D                    Cow 4bp
B D                  Sheep 5bp
             Domestic goat 5bp
B D                  Horse 4bp
B D                    Cat 44bp
B D                    Dog 2bp
B D                  Panda 2bp
            Pacific walrus 2bp
              Weddell seal 2bp
           Star-nosed mole 54bp

Alignment block 20 of 580 in window, 47759993 - 47759994, 2 bps 
B D                   Human  tg
B D                   Chimp  tg
B D               Orangutan  tc
B D                  Gibbon  tg
B D                Squirrel  gg
     Lesser Egyptian jerboa  gg
B D                Elephant  ag
B D                 Manatee  ag
                   Aardvark  aa
B D               Armadillo  tg
B D                  Medaka  --
B D                    Pika  ==
        Chinese tree shrew  ==
             Big brown bat  ==
             Domestic goat  ==
B D                   Sheep  ==
B D                     Cow  ==
B D              Guinea pig  ==
B D                 Gorilla  NN
B D                 Opossum  ==
  D        Peregrine falcon  ==
  D            Saker falcon  ==
  D             Rock pigeon  ==
  D         Green seaturtle  ==
  D          Painted turtle  ==
B D               Tetraodon  --
B D             Stickleback  --
        Southern platyfish  --
       Pundamilia nyererei  --
               Zebra mbuna  --
     Burton's mouthbreeder  --
       Princess of Burundi  --
B D            Nile tilapia  --
B D      American alligator  ==
B D     Crab-eating macaque  --
B D         Squirrel monkey  ==
        Tibetan ground jay  ==
          Tibetan antelope  ==
B D                 Dolphin  ==
          Brush-tailed rat  ==
           Star-nosed mole  ==
              Killer whale  ==
B D          Naked mole-rat  ==
B D                 Megabat  ==
B D                     Pig  ==
      David's myotis (bat)  ==
              Weddell seal  ==
B D                   Panda  ==
B D                 Ferret   ==
B D                  Baboon  ==
            Pacific walrus  ==
                Chinchilla  ==
          Black flying-fox  ==
B D                     Dog  ==
B D                     Cat  ==
            Bactrian camel  ==
B D                  Alpaca  ==
B D        White rhinoceros  --
B D                   Horse  ==
B D                Bushbaby  ==
B D                Marmoset  ==
B D            Green monkey  --
B D                  Rhesus  --

Inserts between block 20 and 21 in window
B D               Squirrel 2bp

Alignment block 21 of 580 in window, 47759995 - 47759995, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  a
B D                  Gibbon  g
B D                Squirrel  a
     Lesser Egyptian jerboa  a
           Tibetan antelope  g
B D                     Cow  g
B D                   Sheep  g
              Domestic goat  g
B D                   Horse  g
B D                     Dog  a
B D                   Panda  g
             Pacific walrus  g
               Weddell seal  g
B D                Elephant  g
B D                 Manatee  g
                   Aardvark  g
B D               Armadillo  a
B D                  Medaka  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
B D                 Dolphin  =
          Brush-tailed rat  =
           Star-nosed mole  =
              Killer whale  =
B D          Naked mole-rat  =
B D                 Megabat  =
B D                     Pig  =
      David's myotis (bat)  =
B D                 Ferret   =
B D                  Baboon  =
                Chinchilla  =
          Black flying-fox  =
B D                     Cat  =
            Bactrian camel  =
B D                  Alpaca  =
B D        White rhinoceros  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -

Inserts between block 21 and 22 in window
          Tibetan antelope 9bp
B D                    Cow 5bp
B D                  Sheep 5bp
             Domestic goat 5bp
B D                    Dog 10bp
B D                  Panda 92bp

Alignment block 22 of 580 in window, 47759996 - 47759996, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D               Orangutan  a
B D                  Gibbon  a
B D                Squirrel  g
     Lesser Egyptian jerboa  g
B D                  Alpaca  a
             Bactrian camel  a
B D                 Dolphin  a
               Killer whale  a
B D                   Sheep  g
              Domestic goat  g
B D                Elephant  a
B D                 Manatee  a
                   Aardvark  a
B D               Armadillo  a
B D                  Medaka  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
B D                     Cow  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  =
          Brush-tailed rat  =
           Star-nosed mole  =
B D          Naked mole-rat  =
B D                 Megabat  =
B D                     Pig  =
      David's myotis (bat)  =
              Weddell seal  -
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  =
B D                     Dog  =
B D                     Cat  =
B D        White rhinoceros  -
B D                   Horse  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -

Inserts between block 22 and 23 in window
B D              Armadillo 133bp

Alignment block 23 of 580 in window, 47759997 - 47759997, 1 bps 
B D                   Human  -t
B D                   Chimp  -t
B D               Orangutan  -t
B D                  Gibbon  -t
B D                Squirrel  -t
     Lesser Egyptian jerboa  -t
B D                 Dolphin  -t
               Killer whale  -t
B D                   Sheep  -t
              Domestic goat  -t
B D                Elephant  g-
B D                 Manatee  g-
                   Aardvark  c-
B D                  Medaka  --
B D                    Pika  ==
        Chinese tree shrew  ==
             Big brown bat  ==
B D                     Cow  ==
B D              Guinea pig  ==
B D                 Gorilla  NN
B D                 Opossum  ==
  D        Peregrine falcon  ==
  D            Saker falcon  ==
  D             Rock pigeon  ==
  D         Green seaturtle  ==
  D          Painted turtle  ==
B D               Tetraodon  --
B D             Stickleback  --
        Southern platyfish  --
       Pundamilia nyererei  --
               Zebra mbuna  --
     Burton's mouthbreeder  --
       Princess of Burundi  --
B D            Nile tilapia  --
B D      American alligator  ==
B D     Crab-eating macaque  --
B D         Squirrel monkey  ==
        Tibetan ground jay  ==
          Tibetan antelope  ==
          Brush-tailed rat  ==
           Star-nosed mole  ==
B D          Naked mole-rat  ==
B D                 Megabat  ==
B D                     Pig  ==
      David's myotis (bat)  ==
              Weddell seal  --
B D                   Panda  ==
B D                 Ferret   ==
B D                  Baboon  ==
            Pacific walrus  --
                Chinchilla  ==
          Black flying-fox  ==
B D                     Dog  ==
B D                     Cat  ==
            Bactrian camel  --
B D                  Alpaca  --
B D               Armadillo  ==
B D        White rhinoceros  --
B D                   Horse  --
B D                Bushbaby  ==
B D                Marmoset  ==
B D            Green monkey  --
B D                  Rhesus  --

Inserts between block 23 and 24 in window
B D                  Sheep 4bp
             Domestic goat 2bp

Alignment block 24 of 580 in window, 47759998 - 47759998, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  g
B D                  Gibbon  g
B D                Squirrel  g
     Lesser Egyptian jerboa  g
B D                 Dolphin  g
               Killer whale  g
B D                     Cow  g
B D                   Sheep  g
B D                Elephant  a
B D                 Manatee  a
                   Aardvark  a
B D                  Medaka  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  =
          Brush-tailed rat  =
           Star-nosed mole  =
B D          Naked mole-rat  =
B D                 Megabat  =
B D                     Pig  =
      David's myotis (bat)  =
              Weddell seal  -
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  =
B D                     Dog  =
B D                     Cat  =
            Bactrian camel  -
B D                  Alpaca  -
B D               Armadillo  =
B D        White rhinoceros  -
B D                   Horse  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -

Inserts between block 24 and 25 in window
B D                Dolphin 52bp

Alignment block 25 of 580 in window, 47759999 - 47759999, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D               Orangutan  t
B D                  Gibbon  t
     Lesser Egyptian jerboa  c
B D                     Cow  t
B D                   Sheep  t
B D                Elephant  c
B D                 Manatee  c
                   Aardvark  c
B D                  Medaka  -
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  =
B D                 Dolphin  =
          Brush-tailed rat  =
           Star-nosed mole  =
              Killer whale  -
B D          Naked mole-rat  =
B D                 Megabat  =
B D                     Pig  =
      David's myotis (bat)  =
              Weddell seal  -
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  -
                Chinchilla  =
          Black flying-fox  =
B D                     Dog  =
B D                     Cat  =
            Bactrian camel  -
B D                  Alpaca  -
B D               Armadillo  =
B D        White rhinoceros  -
B D                   Horse  -
B D                Squirrel  -
B D                Bushbaby  =
B D                Marmoset  =
B D            Green monkey  -
B D                  Rhesus  -

