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Manage Custom Tracks
 
Genome: Mouse    Assembly: Dec. 2011 (GRCm38/mm10)    [mm10]
Name Description Type Doc Items Pos
8MO_H3K27me3_trial2_SCICER-W1000-G3000-FDR0.01-island.bed8MO_H3K27me3_trial2_SCICER-W1000-G3000-FDR0.01-island.bedbed 9931chr1:
8MO_H3K27me3_trial2_SCICER8MO_H3K27me3_trial2_SCICERwiggle_0    
8MO_H3K27me3_SCICER_W1000_G3000_FDR_0.001_island.bed8MO_H3K27me3_SCICER_W1000_G3000_FDR_0.001_island.bedbed 9558chr1:
8MO_H3K27me3_SCICER8MO_H3K27me3_SCICERwiggle_0    
8MO_H3K27me3_scicer_W200_g600_FDR_0.01_island.bed8MO_H3K27me3_scicer_W200_g600_FDR_0.01_island.bedbedY24211chr1:
User TrackUser Supplied TrackbedY24211chr1:
8MO_H3K27me3_2.fastq_mm10_ABS_bowtie2_default_rmdup_removed_blackList_Region_bedtools8MO_H3K27me3_2.fastq_mm10_ABS_bowtie2_default_rmdup_removed_blackList_Region_bedtoolswiggle_0Y   
TH_3C_8MO_compartment_B.bedTH_3C_8MO_compartment_B.bedbedY1352chr1:
TH_3C_8MO_compartment_A.bedTH_3C_8MO_compartment_A.bedbedY1191chr1:
TH_3C_2MO_compartment_B.bedTH_3C_2MO_compartment_B.bedbedY1352chr1:
TH_3C_2MO_compartment_A.bedTH_3C_2MO_compartment_A.bedbedY1192chr1:
8MO_H3K9me3_filtered_bam_mm10_MACS_120120_using_bampe_peak8MO_H3K9me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
8MO_H3K9me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw8MO_H3K9me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
8MO_H3K4me3_filtered_bam_mm10_MACS_120120_using_bampe_peak8MO_H3K4me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
8MO_H3K4me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw8MO_H3K4me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
8MO_H3K27me3_filtered_bam_mm10_MACS_120120_using_bampe_peak8MO_H3K27me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
8MO_H3K27me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw8MO_H3K27me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
8MO_H3K27ac_filtered_bam_mm10_MACS_120120_using_bampe_peak8MO_H3K27ac_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
8MO_H3K27ac_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw8MO_H3K27ac_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
2MO_H3K9me3_filtered_bam_mm10_MACS_120120_using_bampe_peak2MO_H3K9me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
2MO_H3K9me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw2MO_H3K9me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
2MO_H3K9me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtracte2MO_H3K9me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtractebigWigY     
2MO_H3K4me3_filtered_bam_mm10_MACS_120120_using_bampe_peak2MO_H3K4me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
2MO_H3K4me3_aligned_filtered_bam_mm10_MACS_201120_using_bampe_peak.broadPeak2MO_H3K4me3_aligned_filtered_bam_mm10_MACS_201120_using_bampe_peak.broadPeakencodePeakY   
2MO_H3K4me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw2MO_H3K4me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
2MO_H3K4me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtracte2MO_H3K4me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtractebigWigY     
2MO_H3K27me3_filtered_bam_mm10_MACS_120120_using_bampe_peak2MO_H3K27me3_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
2MO_H3K27me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw2MO_H3K27me3_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
2MO_H3K27me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtract2MO_H3K27me3_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtractbigWigY     
2MO_H3K27ac_filtered_bam_mm10_MACS_120120_using_bampe_peak2MO_H3K27ac_filtered_bam_mm10_MACS_120120_using_bampe_peakencodePeakY   
2MO_H3K27ac_ABS_ChIPseq_Input_subtracted_deeptool12012020.bw2MO_H3K27ac_ABS_ChIPseq_Input_subtracted_deeptool12012020.bwbigWigY     
2MO_H3K27ac_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtracte2MO_H3K27ac_2.fastq_mm10_ABS_bowtie2_default_rmdup.removed.blackList.Region.bedtools_Input_subtractebigWigY     
8MO_rep1_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bw8MO_rep1_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
8MO_rep1_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bw8MO_rep1_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
8MO_rep1_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw8MO_rep1_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
8MO_rep1_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw8MO_rep1_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
8MO_rep1_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw8MO_rep1_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_TH_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_TH_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_LT_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_LT_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_8N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_8N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_4N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_4N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_2N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_2N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
8MO_Rep2_16N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bw8MO_Rep2_16N_STAR_aligned_mm10_M19_ERCC_050320Aligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep2_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep2_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep2_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep2_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep2_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep2_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep2_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep2_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep2_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep2_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep1_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep1_TH_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep1_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep1_LT_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep1_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep1_8N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep1_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep1_4N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_rep1_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bw2MO_rep1_2N_M19_STAR_outputAligned.sortedByCoord.out.bam.bwbigWigY     
2MO_Rep3_TH_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bw2MO_Rep3_TH_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bwbigWigY     
2MO_Rep3_8N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bw2MO_Rep3_8N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bwbigWigY     
2MO_Rep3_4N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bw2MO_Rep3_4N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bwbigWigY     
2MO_Rep3_2N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bw2MO_Rep3_2N_STAR_aligned_mm10_M19_ERCC_050220Aligned.sortedByCoord.out.bam.bwbigWigY     
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Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

Please note a much more efficient way to load data is to use Track Hubs, which are loaded from the Track Hubs Portal found in the menu under My Data.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.