Inserts between block 25 and 26 in window
B D                    Cow 2bp

Alignment block 26 of 580 in window, 47760000 - 47760004, 5 bps 
B D                   Human  gtgga
B D                   Chimp  gtgga
B D               Orangutan  gtgga
B D                  Gibbon  gtgga
     Lesser Egyptian jerboa  ctgcc
B D                   Horse  -agga
B D        White rhinoceros  --gaa
B D                     Dog  --agt
             Pacific walrus  --ggg
               Weddell seal  --ggg
B D                Elephant  atgga
B D                 Manatee  atgga
                   Aardvark  atgaa
B D                  Medaka  -----
B D                    Pika  =====
        Chinese tree shrew  =====
             Big brown bat  =====
             Domestic goat  =====
B D                   Sheep  -----
B D                     Cow  =====
B D              Guinea pig  =====
B D                 Gorilla  NNNNN
B D                 Opossum  =====
  D        Peregrine falcon  =====
  D            Saker falcon  =====
  D             Rock pigeon  =====
  D         Green seaturtle  =====
  D          Painted turtle  =====
B D               Tetraodon  -----
B D             Stickleback  -----
        Southern platyfish  -----
       Pundamilia nyererei  -----
               Zebra mbuna  -----
     Burton's mouthbreeder  -----
       Princess of Burundi  -----
B D            Nile tilapia  -----
B D      American alligator  =====
B D     Crab-eating macaque  -----
B D         Squirrel monkey  =====
        Tibetan ground jay  =====
          Tibetan antelope  =====
B D                 Dolphin  =====
          Brush-tailed rat  =====
           Star-nosed mole  =====
              Killer whale  -----
B D          Naked mole-rat  =====
B D                 Megabat  =====
B D                     Pig  =====
      David's myotis (bat)  =====
B D                   Panda  =====
B D                 Ferret   =====
B D                  Baboon  =====
                Chinchilla  =====
          Black flying-fox  =====
B D                     Cat  =====
            Bactrian camel  -----
B D                  Alpaca  -----
B D               Armadillo  =====
B D                Squirrel  -----
B D                Bushbaby  =====
B D                Marmoset  =====
B D            Green monkey  -----
B D                  Rhesus  -----

Inserts between block 26 and 27 in window
B D                    Dog 44bp
            Pacific walrus 6bp
              Weddell seal 4bp

Alignment block 27 of 580 in window, 47760005 - 47760012, 8 bps 
B D                   Human  cgatagag
B D                   Chimp  cgatagag
B D               Orangutan  cgacagag
B D                  Gibbon  caatagag
     Lesser Egyptian jerboa  catgacca
B D                  Alpaca  ---gag--
             Bactrian camel  ---gag--
B D                   Sheep  -----g--
B D                   Horse  ---cag--
B D        White rhinoceros  ---cag--
             Pacific walrus  ---cag--
B D                  Medaka  --------
B D                    Pika  ========
        Chinese tree shrew  ========
             Big brown bat  ========
             Domestic goat  ========
B D                     Cow  ========
B D              Guinea pig  ========
B D                 Gorilla  NNNNNNNN
B D                 Opossum  ========
  D        Peregrine falcon  ========
  D            Saker falcon  ========
  D             Rock pigeon  ========
  D         Green seaturtle  ========
  D          Painted turtle  ========
B D               Tetraodon  --------
B D             Stickleback  --------
        Southern platyfish  --------
       Pundamilia nyererei  --------
               Zebra mbuna  --------
     Burton's mouthbreeder  --------
       Princess of Burundi  --------
B D            Nile tilapia  --------
B D      American alligator  ========
B D     Crab-eating macaque  --------
B D         Squirrel monkey  ========
        Tibetan ground jay  ========
          Tibetan antelope  ========
B D                 Dolphin  ========
          Brush-tailed rat  ========
           Star-nosed mole  ========
              Killer whale  --------
B D          Naked mole-rat  ========
                  Aardvark  --------
B D                 Megabat  ========
B D                     Pig  ========
      David's myotis (bat)  ========
              Weddell seal  ========
B D                   Panda  ========
B D                 Ferret   ========
B D                  Baboon  ========
                Chinchilla  ========
          Black flying-fox  ========
B D                     Dog  ========
B D                     Cat  ========
B D               Armadillo  ========
B D                 Manatee  --------
B D                Elephant  --------
B D                Squirrel  --------
B D                Bushbaby  ========
B D                Marmoset  ========
B D            Green monkey  --------
B D                  Rhesus  --------

Inserts between block 27 and 28 in window
B D                 Alpaca 4bp
            Bactrian camel 4bp
B D                  Sheep 4bp
B D                  Horse 4bp
B D       White rhinoceros 4bp
            Pacific walrus 909bp

Alignment block 28 of 580 in window, 47760013 - 47760026, 14 bps 
B D                   Human  ca-------------gta-gggagaggt
B D                   Chimp  ca-------------gta-gggagaggt
B D               Orangutan  ca-------------gta-gggagaggt
B D                  Gibbon  ca-------------gta-gggagaggt
B D                Squirrel  -------------------ggtggaagt
     Lesser Egyptian jerboa  ca-------------gtaaggcagatgt
B D                  Alpaca  ca-------------gta-agtcgaggt
             Bactrian camel  ca-------------gta-agtcgaggt
               Killer whale  ---------------gta-agttgaggt
B D                   Sheep  tgaaagccacgaggggtc-agaagaggg
B D                   Horse  ca-------------gca-gggtgaggg
B D        White rhinoceros  ca-------------gaa-ggttgaggt
               Weddell seal  ---------------gtc-agctgaggt
B D                Elephant  ca-------------gca-ggcaaaatt
B D                 Manatee  cg-------------gta-ggcagaagt
                   Aardvark  cc-------------ata-ggcagaagt
B D                  Medaka  ----------------------------
B D                    Pika  ============================
        Chinese tree shrew  ============================
             Big brown bat  ============================
             Domestic goat  ============================
B D                     Cow  ============================
B D              Guinea pig  ============================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ============================
  D        Peregrine falcon  ============================
  D            Saker falcon  ============================
  D             Rock pigeon  ============================
  D         Green seaturtle  ============================
  D          Painted turtle  ============================
B D               Tetraodon  ----------------------------
B D             Stickleback  ----------------------------
        Southern platyfish  ----------------------------
       Pundamilia nyererei  ----------------------------
               Zebra mbuna  ----------------------------
     Burton's mouthbreeder  ----------------------------
       Princess of Burundi  ----------------------------
B D            Nile tilapia  ----------------------------
B D      American alligator  ============================
B D     Crab-eating macaque  ----------------------------
B D         Squirrel monkey  ============================
        Tibetan ground jay  ============================
          Tibetan antelope  ============================
B D                 Dolphin  ============================
          Brush-tailed rat  ============================
           Star-nosed mole  ============================
B D          Naked mole-rat  ============================
B D                 Megabat  ============================
B D                     Pig  ============================
      David's myotis (bat)  ============================
B D                   Panda  ============================
B D                 Ferret   ============================
B D                  Baboon  ============================
            Pacific walrus  ============================
                Chinchilla  ============================
          Black flying-fox  ============================
B D                     Dog  ============================
B D                     Cat  ============================
B D               Armadillo  ============================
B D                Bushbaby  ============================
B D                Marmoset  ============================
B D            Green monkey  ----------------------------
B D                  Rhesus  ----------------------------

Alignment block 29 of 580 in window, 47760027 - 47760031, 5 bps 
B D                   Human  aaaaa-
B D                   Chimp  aaaaa-
B D               Orangutan  aaaaa-
B D                  Gibbon  aaaaa-
B D                Marmoset  agaaa-
B D                Squirrel  gacaa-
     Lesser Egyptian jerboa  agaaa-
B D                  Alpaca  gagga-
             Bactrian camel  gagga-
               Killer whale  gcaaa-
B D                   Sheep  tgagt-
B D                   Horse  gaaaa-
B D        White rhinoceros  gaaaa-
               Weddell seal  gagaa-
B D                Elephant  -aaaac
B D                 Manatee  -aaaat
                   Aardvark  -caaac
B D                  Medaka  ------
B D                    Pika  ======
        Chinese tree shrew  ======
             Big brown bat  ======
             Domestic goat  ======
B D                     Cow  ======
B D              Guinea pig  ======
B D                 Gorilla  NNNNNN
B D                 Opossum  ======
  D        Peregrine falcon  ======
  D            Saker falcon  ======
  D             Rock pigeon  ======
  D         Green seaturtle  ======
  D          Painted turtle  ======
B D               Tetraodon  ------
B D             Stickleback  ------
        Southern platyfish  ------
       Pundamilia nyererei  ------
               Zebra mbuna  ------
     Burton's mouthbreeder  ------
       Princess of Burundi  ------
B D            Nile tilapia  ------
B D      American alligator  ======
B D     Crab-eating macaque  ------
B D         Squirrel monkey  ======
        Tibetan ground jay  ======
          Tibetan antelope  ======
B D                 Dolphin  ======
          Brush-tailed rat  ======
           Star-nosed mole  ======
B D          Naked mole-rat  ======
B D                 Megabat  ======
B D                     Pig  ======
      David's myotis (bat)  ======
B D                   Panda  ======
B D                 Ferret   ======
B D                  Baboon  ======
            Pacific walrus  ======
                Chinchilla  ======
          Black flying-fox  ======
B D                     Dog  ======
B D                     Cat  ======
B D               Armadillo  ======
B D                Bushbaby  ======
B D            Green monkey  ------
B D                  Rhesus  ------

Inserts between block 29 and 30 in window
B D       White rhinoceros 33bp

Alignment block 30 of 580 in window, 47760032 - 47760033, 2 bps 
B D                   Human  tg-
B D                   Chimp  tg-
B D               Orangutan  tg-
B D                  Gibbon  t--
B D                Marmoset  tg-
B D                Squirrel  cg-
     Lesser Egyptian jerboa  tg-
B D                  Alpaca  tg-
             Bactrian camel  tg-
               Killer whale  tg-
B D                   Sheep  tg-
B D                   Horse  tc-
               Weddell seal  tg-
B D                Elephant  -gg
B D                 Manatee  -gg
                   Aardvark  -ag
B D                  Medaka  ---
B D                    Pika  ===
        Chinese tree shrew  ===
             Big brown bat  ===
             Domestic goat  ===
B D                     Cow  ===
B D              Guinea pig  ===
B D                 Gorilla  NNN
B D                 Opossum  ===
  D        Peregrine falcon  ===
  D            Saker falcon  ===
  D             Rock pigeon  ===
  D         Green seaturtle  ===
  D          Painted turtle  ===
B D               Tetraodon  ---
B D             Stickleback  ---
        Southern platyfish  ---
       Pundamilia nyererei  ---
               Zebra mbuna  ---
     Burton's mouthbreeder  ---
       Princess of Burundi  ---
B D            Nile tilapia  ---
B D      American alligator  ===
B D     Crab-eating macaque  ---
B D         Squirrel monkey  ===
        Tibetan ground jay  ===
          Tibetan antelope  ===
B D                 Dolphin  ===
          Brush-tailed rat  ===
           Star-nosed mole  ===
B D          Naked mole-rat  ===
B D                 Megabat  ===
B D                     Pig  ===
      David's myotis (bat)  ===
B D                   Panda  ===
B D                 Ferret   ===
B D                  Baboon  ===
            Pacific walrus  ===
                Chinchilla  ===
          Black flying-fox  ===
B D                     Dog  ===
B D                     Cat  ===
B D               Armadillo  ===
B D        White rhinoceros  ===
B D                Bushbaby  ===
B D            Green monkey  ---
B D                  Rhesus  ---

Inserts between block 30 and 31 in window
    Lesser Egyptian jerboa 1090bp
B D                 Alpaca 43bp
            Bactrian camel 43bp
              Killer whale 33bp

Alignment block 31 of 580 in window, 47760034 - 47760035, 2 bps 
B D                   Human  a--g
B D                   Chimp  a--g
B D               Orangutan  a--g
B D                Marmoset  gatg
B D                   Sheep  --aa
B D                   Horse  --gg
               Weddell seal  --ag
B D                Elephant  --cg
B D                 Manatee  --aa
                   Aardvark  --aa
B D                  Medaka  ----
    Lesser Egyptian jerboa  ====
B D                    Pika  ====
        Chinese tree shrew  ====
             Big brown bat  ====
             Domestic goat  ====
B D                     Cow  ====
B D              Guinea pig  ====
B D                 Gorilla  NNNN
B D                 Opossum  ====
  D        Peregrine falcon  ====
  D            Saker falcon  ====
  D             Rock pigeon  ====
  D         Green seaturtle  ====
  D          Painted turtle  ====
B D               Tetraodon  ----
B D             Stickleback  ----
        Southern platyfish  ----
       Pundamilia nyererei  ----
               Zebra mbuna  ----
     Burton's mouthbreeder  ----
       Princess of Burundi  ----
B D            Nile tilapia  ----
B D      American alligator  ====
B D     Crab-eating macaque  ----
B D         Squirrel monkey  ====
        Tibetan ground jay  ====
          Tibetan antelope  ====
B D                 Dolphin  ====
          Brush-tailed rat  ====
           Star-nosed mole  ====
              Killer whale  ====
B D          Naked mole-rat  ====
B D                 Megabat  ====
B D                     Pig  ====
      David's myotis (bat)  ====
B D                   Panda  ====
B D                 Ferret   ====
B D                  Baboon  ====
            Pacific walrus  ====
                Chinchilla  ====
          Black flying-fox  ====
B D                     Dog  ====
B D                     Cat  ====
            Bactrian camel  ====
B D                  Alpaca  ====
B D               Armadillo  ====
B D        White rhinoceros  ====
B D                Squirrel  ----
B D                Bushbaby  ====
B D            Green monkey  ----
B D                  Rhesus  ----
B D                  Gibbon  ----

Inserts between block 31 and 32 in window
              Weddell seal 65bp

Alignment block 32 of 580 in window, 47760036 - 47760036, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D               Orangutan  t
B D                Marmoset  g
B D                   Sheep  g
B D                   Horse  g
B D                Elephant  g
B D                 Manatee  g
                   Aardvark  a
B D                  Medaka  -
    Lesser Egyptian jerboa  =
B D                    Pika  =
        Chinese tree shrew  =
             Big brown bat  =
             Domestic goat  =
B D                     Cow  =
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D     Crab-eating macaque  -
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Tibetan antelope  =
B D                 Dolphin  =
          Brush-tailed rat  =
           Star-nosed mole  =
              Killer whale  =
B D          Naked mole-rat  =
B D                 Megabat  =
B D                     Pig  =
      David's myotis (bat)  =
              Weddell seal  =
B D                   Panda  =
B D                 Ferret   =
B D                  Baboon  =
            Pacific walrus  =
                Chinchilla  =
          Black flying-fox  =
B D                     Dog  =
B D                     Cat  =
            Bactrian camel  =
B D                  Alpaca  =
B D               Armadillo  =
B D        White rhinoceros  =
B D                Squirrel  -
B D                Bushbaby  =
B D            Green monkey  -
B D                  Rhesus  -
B D                  Gibbon  -

Inserts between block 32 and 33 in window
B D                  Horse 11bp

Alignment block 33 of 580 in window, 47760037 - 47760043, 7 bps 
B D                   Human  ccgggca
B D                   Chimp  ccgggca
B D               Orangutan  ctgggca
B D                  Gibbon  --gggcg
B D                Marmoset  ccaggcg
B D                Elephant  tcatcca
B D                 Manatee  tcatcca
                   Aardvark  ccaacca
B D                  Medaka  -------
    Lesser Egyptian jerboa  =======
B D                    Pika  =======
        Chinese tree shrew  =======
             Big brown bat  =======
             Domestic goat  =======
B D                   Sheep  -------
B D                     Cow  =======
B D              Guinea pig  =======
B D                 Gorilla  NNNNNNN
B D                 Opossum  =======
  D        Peregrine falcon  =======
  D            Saker falcon  =======
  D             Rock pigeon  =======
  D         Green seaturtle  =======
  D          Painted turtle  =======
B D               Tetraodon  -------
B D             Stickleback  -------
        Southern platyfish  -------
       Pundamilia nyererei  -------
               Zebra mbuna  -------
     Burton's mouthbreeder  -------
       Princess of Burundi  -------
B D            Nile tilapia  -------
B D      American alligator  =======
B D     Crab-eating macaque  -------
B D         Squirrel monkey  =======
        Tibetan ground jay  =======
          Tibetan antelope  =======
B D                 Dolphin  =======
          Brush-tailed rat  =======
           Star-nosed mole  =======
              Killer whale  =======
B D          Naked mole-rat  =======
B D                 Megabat  =======
B D                     Pig  =======
      David's myotis (bat)  =======
              Weddell seal  =======
B D                   Panda  =======
B D                 Ferret   =======
B D                  Baboon  =======
            Pacific walrus  =======
                Chinchilla  =======
          Black flying-fox  =======
B D                     Dog  =======
B D                     Cat  =======
            Bactrian camel  =======
B D                  Alpaca  =======
B D               Armadillo  =======
B D        White rhinoceros  =======
B D                   Horse  =======
B D                Squirrel  -------
B D                Bushbaby  =======
B D            Green monkey  -------
B D                  Rhesus  -------

Inserts between block 33 and 34 in window
B D                Manatee 1bp
                  Aardvark 32bp

Alignment block 34 of 580 in window, 47760044 - 47760060, 17 bps 
B D                   Human  ---------ta-gtggctc-acacttgt
B D                   Chimp  ---------ta-gtggctc-acacctgt
B D               Orangutan  ---------ca-gtggctcaacacctgt
B D                  Gibbon  ---------ta-gtggctc-atgcctgt
B D                Marmoset  ---------caggtggctc-atgcctgt
B D                Elephant  tgtctactaaa-gtgcttt-acgcctgt
B D                 Manatee  tgtctgccaaa-gtgcctt-aagcctgt
B D                  Medaka  ----------------------------
    Lesser Egyptian jerboa  ============================
B D                    Pika  ============================
        Chinese tree shrew  ============================
             Big brown bat  ============================
             Domestic goat  ============================
B D                   Sheep  ----------------------------
B D                     Cow  ============================
B D              Guinea pig  ============================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ============================
  D        Peregrine falcon  ============================
  D            Saker falcon  ============================
  D             Rock pigeon  ============================
  D         Green seaturtle  ============================
  D          Painted turtle  ============================
B D               Tetraodon  ----------------------------
B D             Stickleback  ----------------------------
        Southern platyfish  ----------------------------
       Pundamilia nyererei  ----------------------------
               Zebra mbuna  ----------------------------
     Burton's mouthbreeder  ----------------------------
       Princess of Burundi  ----------------------------
B D            Nile tilapia  ----------------------------
B D      American alligator  ============================
B D     Crab-eating macaque  ----------------------------
B D         Squirrel monkey  ============================
        Tibetan ground jay  ============================
          Tibetan antelope  ============================
B D                 Dolphin  ============================
          Brush-tailed rat  ============================
           Star-nosed mole  ============================
              Killer whale  ============================
B D          Naked mole-rat  ============================
                  Aardvark  ============================
B D                 Megabat  ============================
B D                     Pig  ============================
      David's myotis (bat)  ============================
              Weddell seal  ============================
B D                   Panda  ============================
B D                 Ferret   ============================
B D                  Baboon  ============================
            Pacific walrus  ============================
                Chinchilla  ============================
          Black flying-fox  ============================
B D                     Dog  ============================
B D                     Cat  ============================
            Bactrian camel  ============================
B D                  Alpaca  ============================
B D               Armadillo  ============================
B D        White rhinoceros  ============================
B D                   Horse  ============================
B D                Squirrel  ----------------------------
B D                Bushbaby  ============================
B D            Green monkey  ----------------------------
B D                  Rhesus  ----------------------------

Inserts between block 34 and 35 in window
B D               Elephant 161bp
B D                Manatee 11bp

Alignment block 35 of 580 in window, 47760061 - 47760145, 85 bps 
B D                   Human  aatcccag------cactttgggaggtggaggtgggtggatcacctgaggtcaggagttcgagaccagcc
B D                   Chimp  aatcccag------cactttgggaggtggaggtgggtggatcacctgaggtcaggagttcgagaccagcc
B D               Orangutan  aatcccag------cgctttgggaggtggaggtgggtagatcacctgaggtcaggagttcgagaccagcc
B D                  Gibbon  aatcccag------cactttgggaggtggaggtggatggatcacctgaggtcaggagttagagaccagcc
B D                Marmoset  aatcctag------cactttgggaggctgagggggacggatcatct---atcaagagttcggaaccaacc
B D                Squirrel  ------aa------agcttttggggccgagggt------------------------------actctcc
B D                 Manatee  gcccccagtaaatccactctagggagtgagtctgaaagaactggaggaagagaggag-------------
B D                  Medaka  ----------------------------------------------------------------------
    Lesser Egyptian jerboa  ======================================================================
B D                    Pika  ======================================================================
        Chinese tree shrew  ======================================================================
             Big brown bat  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ----------------------------------------------------------------------
B D                     Cow  ======================================================================
B D              Guinea pig  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
  D             Rock pigeon  ======================================================================
  D         Green seaturtle  ======================================================================
  D          Painted turtle  ======================================================================
B D               Tetraodon  ----------------------------------------------------------------------
B D             Stickleback  ----------------------------------------------------------------------
        Southern platyfish  ----------------------------------------------------------------------
       Pundamilia nyererei  ----------------------------------------------------------------------
               Zebra mbuna  ----------------------------------------------------------------------
     Burton's mouthbreeder  ----------------------------------------------------------------------
       Princess of Burundi  ----------------------------------------------------------------------
B D            Nile tilapia  ----------------------------------------------------------------------
B D      American alligator  ======================================================================
B D     Crab-eating macaque  ----------------------------------------------------------------------
B D         Squirrel monkey  ======================================================================
        Tibetan ground jay  ======================================================================
          Tibetan antelope  ======================================================================
B D                 Dolphin  ======================================================================
          Brush-tailed rat  ======================================================================
           Star-nosed mole  ======================================================================
              Killer whale  ======================================================================
B D          Naked mole-rat  ======================================================================
                  Aardvark  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
      David's myotis (bat)  ======================================================================
              Weddell seal  ======================================================================
B D                   Panda  ======================================================================
B D                 Ferret   ======================================================================
B D                  Baboon  ======================================================================
            Pacific walrus  ======================================================================
                Chinchilla  ======================================================================
          Black flying-fox  ======================================================================
B D                     Dog  ======================================================================
B D                     Cat  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
B D               Armadillo  ======================================================================
B D                Elephant  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
B D                Bushbaby  ======================================================================
B D            Green monkey  ----------------------------------------------------------------------
B D                  Rhesus  ----------------------------------------------------------------------

                      Human  tggccaacatggcgaaactcc
                      Chimp  tggccaacatggcgaaactcc
                  Orangutan  tgaccaacatggcgaaacccc
                     Gibbon  tggccaacatggcaaaacttc
                   Marmoset  tgaccaacatggagaaaccct
                   Squirrel  tggtcaa--------------
                    Manatee  -------------gaaactct
                     Medaka  ---------------------
     Lesser Egyptian jerboa  =====================
                       Pika  =====================
         Chinese tree shrew  =====================
              Big brown bat  =====================
              Domestic goat  =====================
                      Sheep  ---------------------
                        Cow  =====================
                 Guinea pig  =====================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNN
                    Opossum  =====================
           Peregrine falcon  =====================
               Saker falcon  =====================
                Rock pigeon  =====================
            Green seaturtle  =====================
             Painted turtle  =====================
                  Tetraodon  ---------------------
                Stickleback  ---------------------
         Southern platyfish  ---------------------
        Pundamilia nyererei  ---------------------
                Zebra mbuna  ---------------------
      Burton's mouthbreeder  ---------------------
        Princess of Burundi  ---------------------
               Nile tilapia  ---------------------
         American alligator  =====================
        Crab-eating macaque  ---------------------
            Squirrel monkey  =====================
         Tibetan ground jay  =====================
           Tibetan antelope  =====================
                    Dolphin  =====================
           Brush-tailed rat  =====================
            Star-nosed mole  =====================
               Killer whale  =====================
             Naked mole-rat  =====================
                   Aardvark  =====================
                    Megabat  =====================
                        Pig  =====================
       David's myotis (bat)  =====================
               Weddell seal  =====================
                      Panda  =====================
                    Ferret   =====================
                     Baboon  =====================
             Pacific walrus  =====================
                 Chinchilla  =====================
           Black flying-fox  =====================
                        Dog  =====================
                        Cat  =====================
             Bactrian camel  =====================
                     Alpaca  =====================
                  Armadillo  =====================
                   Elephant  =====================
           White rhinoceros  =====================
                      Horse  =====================
                   Bushbaby  =====================
               Green monkey  ---------------------
                     Rhesus  ---------------------

Inserts between block 35 and 36 in window
B D                Manatee 131bp

Alignment block 36 of 580 in window, 47760146 - 47760175, 30 bps 
B D                   Human  atctctcctaaaaaatataaaaattagctg
B D                   Chimp  agctctcctaaaaaatataaaaattagctg
B D               Orangutan  gtctctactaaaaaatacaaaaattagctg
B D                  Gibbon  atctctactaaaaattacaaaaattagctg
B D                Marmoset  gtctctactgaaaa-tac-aaaatcagccg
B D                Squirrel  -gccctcccca-------------------
B D                  Medaka  ------------------------------
    Lesser Egyptian jerboa  ==============================
B D                    Pika  ==============================
        Chinese tree shrew  ==============================
             Big brown bat  ==============================
             Domestic goat  ==============================
B D                   Sheep  ------------------------------
B D                     Cow  ==============================
B D              Guinea pig  ==============================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ==============================
  D        Peregrine falcon  ==============================
  D            Saker falcon  ==============================
  D             Rock pigeon  ==============================
  D         Green seaturtle  ==============================
  D          Painted turtle  ==============================
B D               Tetraodon  ------------------------------
B D             Stickleback  ------------------------------
        Southern platyfish  ------------------------------
       Pundamilia nyererei  ------------------------------
               Zebra mbuna  ------------------------------
     Burton's mouthbreeder  ------------------------------
       Princess of Burundi  ------------------------------
B D            Nile tilapia  ------------------------------
B D      American alligator  ==============================
B D     Crab-eating macaque  ------------------------------
B D         Squirrel monkey  ==============================
        Tibetan ground jay  ==============================
          Tibetan antelope  ==============================
B D                 Dolphin  ==============================
          Brush-tailed rat  ==============================
           Star-nosed mole  ==============================
              Killer whale  ==============================
B D          Naked mole-rat  ==============================
                  Aardvark  ==============================
B D                 Megabat  ==============================
B D                     Pig  ==============================
      David's myotis (bat)  ==============================
              Weddell seal  ==============================
B D                   Panda  ==============================
B D                 Ferret   ==============================
B D                  Baboon  ==============================
            Pacific walrus  ==============================
                Chinchilla  ==============================
          Black flying-fox  ==============================
B D                     Dog  ==============================
B D                     Cat  ==============================
            Bactrian camel  ==============================
B D                  Alpaca  ==============================
B D               Armadillo  ==============================
B D                 Manatee  ==============================
B D                Elephant  ==============================
B D        White rhinoceros  ==============================
B D                   Horse  ==============================
B D                Bushbaby  ==============================
B D            Green monkey  ------------------------------
B D                  Rhesus  ------------------------------

Alignment block 37 of 580 in window, 47760176 - 47760186, 11 bps 
B D                   Human  ggtatggtggc
B D                   Chimp  ggtatggtggc
B D               Orangutan  ggcgtggtggc
B D                  Gibbon  ggcgtggtggc
B D            Green monkey  ggtgtggtggg
B D                Marmoset  agtgtagtggt
B D                Squirrel  ------gcagc
B D                  Medaka  -----------
    Lesser Egyptian jerboa  ===========
B D                    Pika  ===========
        Chinese tree shrew  ===========
             Big brown bat  ===========
             Domestic goat  ===========
B D                   Sheep  -----------
B D                     Cow  ===========
B D              Guinea pig  ===========
B D                 Gorilla  NNNNNNNNNNN
B D                 Opossum  ===========
  D        Peregrine falcon  ===========
  D            Saker falcon  ===========
  D             Rock pigeon  ===========
  D         Green seaturtle  ===========
  D          Painted turtle  ===========
B D               Tetraodon  -----------
B D             Stickleback  -----------
        Southern platyfish  -----------
       Pundamilia nyererei  -----------
               Zebra mbuna  -----------
     Burton's mouthbreeder  -----------
       Princess of Burundi  -----------
B D            Nile tilapia  -----------
B D      American alligator  ===========
B D     Crab-eating macaque  -----------
B D         Squirrel monkey  ===========
        Tibetan ground jay  ===========
          Tibetan antelope  ===========
B D                 Dolphin  ===========
          Brush-tailed rat  ===========
           Star-nosed mole  ===========
              Killer whale  ===========
B D          Naked mole-rat  ===========
                  Aardvark  ===========
B D                 Megabat  ===========
B D                     Pig  ===========
      David's myotis (bat)  ===========
              Weddell seal  ===========
B D                   Panda  ===========
B D                 Ferret   ===========
B D                  Baboon  ===========
            Pacific walrus  ===========
                Chinchilla  ===========
          Black flying-fox  ===========
B D                     Dog  ===========
B D                     Cat  ===========
            Bactrian camel  ===========
B D                  Alpaca  ===========
B D               Armadillo  ===========
B D                 Manatee  ===========
B D                Elephant  ===========
B D        White rhinoceros  ===========
B D                   Horse  ===========
B D                Bushbaby  ===========
B D                  Rhesus  -----------

Alignment block 38 of 580 in window, 47760187 - 47760188, 2 bps 
B D                   Human  ac
B D                   Chimp  ac
B D               Orangutan  ac
B D                  Gibbon  ac
B D                  Baboon  ac
B D            Green monkey  ac
B D                Marmoset  gc
B D                Squirrel  ac
B D                  Medaka  --
    Lesser Egyptian jerboa  ==
B D                    Pika  ==
        Chinese tree shrew  ==
             Big brown bat  ==
             Domestic goat  ==
B D                   Sheep  --
B D                     Cow  ==
B D              Guinea pig  ==
B D                 Gorilla  NN
B D                 Opossum  ==
  D        Peregrine falcon  ==
  D            Saker falcon  ==
  D             Rock pigeon  ==
  D         Green seaturtle  ==
  D          Painted turtle  ==
B D               Tetraodon  --
B D             Stickleback  --
        Southern platyfish  --
       Pundamilia nyererei  --
               Zebra mbuna  --
     Burton's mouthbreeder  --
       Princess of Burundi  --
B D            Nile tilapia  --
B D      American alligator  ==
B D     Crab-eating macaque  --
B D         Squirrel monkey  ==
        Tibetan ground jay  ==
          Tibetan antelope  ==
B D                 Dolphin  ==
          Brush-tailed rat  ==
           Star-nosed mole  ==
              Killer whale  ==
B D          Naked mole-rat  ==
                  Aardvark  ==
B D                 Megabat  ==
B D                     Pig  ==
      David's myotis (bat)  ==
              Weddell seal  ==
B D                   Panda  ==
B D                 Ferret   ==
            Pacific walrus  ==
                Chinchilla  ==
          Black flying-fox  ==
B D                     Dog  ==
B D                     Cat  ==
            Bactrian camel  ==
B D                  Alpaca  ==
B D               Armadillo  ==
B D                 Manatee  ==
B D                Elephant  ==
B D        White rhinoceros  ==
B D                   Horse  ==
B D                Bushbaby  ==
B D                  Rhesus  --

Alignment block 39 of 580 in window, 47760189 - 47760317, 129 bps 
B D                   Human  gcacc----tatagtcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggcggagg
B D                   Chimp  gcacc----tatagtcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggcggagg
B D               Orangutan  gcgcctgtatgtagtcccagctactcgggaggctaaggcaggagaatcacttgaacctgagaggcggagg
B D                  Gibbon  gcgcc----tgtagtgccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggcggagg
B D                  Rhesus  gcacc----tatggccccagctactggggaggctgaggcaggagaatcacttgaacctgggaggtggagg
B D     Crab-eating macaque  gcacc----tatggtcccagctactggggaggctgaggcaggagaatcacttgaacctgggaggtggagg
B D                  Baboon  acacc----tatggtcccagctactggggaggctgaggcaggagaatcacttgaacctgggaggcggagg
B D            Green monkey  gcacc----tatggtcccagctactggggaggctgaggcaggagaatcacttgaacctgggaggcggagg
B D                Marmoset  atgcc----tgtaatcccagctacctgggaggctgaggcaggagaaacacttaaacccaggaggcggagg
B D                Squirrel  ----------------------ac-----------agaagggagagcctccaggccctgctgggggtgga
B D                  Medaka  ----------------------------------------------------------------------
    Lesser Egyptian jerboa  ======================================================================
B D                    Pika  ======================================================================
        Chinese tree shrew  ======================================================================
             Big brown bat  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ----------------------------------------------------------------------
B D                     Cow  ======================================================================
B D              Guinea pig  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
  D             Rock pigeon  ======================================================================
  D         Green seaturtle  ======================================================================
  D          Painted turtle  ======================================================================
B D               Tetraodon  ----------------------------------------------------------------------
B D             Stickleback  ----------------------------------------------------------------------
        Southern platyfish  ----------------------------------------------------------------------
       Pundamilia nyererei  ----------------------------------------------------------------------
               Zebra mbuna  ----------------------------------------------------------------------
     Burton's mouthbreeder  ----------------------------------------------------------------------
       Princess of Burundi  ----------------------------------------------------------------------
B D            Nile tilapia  ----------------------------------------------------------------------
B D      American alligator  ======================================================================
B D         Squirrel monkey  ======================================================================
        Tibetan ground jay  ======================================================================
          Tibetan antelope  ======================================================================
B D                 Dolphin  ======================================================================
          Brush-tailed rat  ======================================================================
           Star-nosed mole  ======================================================================
              Killer whale  ======================================================================
B D          Naked mole-rat  ======================================================================
                  Aardvark  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
      David's myotis (bat)  ======================================================================
              Weddell seal  ======================================================================
B D                   Panda  ======================================================================
B D                 Ferret   ======================================================================
            Pacific walrus  ======================================================================
                Chinchilla  ======================================================================
          Black flying-fox  ======================================================================
B D                     Dog  ======================================================================
B D                     Cat  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
B D               Armadillo  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
B D                Bushbaby  ======================================================================

                      Human  ttgcagtgagctgagaccgcaccactgcactccagcctgggcaacaagagtgaaactccatct
                      Chimp  ttgcagtgagctgagaccgcaccactgcactccagcctgggcaacaagagtgaaactccatct
                  Orangutan  ttgcagtgagctgagattgcaccattgcattctagcctgggcaacaagagtgaaactccgtct
                     Gibbon  ttgcagtgagctgagatcgcgccactgcactccagcctggacaacaagagtgaaactccatct
                     Rhesus  ttgcagtgagctgagatcgcgccactgcactccagactgggcaacaagagtgaaactccatct
        Crab-eating macaque  ttgcagtgagctgagatcgcgccactgcactccagactgggcaacaagagtgaaactccatct
                     Baboon  ttgcagtgagctgagatcgcgccactgcactccagcctgggcaacaagagtgaaactccatct
               Green monkey  ttgcagtgagctgagatcgtgccactgcactccagcctgggcaacaagagtgaaactccatct
                   Marmoset  ttgtaatgagccaagatcataccactgtactccagcctgtgtgacaagagtgaaactctgtct
                   Squirrel  ttgtggc----------------------ctctcacctgga-------agtgca---------
                     Medaka  ---------------------------------------------------------------
     Lesser Egyptian jerboa  ===============================================================
                       Pika  ===============================================================
         Chinese tree shrew  ===============================================================
              Big brown bat  ===============================================================
              Domestic goat  ===============================================================
                      Sheep  ---------------------------------------------------------------
                        Cow  ===============================================================
                 Guinea pig  ===============================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Opossum  ===============================================================
           Peregrine falcon  ===============================================================
               Saker falcon  ===============================================================
                Rock pigeon  ===============================================================
            Green seaturtle  ===============================================================
             Painted turtle  ===============================================================
                  Tetraodon  ---------------------------------------------------------------
                Stickleback  ---------------------------------------------------------------
         Southern platyfish  ---------------------------------------------------------------
        Pundamilia nyererei  ---------------------------------------------------------------
                Zebra mbuna  ---------------------------------------------------------------
      Burton's mouthbreeder  ---------------------------------------------------------------
        Princess of Burundi  ---------------------------------------------------------------
               Nile tilapia  ---------------------------------------------------------------
         American alligator  ===============================================================
            Squirrel monkey  ===============================================================
         Tibetan ground jay  ===============================================================
           Tibetan antelope  ===============================================================
                    Dolphin  ===============================================================
           Brush-tailed rat  ===============================================================
            Star-nosed mole  ===============================================================
               Killer whale  ===============================================================
             Naked mole-rat  ===============================================================
                   Aardvark  ===============================================================
                    Megabat  ===============================================================
                        Pig  ===============================================================
       David's myotis (bat)  ===============================================================
               Weddell seal  ===============================================================
                      Panda  ===============================================================
                    Ferret   ===============================================================
             Pacific walrus  ===============================================================
                 Chinchilla  ===============================================================
           Black flying-fox  ===============================================================
                        Dog  ===============================================================
                        Cat  ===============================================================
             Bactrian camel  ===============================================================
                     Alpaca  ===============================================================
                  Armadillo  ===============================================================
                    Manatee  ===============================================================
                   Elephant  ===============================================================
           White rhinoceros  ===============================================================
                      Horse  ===============================================================
                   Bushbaby  ===============================================================

Alignment block 40 of 580 in window, 47760318 - 47760325, 8 bps 
B D                   Human  caggaaaa
B D                   Chimp  caggaaaa
B D               Orangutan  caggaaaa
B D                  Gibbon  caggaaaa
B D                  Rhesus  cagg-aaa
B D     Crab-eating macaque  cagg--aa
B D                  Baboon  cagg---a
B D            Green monkey  caggaaaa
B D                Marmoset  cagaagaa
B D                Bushbaby  cagtatgg
         Chinese tree shrew  cgggtggg
B D                  Medaka  --------
    Lesser Egyptian jerboa  ========
B D                    Pika  ========
             Big brown bat  ========
             Domestic goat  ========
B D                   Sheep  --------
B D                     Cow  ========
B D              Guinea pig  ========
B D                 Gorilla  NNNNNNNN
B D                 Opossum  ========
  D        Peregrine falcon  ========
  D            Saker falcon  ========
  D             Rock pigeon  ========
  D         Green seaturtle  ========
  D          Painted turtle  ========
B D               Tetraodon  --------
B D             Stickleback  --------
        Southern platyfish  --------
       Pundamilia nyererei  --------
               Zebra mbuna  --------
     Burton's mouthbreeder  --------
       Princess of Burundi  --------
B D            Nile tilapia  --------
B D      American alligator  ========
B D         Squirrel monkey  ========
        Tibetan ground jay  ========
          Tibetan antelope  ========
B D                 Dolphin  ========
          Brush-tailed rat  ========
           Star-nosed mole  ========
              Killer whale  ========
B D          Naked mole-rat  ========
                  Aardvark  ========
B D                 Megabat  ========
B D                     Pig  ========
      David's myotis (bat)  ========
              Weddell seal  ========
B D                   Panda  ========
B D                 Ferret   ========
            Pacific walrus  ========
                Chinchilla  ========
          Black flying-fox  ========
B D                     Dog  ========
B D                     Cat  ========
            Bactrian camel  ========
B D                  Alpaca  ========
B D               Armadillo  ========
B D                 Manatee  ========
B D                Elephant  ========
B D        White rhinoceros  ========
B D                   Horse  ========
B D                Squirrel  --------

Alignment block 41 of 580 in window, 47760326 - 47760328, 3 bps 
B D                   Human  aaa
B D                   Chimp  aaa
B D               Orangutan  aga
B D                  Gibbon  aaa
B D                  Rhesus  aaa
B D     Crab-eating macaque  aaa
B D                  Baboon  aaa
B D            Green monkey  aaa
B D                Marmoset  gaa
B D                Bushbaby  aga
         Chinese tree shrew  agg
           Tibetan antelope  aag
B D                     Cow  aag
              Domestic goat  aaa
B D                  Medaka  ---
    Lesser Egyptian jerboa  ===
B D                    Pika  ===
             Big brown bat  ===
B D                   Sheep  ---
B D              Guinea pig  ===
B D                 Gorilla  NNN
B D                 Opossum  ===
  D        Peregrine falcon  ===
  D            Saker falcon  ===
  D             Rock pigeon  ===
  D         Green seaturtle  ===
  D          Painted turtle  ===
B D               Tetraodon  ---
B D             Stickleback  ---
        Southern platyfish  ---
       Pundamilia nyererei  ---
               Zebra mbuna  ---
     Burton's mouthbreeder  ---
       Princess of Burundi  ---
B D            Nile tilapia  ---
B D      American alligator  ===
B D         Squirrel monkey  ===
        Tibetan ground jay  ===
B D                 Dolphin  ===
          Brush-tailed rat  ===
           Star-nosed mole  ===
              Killer whale  ===
B D          Naked mole-rat  ===
                  Aardvark  ===
B D                 Megabat  ===
B D                     Pig  ===
      David's myotis (bat)  ===
              Weddell seal  ===
B D                   Panda  ===
B D                 Ferret   ===
            Pacific walrus  ===
                Chinchilla  ===
          Black flying-fox  ===
B D                     Dog  ===
B D                     Cat  ===
            Bactrian camel  ===
B D                  Alpaca  ===
B D               Armadillo  ===
B D                 Manatee  ===
B D                Elephant  ===
B D        White rhinoceros  ===
B D                   Horse  ===
B D                Squirrel  ---

Inserts between block 41 and 42 in window
          Tibetan antelope 1bp
B D                    Cow 1bp
             Domestic goat 1bp

Alignment block 42 of 580 in window, 47760329 - 47760332, 4 bps 
B D                   Human  gaaa-
B D                   Chimp  g--a-
B D               Orangutan  g----
B D                  Gibbon  a--a-
B D                  Rhesus  a----
B D     Crab-eating macaque  a----
B D                  Baboon  a----
B D            Green monkey  a----
B D                Marmoset  g----
B D                Bushbaby  ggtg-
         Chinese tree shrew  g----
           Tibetan antelope  -gaa-
B D                     Cow  -gaa-
              Domestic goat  -gaa-
           Black flying-fox  -gaaa
B D                 Megabat  -gaaa
B D                  Medaka  -----
    Lesser Egyptian jerboa  =====
B D                    Pika  =====
             Big brown bat  =====
B D                   Sheep  -----
B D              Guinea pig  =====
B D                 Gorilla  NNNNN
B D                 Opossum  =====
  D        Peregrine falcon  =====
  D            Saker falcon  =====
  D             Rock pigeon  =====
  D         Green seaturtle  =====
  D          Painted turtle  =====
B D               Tetraodon  -----
B D             Stickleback  -----
        Southern platyfish  -----
       Pundamilia nyererei  -----
               Zebra mbuna  -----
     Burton's mouthbreeder  -----
       Princess of Burundi  -----
B D            Nile tilapia  -----
B D      American alligator  =====
B D         Squirrel monkey  =====
        Tibetan ground jay  =====
B D                 Dolphin  =====
          Brush-tailed rat  =====
           Star-nosed mole  =====
              Killer whale  =====
B D          Naked mole-rat  =====
                  Aardvark  =====
B D                     Pig  =====
      David's myotis (bat)  =====
              Weddell seal  =====
B D                   Panda  =====
B D                 Ferret   =====
            Pacific walrus  =====
                Chinchilla  =====
B D                     Dog  =====
B D                     Cat  =====
            Bactrian camel  =====
B D                  Alpaca  =====
B D               Armadillo  =====
B D                 Manatee  =====
B D                Elephant  =====
B D        White rhinoceros  =====
B D                   Horse  =====
B D                Squirrel  -----

Alignment block 43 of 580 in window, 47760333 - 47760340, 8 bps 
B D                   Human  aaaaaaaa-
B D                   Chimp  aaaaaaac-
B D               Orangutan  -----aaa-
B D                  Gibbon  aaaaaaaa-
B D                  Rhesus  --aaaaaa-
B D     Crab-eating macaque  --aaaaaa-
B D                  Baboon  --aaaaaa-
B D            Green monkey  --aaaaaa-
B D                Marmoset  -aaaaaaa-
B D                Bushbaby  agaatgaa-
         Chinese tree shrew  agaatgaa-
           Tibetan antelope  -aatgaaag
B D                     Cow  -aatgaaag
B D                   Sheep  -tgaaaaag
              Domestic goat  -aatgaaag
           Black flying-fox  --ataaaag
B D                 Megabat  --ataaaag
B D                  Medaka  ---------
    Lesser Egyptian jerboa  =========
B D                    Pika  =========
             Big brown bat  =========
B D              Guinea pig  =========
B D                 Gorilla  NNNNNNNNN
B D                 Opossum  =========
  D        Peregrine falcon  =========
  D            Saker falcon  =========
  D             Rock pigeon  =========
  D         Green seaturtle  =========
  D          Painted turtle  =========
B D               Tetraodon  ---------
B D             Stickleback  ---------
        Southern platyfish  ---------
       Pundamilia nyererei  ---------
               Zebra mbuna  ---------
     Burton's mouthbreeder  ---------
       Princess of Burundi  ---------
B D            Nile tilapia  ---------
B D      American alligator  =========
B D         Squirrel monkey  =========
        Tibetan ground jay  =========
B D                 Dolphin  =========
          Brush-tailed rat  =========
           Star-nosed mole  =========
              Killer whale  =========
B D          Naked mole-rat  =========
                  Aardvark  =========
B D                     Pig  =========
      David's myotis (bat)  =========
              Weddell seal  =========
B D                   Panda  =========
B D                 Ferret   =========
            Pacific walrus  =========
                Chinchilla  =========
B D                     Dog  =========
B D                     Cat  =========
            Bactrian camel  =========
B D                  Alpaca  =========
B D               Armadillo  =========
B D                 Manatee  =========
B D                Elephant  =========
B D        White rhinoceros  =========
B D                   Horse  =========
B D                Squirrel  ---------

Inserts between block 43 and 44 in window
          Black flying-fox 1bp
B D                Megabat 1bp

Alignment block 44 of 580 in window, 47760341 - 47760345, 5 bps 
B D                   Human  cacca
B D                   Chimp  cacca
B D               Orangutan  cgcca
B D                  Gibbon  cgcca
B D                  Rhesus  cgccg
B D     Crab-eating macaque  cgccg
B D                  Baboon  cgccg
B D            Green monkey  cgccg
B D                Marmoset  agcca
B D                Bushbaby  agccg
         Chinese tree shrew  agcca
           Tibetan antelope  --cca
B D                     Cow  --cca
B D                   Sheep  --cca
              Domestic goat  --cca
           Black flying-fox  ---ca
B D                 Megabat  ---ca
B D                  Medaka  -----
    Lesser Egyptian jerboa  =====
B D                    Pika  =====
             Big brown bat  =====
B D              Guinea pig  =====
B D                 Gorilla  NNNNN
B D                 Opossum  =====
  D        Peregrine falcon  =====
  D            Saker falcon  =====
  D             Rock pigeon  =====
  D         Green seaturtle  =====
  D          Painted turtle  =====
B D               Tetraodon  -----
B D             Stickleback  -----
        Southern platyfish  -----
       Pundamilia nyererei  -----
               Zebra mbuna  -----
     Burton's mouthbreeder  -----
       Princess of Burundi  -----
B D            Nile tilapia  -----
B D      American alligator  =====
B D         Squirrel monkey  =====
        Tibetan ground jay  =====
B D                 Dolphin  =====
          Brush-tailed rat  =====
           Star-nosed mole  =====
              Killer whale  =====
B D          Naked mole-rat  =====
                  Aardvark  =====
B D                     Pig  =====
      David's myotis (bat)  =====
              Weddell seal  =====
B D                   Panda  =====
B D                 Ferret   =====
            Pacific walrus  =====
                Chinchilla  =====
B D                     Dog  =====
B D                     Cat  =====
            Bactrian camel  =====
B D                  Alpaca  =====
B D               Armadillo  =====
B D                 Manatee  =====
B D                Elephant  =====
B D        White rhinoceros  =====
B D                   Horse  =====
B D                Squirrel  -----

Inserts between block 44 and 45 in window
          Tibetan antelope 2bp
B D                    Cow 2bp
B D                  Sheep 2bp
             Domestic goat 2bp
          Black flying-fox 7bp
B D                Megabat 7bp

Alignment block 45 of 580 in window, 47760346 - 47760358, 13 bps 
B D                   Human  tcta---------tcaaggag---------g
B D                   Chimp  tcta---------tcgaggag---------g
B D               Orangutan  cctg---------ccaaggcg---------g
B D                  Gibbon  tctg---------ccaaggag---------g
B D                  Rhesus  tctg---------ccaaggag---------g
B D     Crab-eating macaque  tctg---------ccaaggag---------g
B D                  Baboon  tctg---------ccaaggag---------g
B D            Green monkey  tctg---------ccaaggag---------g
B D                Marmoset  tctg---------ctaaggag---------g
B D                Bushbaby  cctg---------ccaagtagcaataagcct
         Chinese tree shrew  cctggtgtccagtctgagaag---------g
           Tibetan antelope  tctg---------gtaaagcc---------t
B D                     Cow  tctg---------gtaaagcc---------t
B D                   Sheep  tctg---------gtaaagcc---------t
              Domestic goat  tctg---------gtaaagcc---------t
B D                   Horse  tctg---------ccaaggag---------c
B D                 Ferret   tccg---------tgaaggga---------g
           Black flying-fox  tctg---------ctaaagag---------c
B D                 Megabat  tctg---------ctaaagag---------c
B D                  Medaka  -------------------------------
    Lesser Egyptian jerboa  ===============================
B D                    Pika  ===============================
             Big brown bat  ===============================
B D              Guinea pig  ===============================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ===============================
  D        Peregrine falcon  ===============================
  D            Saker falcon  ===============================
  D             Rock pigeon  ===============================
  D         Green seaturtle  ===============================
  D          Painted turtle  ===============================
B D               Tetraodon  -------------------------------
B D             Stickleback  -------------------------------
        Southern platyfish  -------------------------------
       Pundamilia nyererei  -------------------------------
               Zebra mbuna  -------------------------------
     Burton's mouthbreeder  -------------------------------
       Princess of Burundi  -------------------------------
B D            Nile tilapia  -------------------------------
B D      American alligator  ===============================
B D         Squirrel monkey  ===============================
        Tibetan ground jay  ===============================
B D                 Dolphin  ===============================
          Brush-tailed rat  ===============================
           Star-nosed mole  ===============================
              Killer whale  ===============================
B D          Naked mole-rat  ===============================
                  Aardvark  ===============================
B D                     Pig  ===============================
      David's myotis (bat)  ===============================
              Weddell seal  ===============================
B D                   Panda  ===============================
            Pacific walrus  ===============================
                Chinchilla  ===============================
B D                     Dog  ===============================
B D                     Cat  ===============================
            Bactrian camel  ===============================
B D                  Alpaca  ===============================
B D               Armadillo  ===============================
B D                 Manatee  ===============================
B D                Elephant  ===============================
B D        White rhinoceros  ===============================
B D                Squirrel  -------------------------------

Inserts between block 45 and 46 in window
          Tibetan antelope 6bp
B D                    Cow 6bp
B D                  Sheep 6bp
             Domestic goat 6bp
B D                  Horse 8bp
          Black flying-fox 8bp
B D                Megabat 8bp

Alignment block 46 of 580 in window, 47760359 - 47760359, 1 bps 
B D                   Human  c
B D                   Chimp  c
B D               Orangutan  c
B D                  Gibbon  c
B D                  Rhesus  c
B D     Crab-eating macaque  c
B D                  Baboon  c
B D            Green monkey  c
B D                Marmoset  g
B D                Bushbaby  c
B D                     Pig  c
B D                 Dolphin  c
               Killer whale  c
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  c
B D        White rhinoceros  c
B D                 Ferret   c
           Black flying-fox  t
B D                 Megabat  t
              Big brown bat  c
       David's myotis (bat)  c
B D                  Medaka  -
    Lesser Egyptian jerboa  =
B D                    Pika  =
        Chinese tree shrew  -
B D              Guinea pig  =
B D                 Gorilla  N
B D                 Opossum  =
  D        Peregrine falcon  =
  D            Saker falcon  =
  D             Rock pigeon  =
  D         Green seaturtle  =
  D          Painted turtle  =
B D               Tetraodon  -
B D             Stickleback  -
        Southern platyfish  -
       Pundamilia nyererei  -
               Zebra mbuna  -
     Burton's mouthbreeder  -
       Princess of Burundi  -
B D            Nile tilapia  -
B D      American alligator  =
B D         Squirrel monkey  =
        Tibetan ground jay  =
          Brush-tailed rat  =
           Star-nosed mole  =
B D          Naked mole-rat  =
                  Aardvark  =
              Weddell seal  =
B D                   Panda  =
            Pacific walrus  =
                Chinchilla  =
B D                     Dog  =
B D                     Cat  =
            Bactrian camel  =
B D                  Alpaca  =
B D               Armadillo  =
B D                 Manatee  =
B D                Elephant  =
B D                Squirrel  -

Inserts between block 46 and 47 in window
B D                Ferret  9bp

Alignment block 47 of 580 in window, 47760360 - 47760361, 2 bps 
B D                   Human  ca
B D                   Chimp  ca
B D               Orangutan  ca
B D                  Gibbon  ca
B D                  Rhesus  cg
B D     Crab-eating macaque  cg
B D                  Baboon  cg
B D            Green monkey  cg
B D                Marmoset  tg
B D                Bushbaby  ca
         Chinese tree shrew  -a
B D                     Pig  tg
B D                 Dolphin  ca
               Killer whale  ca
           Tibetan antelope  ca
B D                     Cow  ca
B D                   Sheep  ca
              Domestic goat  ca
B D                   Horse  cg
B D        White rhinoceros  tg
B D                     Cat  ca
B D                     Dog  ca
B D                 Ferret   ta
           Black flying-fox  tg
B D                 Megabat  tg
              Big brown bat  tg
       David's myotis (bat)  tg
            Star-nosed mole  cg
B D                  Medaka  --
    Lesser Egyptian jerboa  ==
B D                    Pika  ==
B D              Guinea pig  ==
B D                 Gorilla  NN
B D                 Opossum  ==
  D        Peregrine falcon  ==
  D            Saker falcon  ==
  D             Rock pigeon  ==
  D         Green seaturtle  ==
  D          Painted turtle  ==
B D               Tetraodon  --
B D             Stickleback  --
        Southern platyfish  --
       Pundamilia nyererei  --
               Zebra mbuna  --
     Burton's mouthbreeder  --
       Princess of Burundi  --
B D            Nile tilapia  --
B D      American alligator  ==
B D         Squirrel monkey  ==
        Tibetan ground jay  ==
          Brush-tailed rat  ==
B D          Naked mole-rat  ==
                  Aardvark  ==
              Weddell seal  ==
B D                   Panda  ==
            Pacific walrus  ==
                Chinchilla  ==
            Bactrian camel  ==
B D                  Alpaca  ==
B D               Armadillo  ==
B D                 Manatee  ==
B D                Elephant  ==
B D                Squirrel  --

Alignment block 48 of 580 in window, 47760362 - 47760364, 3 bps 
B D                   Human  gcc
B D                   Chimp  gcc
B D               Orangutan  gcc
B D                  Gibbon  gcc
B D                  Rhesus  gcc
B D     Crab-eating macaque  gcc
B D                  Baboon  gcc
B D            Green monkey  gcc
B D                Marmoset  gcc
B D                Bushbaby  gcc
         Chinese tree shrew  gcc
B D                     Pig  gcc
B D                 Dolphin  gcc
               Killer whale  gcc
           Tibetan antelope  gcc
B D                     Cow  gcc
B D                   Sheep  gcc
              Domestic goat  gcc
B D                   Horse  gcc
B D        White rhinoceros  gcc
B D                     Cat  gcc
B D                     Dog  gca
B D                 Ferret   gcc
           Black flying-fox  gcc
B D                 Megabat  gtc
              Big brown bat  gcc
       David's myotis (bat)  gcc
            Star-nosed mole  act
                   Aardvark  gcc
B D                  Medaka  ---
    Lesser Egyptian jerboa  ===
B D                    Pika  ===
B D              Guinea pig  ===
B D                 Gorilla  NNN
B D                 Opossum  ===
  D        Peregrine falcon  ===
  D            Saker falcon  ===
  D             Rock pigeon  ===
  D         Green seaturtle  ===
  D          Painted turtle  ===
B D               Tetraodon  ---
B D             Stickleback  ---
        Southern platyfish  ---
       Pundamilia nyererei  ---
               Zebra mbuna  ---
     Burton's mouthbreeder  ---
       Princess of Burundi  ---
B D            Nile tilapia  ---
B D      American alligator  ===
B D         Squirrel monkey  ===
        Tibetan ground jay  ===
          Brush-tailed rat  ===
B D          Naked mole-rat  ===
              Weddell seal  ===
B D                   Panda  ===
            Pacific walrus  ===
                Chinchilla  ===
            Bactrian camel  ===
B D                  Alpaca  ===
B D               Armadillo  ===
B D                 Manatee  ===
B D                Elephant  ===
B D                Squirrel  ---

Inserts between block 48 and 49 in window
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp

Alignment block 49 of 580 in window, 47760365 - 47760368, 4 bps 
B D                   Human  tctg
B D                   Chimp  tctg
B D               Orangutan  tctg
B D                  Gibbon  tctg
B D                  Rhesus  tctg
B D     Crab-eating macaque  tctg
B D                  Baboon  tctg
B D            Green monkey  tctg
B D                Marmoset  tctg
B D                Bushbaby  tctg
         Chinese tree shrew  tctg
B D                     Pig  tgtg
B D                  Alpaca  tctg
             Bactrian camel  tctg
B D                 Dolphin  tttg
               Killer whale  tttg
           Tibetan antelope  tttg
B D                     Cow  tttg
B D                   Sheep  tttg
              Domestic goat  tttg
B D                   Horse  tcgg
B D        White rhinoceros  tctg
B D                     Cat  tctg
B D                     Dog  tctg
B D                 Ferret   tctg
           Black flying-fox  tctg
B D                 Megabat  tctg
              Big brown bat  tctg
       David's myotis (bat)  tgtg
            Star-nosed mole  tatg
                   Aardvark  tctg
B D                  Medaka  ----
    Lesser Egyptian jerboa  ====
B D                    Pika  ====
B D              Guinea pig  ====
B D                 Gorilla  NNNN
B D                 Opossum  ====
  D        Peregrine falcon  ====
  D            Saker falcon  ====
  D             Rock pigeon  ====
  D         Green seaturtle  ====
  D          Painted turtle  ====
B D               Tetraodon  ----
B D             Stickleback  ----
        Southern platyfish  ----
       Pundamilia nyererei  ----
               Zebra mbuna  ----
     Burton's mouthbreeder  ----
       Princess of Burundi  ----
B D            Nile tilapia  ----
B D      American alligator  ====
B D         Squirrel monkey  ====
        Tibetan ground jay  ====
          Brush-tailed rat  ====
B D          Naked mole-rat  ====
              Weddell seal  ====
B D                   Panda  ====
            Pacific walrus  ====
                Chinchilla  ====
B D               Armadillo  ====
B D                 Manatee  ====
B D                Elephant  ====
B D                Squirrel  ----

Inserts between block 49 and 50 in window
                  Aardvark 1bp

Alignment block 50 of 580 in window, 47760369 - 47760412, 44 bps 
B D                   Human  acccagtgactc--tgc-ca--ggg-----------------gtgactgaaggaaactg-----ctgga-
B D                   Chimp  acccagtgactc--tgctca--ggg-----------------gtgactgaaggaaactg-----ctgga-
B D               Orangutan  gcccagtgactc--tgctct--cgg-----------------gtgactgaaggaaactg-----ctgga-
B D                  Gibbon  accccgtaactc--tgctca--ggg-----------------gtgactgaaggaaactg-----ctgga-
B D                  Rhesus  acccagtgactctgtgctca--ggg-----------------gtgaccgaaggaaactg-----ctgga-
B D     Crab-eating macaque  acccagtgactctgtgctca--ggg-----------------gtgaccgaaggaaactg-----ctgga-
B D                  Baboon  acccagtgactctgtgctca--ggg-----------------gtgaccgaaggaaactg-----ctgga-
B D            Green monkey  acccagtgactctgtgctca--ggg-----------------gtgaccgaaggaaactg-----ctgga-
B D                Marmoset  acccagtgacac--tgctct--ggg-----------------gtgactgaaggaa---------ctgga-
B D                Bushbaby  acccacttaatc--catgca--ggg-----------------gagtttggaggaacttg-----ctgga-
         Chinese tree shrew  acccag--------tgct-a--aga-----------------gtg--tgaaggaacctg-----ctaga-
B D                Squirrel  ------------------ca--tgg-----------------------gaatgagcctc-----cggga-
B D                     Pig  acccagttggcc--catcct--ggggtgggactgtggcgggggagtctgaaggaagctg-----ctgga-
B D                  Alpaca  acccagtgagtc--catcct--ggg-------------gagggagtcagaaggaagctg-----ctgga-
             Bactrian camel  acccagtaagtc--catcct--ggg-------------gagggagtcagaaggaagctg-----atgga-
B D                 Dolphin  acccagtaactt--catcct--ggg-------------aagagagtctgaaggaagctg-----ctgga-
               Killer whale  acccagtaactt--catcct--ggg-------------aagagagtctgaaagaagctg-----ctgga-
           Tibetan antelope  acccagtaa-tc--catcct--ggg-------------gagggagtctgaaggaagctaaacttctgga-
B D                     Cow  acccagtaa-tc--catcct--ggg-------------gagggagtctgaaggaagctaaactgctgga-
B D                   Sheep  acccagtaa-tc--catcct--ggg-------------ggggtagtctgaaggaagctaaacttctgga-
              Domestic goat  acccagtaa-tc--catcct--ggg-------------gagggagtctgaaggaagctaaacttctgga-
B D                   Horse  ctccggtaggcc--cactct--ggg-------------gagagagtctgaaggaacctg-----ctggg-
B D        White rhinoceros  aaccagtaactc--cactct--ggg-------------gagtgagtctgaaggaaactg-----cagga-
B D                     Cat  acccagtaagtc--ccttct--ggg-------------gagtaagcgtcaaggaacctt-----ctggaa
B D                     Dog  acccag-aaatc--cattctggggg-------------gagtaagtctgaaggaacctg-----ccaga-
B D                 Ferret   accccg-aaatc--c----------------------------------cagaaaccca-----ttcga-
           Black flying-fox  acccagt------------------------------------ggtctgaaggaaccta-----ccgga-
B D                 Megabat  acccagt------------------------------------ggtctgaaggaacctg-----ccgga-
              Big brown bat  acccagtaaa----catcct--ggg-------------gaatgaatctg-aggaacctg-----ctggg-
       David's myotis (bat)  acccagtaaa----catcct--ggg-------------gaatgaatctg-aggaacctg-----ctggg-
            Star-nosed mole  acccagtgagcc--cag-ct--agg-------------gacagagtcta---gaacctg-----ctggg-
B D                Elephant  acccagca-------gctct--gtg---------------------------------g-----gagaa-
                   Aardvark  ccccagtaaatt--gactct--ggg-------------gagtgagtctgaaagaa-ctg-----gggaa-
B D                  Medaka  ----------------------------------------------------------------------
    Lesser Egyptian jerboa  ======================================================================
B D                    Pika  ======================================================================
B D              Guinea pig  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Opossum  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
  D             Rock pigeon  ======================================================================
  D         Green seaturtle  ======================================================================
  D          Painted turtle  ======================================================================
B D               Tetraodon  ----------------------------------------------------------------------
B D             Stickleback  ----------------------------------------------------------------------
        Southern platyfish  ----------------------------------------------------------------------
       Pundamilia nyererei  ----------------------------------------------------------------------
               Zebra mbuna  ----------------------------------------------------------------------
     Burton's mouthbreeder  ----------------------------------------------------------------------
       Princess of Burundi  ----------------------------------------------------------------------
B D            Nile tilapia  ----------------------------------------------------------------------
B D      American alligator  ======================================================================
B D         Squirrel monkey  ======================================================================
        Tibetan ground jay  ======================================================================
          Brush-tailed rat  ======================================================================
B D          Naked mole-rat  ======================================================================
              Weddell seal  ======================================================================
B